LOCUS       NM_001243938            2039 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus PRAME like 42 (Pramel42), transcript variant 2, mRNA.
ACCESSION   NM_001243938
VERSION     NM_001243938.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2039)
  AUTHORS   Evsikov AV, Graber JH, Brockman JM, Hampl A, Holbrook AE, Singh P,
            Eppig JJ, Solter D and Knowles BB.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
REFERENCE   2  (bases 1 to 2039)
  AUTHORS   Sharov AA, Piao Y, Matoba R, Dudekula DB, Qian Y, VanBuren V, Falco
            G, Martin PR, Stagg CA, Bassey UC, Wang Y, Carter MG, Hamatani T,
            Aiba K, Akutsu H, Sharova L, Tanaka TS, Kimber WL, Yoshikawa T,
            Jaradat SA, Pantano S, Nagaraja R, Boheler KR, Taub D, Hodes RJ,
            Longo DL, Schlessinger D, Keller J, Klotz E, Kelsoe G, Umezawa A,
            Vescovi AL, Rossant J, Kunath T, Hogan BL, Curci A, D'Urso M, Kelso
            J, Hide W and Ko MS.
  TITLE     Transcriptome analysis of mouse stem cells and early embryos
  JOURNAL   PLoS Biol 1 (3), E74 (2003)
   PUBMED   14691545
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CN715963.1, AC164085.3, CN721389.1 and DV644701.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Both variants 1 and 2 encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-49                CN715963.1         1-49
            50-50               AC164085.3         52934-52934         c
            51-619              CN715963.1         51-619
            620-1215            CN721389.1         67-662
            1216-1694           AC164085.3         41230-41708         c
            1695-2039           DV644701.1         1-345
FEATURES             Location/Qualifiers
     source          1..2039
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 47.29 cM"
     gene            1..2039
                     /gene="Pramel42"
                     /gene_synonym="100041102; Gm3139"
                     /note="PRAME like 42"
                     /db_xref="GeneID:100041102"
                     /db_xref="MGI:MGI:3781318"
     exon            1..112
                     /gene="Pramel42"
                     /gene_synonym="100041102; Gm3139"
                     /inference="alignment:Splign:2.1.0"
     exon            113..426
                     /gene="Pramel42"
                     /gene_synonym="100041102; Gm3139"
                     /inference="alignment:Splign:2.1.0"
     CDS             140..1585
                     /gene="Pramel42"
                     /gene_synonym="100041102; Gm3139"
                     /codon_start=1
                     /product="uncharacterized protein LOC100041102"
                     /protein_id="NP_001230867.1"
                     /db_xref="CCDS:CCDS57361.1"
                     /db_xref="GeneID:100041102"
                     /db_xref="MGI:MGI:3781318"
                     /translation="MSGQTPPTLQKRARQTQLRDEALAISPLENVPAVYVPWLFQEAF
                     AGRHNSLIKTMVAAWPFQYLPVGSLINMHNLETLQALLDGVDRRLTRKFPPGRPKLQV
                     LDMRNVHHVFWNIGSDANDSDSDAETLDEKQVVKALPRYALRQRLKIIVDLSISSQLN
                     EEKAYFLNWAKQRKGSINFCCTKMKIWDAPDKVIREIMNVFHPEHITELELYTDWTLL
                     RLAHFAPYFGQMKNLEKVFLAPLHKNTSPIMNITGASKVKCIKKIISQFSKFNCLQHV
