LOCUS       NM_001270456            2299 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus PRAME like 47 (Pramel47), mRNA.
ACCESSION   NM_001270456 XM_001476589
VERSION     NM_001270456.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2299)
  AUTHORS   Pham,A.H., Emori,C., Ishikawa-Yamauchi,Y., Tokuhiro,K.,
            Kamoshita,M., Fujihara,Y. and Ikawa,M.
  TITLE     Thirteen Ovary-Enriched Genes Are Individually Not Essential for
            Female Fertility in Mice
  JOURNAL   Cells 13 (10), 802 (2024)
   PUBMED   38786026
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2299)
  AUTHORS   Evsikov,A.V., Graber,J.H., Brockman,J.M., Hampl,A., Holbrook,A.E.,
            Singh,P., Eppig,J.J., Solter,D. and Knowles,B.B.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CA558875.1, DV658954.1, DV656723.1, AC125382.2 and DV657544.1.
            
            On Jul 10, 2012 this sequence version replaced XM_001476589.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: DV658954.1 [ECO:0000331]
            RNAseq introns       :: partial sample support SAMN00849374
                                    [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-629               CA558875.1         1-629
            630-1208            DV658954.1         156-734
            1209-1308           DV656723.1         6-105
            1309-1521           AC125382.2         172671-172883
            1522-2299           DV657544.1         1-778
FEATURES             Location/Qualifiers
     source          1..2299
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 47.29 cM"
     gene            1..2299
                     /gene="Pramel47"
                     /gene_synonym="100041296; Gm3259"
                     /note="PRAME like 47"
                     /db_xref="GeneID:100041296"
                     /db_xref="MGI:MGI:3781437"
     exon            1..106
                     /gene="Pramel47"
                     /gene_synonym="100041296; Gm3259"
                     /inference="alignment:Splign:2.1.0"
     exon            107..209
                     /gene="Pramel47"
                     /gene_synonym="100041296; Gm3259"
                     /inference="alignment:Splign:2.1.0"
     exon            210..503
                     /gene="Pramel47"
                     /gene_synonym="100041296; Gm3259"
                     /inference="alignment:Splign:2.1.0"
     CDS             235..1662
                     /gene="Pramel47"
                     /gene_synonym="100041296; Gm3259"
                     /codon_start=1
                     /product="PRAME like 47"
                     /protein_id="NP_001257385.1"
                     /db_xref="CCDS:CCDS57363.1"
                     /db_xref="GeneID:100041296"
                     /db_xref="MGI:MGI:3781437"
                     /translation="MSGQTPPTHTLLTHEALIMSSLEELPTVVFPALFKEAFAGRQTN
                     LLKAMVAAWPFPCLHVGSLMKKPNLETLQALLDGIDMRLTREFHPRRAKLQVLDMRNM
                     YHAFWNIRADANDSDYKSKTLDEKQLVKVLPRYARRQRLKVIVNLSISSHFNKSKAYF
                     LNWAKQRIGSLYFCCIKMKIWDPPDQVIRDIFNVFDPEHITELELNTDWTLLQLAHFA
                     PYFGHMKNLQKVFLAPLHKNTSPIINITSATEAKCVHKIISQFSQFNCLQHIFMKHVH
                     FLRDYMNQVLGCLMTPLETLSITQCLISQRDFDLFSCSQNLFKLKHLEIRGMILYALD
                     LMPLRGLLQKVADTLEILDFQWCRMKDSQINALLPALSQCTQLNQINFYNNDFSMCTL