                     FMKRVHFLRDHLHQILGCLRTPLQTLSITHCLISQTDLDSFSCCHNLFKLKNLEIRGV
                     TLFALDLMPLRGLLGKLAGTLKSLDFQWCSMKDSQLIVLLPALSQCSQLNQINFYSND
                     FSMAILKDLLQHTATWSKMNVEQYPVPLECYDALGNVSRERFVELCQELMDTLRAKRE
                     PKSISFATNVCQNCGKTCVYGQGARLCSCLQ"
     exon            427..1017
                     /gene="Pramel42"
                     /gene_synonym="100041102; Gm3139"
                     /inference="alignment:Splign:2.1.0"
     exon            1018..2024
                     /gene="Pramel42"
                     /gene_synonym="100041102; Gm3139"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaagaagaaa gactctctct tctctgtgtg tgtgggactc agcaactgct agatccttgg
       61 acttccattc acatctgctg ctgaccattg ttggggagtt ggactacaga ctgagccttc
      121 ttcctgaaga cctgagagga tgagtggtca gaccccaccc acactccaga agcgagcaag
      181 gcagacacag ctgagagatg aggctttggc catatcccct ctggagaacg tgccagctgt
      241 gtacgtccca tggctgttcc aagaggcctt tgctggcaga cacaactcgc tcataaagac
      301 aatggtggca gcctggcctt tccaatatct ccctgtgggg tcattgataa atatgcataa
      361 cctggaaacc ttgcaagctc tgctagatgg tgtagacagg agactgacaa gaaaatttcc
      421 ccccgggagg ccaaaacttc aggttctcga catgagaaat gtgcaccatg tcttctggaa
      481 catagggagc gatgcaaatg acagtgactc tgatgcagag accttggatg aaaagcaagt
      541 agtgaaggcc cttcccagat atgcactgag gcagcgtctg aagatcatag ttgatctgtc
      601 aatcagttct cagctcaatg aagaaaaagc atatttcttg aattgggcca agcagagaaa
      661 ggggtccata aatttctgct gtacaaagat gaagatctgg gatgcaccag acaaagttat
      721 cagagaaatc atgaatgttt ttcatccaga gcacattaca gaattagaac tgtataccga
      781 ctggactctg ttgcggctgg cacattttgc tccctacttt gggcagatga aaaatcttga
      841 aaaagtcttc ctggcaccac tccacaagaa tacctcccct attatgaata taacaggggc
      901 ctcaaaagtc aagtgtatca aaaagattat ttctcagttt tccaaattca actgtctcca
      961 acatgtcttc atgaaacgtg tccattttct cagagaccac ctgcatcaga tcctagggtg
     1021 cctgaggacg cccttgcaga ccctctccat cactcactgc ctaatttcac agacagactt
     1081 ggattccttt tcctgctgtc acaacctttt taagttaaaa aatctggaaa tcagaggagt
     1141 gacactattt gctctcgatc ttatgcctct gagaggtctc ctaggaaaac tggcaggtac
     1201 tcttaagtct ctggattttc agtggtgtag catgaaggac tcccagctca ttgtcctctt
     1261 acctgccctc agtcaatgct ctcagctcaa ccagatcaac ttctacagca atgacttctc
     1321 catggccatc ctgaaggacc ttttgcagca cacagccacc tggagcaaga tgaatgtgga
     1381 acaataccct gtccctctgg agtgctatga tgcattgggt aatgtctcca gagaaagatt
     1441 tgtggaactt tgtcaggagc tcatggatac cctcagggcc aaaagagagc ctaagagcat
     1501 atcttttgca acaaatgtct gccaaaactg tggcaagacc tgtgtctatg gccagggggc
     1561 aaggctttgt tcctgtttgc agtaaacatg gatacaggac ttctgactat gaataaatga
     1621 catgctttgg acacatctct catccaaggt gctcagagac tgtgacttca gacacttccc
     1681 atatggttag aagtaaagag atgggtagtg actgggaccc tgaatgctta gattgaaatg
     1741 tggactattc caatagactg ttggaccagg ggcatgatgg agtcagaaaa acagtttggc
     1801 atttatatgt ggcttctgcc cagacagtat atatagatgc tttttgtgta cctatcaacc
     1861 tggatgatgt ctccccgggg tcttggactt tttccaacct tactaccagg ttcagtgtca
     1921 ggatgataga ataggtccag gtttggaaag acactgttgt tttatgaagg aagcaaagtt
     1981 ccaggtgaat atggcatgta taaaataaaa gttttcttga cacaaaaaaa aaaaaaaaa
//