                     KALFQHTANWSKMNVEQYPAPLQCYNELGHVSVERFVQLCQELMYTLRAIRQPKSISF
                     ATDNCQKCGKPCVYDQGPIFCSCFQ"
     exon            504..1094
                     /gene="Pramel47"
                     /gene_synonym="100041296; Gm3259"
                     /inference="alignment:Splign:2.1.0"
     exon            1095..2299
                     /gene="Pramel47"
                     /gene_synonym="100041296; Gm3259"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaagaaggt ggctttttgc ttcagaggag taagggaaac tttcagagtt gtagaaccta
       61 aaacttcagc ctgtccttgc ttgaactagg aacactgtca ccacagattc tccaagatct
      121 gcctaatgtt ttgcattggg tctctgcatc tgtctccatc agctgctgtg tgaagcctct
      181 catatgacat gaatgctagg ctcccgtcgg agcctttact gaagacctga gaggatgagt
      241 ggtcagaccc cacccacaca cactctgctg acacatgaag ctttgatcat gtcctctctg
      301 gaggagttgc ctactgtggt cttcccagca ctattcaaag aggcctttgc tggcagacaa
      361 accaatctcc taaaggcaat ggtggcagcc tggcctttcc cctgtctcca tgtggggtca
      421 ttgatgaaga agcctaacct agaaaccttg caagctctgc tagatggaat agacatgcga
      481 ctgacaagag agtttcaccc caggagggca aaacttcagg ttcttgacat gagaaatatg
      541 taccatgcct tctggaacat acgggctgat gcaaatgaca gtgactataa atcaaagaca
      601 ttggatgaaa agcagctagt gaaggtcctt ccgagatatg cacggaggca gcgtctgaag
      661 gtcatagtca acctgtcaat cagttcccac ttcaataaat caaaggcata tttcttgaat
      721 tgggccaagc agagaatagg atccctatat ttctgctgta taaagatgaa gatctgggac
      781 ccaccagacc aagttatcag agacatcttt aatgtttttg atccagagca catcacagaa
      841 ttagaactga atactgactg gactctgtta caacttgcac attttgctcc ctattttggg
      901 cacatgaaaa atcttcaaaa agtcttcctg gcacccctcc acaagaatac ctcccctatt
      961 atcaatataa caagtgccac agaagccaag tgtgttcaca aaattatttc tcagttttcc
     1021 caattcaact gtctccagca tatcttcatg aaacacgtcc attttctaag agactacatg
     1081 aatcaggtcc tagggtgcct gatgacaccc ttggagaccc tctccatcac tcaatgccta
     1141 atttcacaga gagactttga tttattttcc tgctcccaaa acctctttaa attaaaacat
     1201 ctggaaataa gagggatgat cttatatgct ttggatctta tgcctctgag aggtctccta
     1261 caaaaagtag cagacactct tgagattctg gattttcagt ggtgtaggat gaaggactcc
     1321 cagatcaatg ccctcctacc tgccctcagt caatgcactc agctcaacca gatcaacttc
     1381 tacaacaatg acttctccat gtgcaccctg aaggcccttt tccagcacac agccaactgg
     1441 agcaagatga atgtggaaca ataccctgcc cctctgcagt gctataatga gttgggtcat
     1501 gtctctgtag aaagatttgt ccaactttgt caggagctca tgtatactct cagagctata
     1561 aggcagccca agagcatctc ttttgctaca gataactgtc aaaaatgtgg taagccctgt
     1621 gtctatgacc agggcccaat attttgttct tgttttcagt aaacatagat acaggacttc
     1681 tggatatgaa taaatgacag gcttgggaca catcttttat ctgcagtgct cagaaactgt
     1741 gatttcagac acttcccata tggttggaaa taaagagatt tacagtgact gggaccctga
     1801 aggttgagct taacattggg accatttcga tggaatctga tatcaggggg gttgtggggt
     1861 cagaaaaaga gtttggcatt tatatgtggc ttctgcccag acagtgtata tatagatgct
     1921 tttttgtgta ctcataaacc tagatgatct ctctcatggg tctttgacta ttaacaacat
     1981 cactatcagg gtcagggtct agaaggttga ataggtccag gattggaaat acactgttat
     2041 tttataaaga aaggtaagtt ttaggtgata aatggcatgt ataaaatgaa agtattcgtg
     2101 acacatcttt cccttgtctc ttgcctgggc tacatgtgta acacttttgt gtggctgatc
     2161 agttatgtgc acaaaacatt taaactaaag tgagcaacat agacaaattc tttgaaggag
     2221 gaagaaaagt gtcacaaatg gttactatac agtacattca gaccacaaag caccttggac
     2281 ccatcaaaga tgcctaaag
//
