LOCUS       NM_177918               3864 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus PRAME like 3E (Pramel3e), mRNA.
ACCESSION   NM_177918 XM_284742
VERSION     NM_177918.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3864)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3864)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   3  (bases 1 to 3864)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL954640.6.
            
            On May 17, 2022 this sequence version replaced NM_177918.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK029939.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-137               AL954640.6         74603-74739
            138-256             AL954640.6         74938-75056
            257-556             AL954640.6         79288-79587
            557-1141            AL954640.6         80891-81475
            1142-3864           AL954640.6         82053-84775
FEATURES             Location/Qualifiers
     source          1..3864
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 57.12 cM"
     gene            1..3864
                     /gene="Pramel3e"
                     /gene_synonym="4932408M16; AV320801"
                     /note="PRAME like 3E"
                     /db_xref="GeneID:331531"
                     /db_xref="MGI:MGI:3035227"
     exon            1..137
                     /gene="Pramel3e"
                     /gene_synonym="4932408M16; AV320801"
                     /inference="alignment:Splign:2.1.0"
     exon            138..256
                     /gene="Pramel3e"
                     /gene_synonym="4932408M16; AV320801"
                     /inference="alignment:Splign:2.1.0"
     exon            257..556
                     /gene="Pramel3e"
                     /gene_synonym="4932408M16; AV320801"
                     /inference="alignment:Splign:2.1.0"
     CDS             267..1655
                     /gene="Pramel3e"
                     /gene_synonym="4932408M16; AV320801"
                     /codon_start=1
                     /product="pramel3 family member"
                     /protein_id="NP_808586.2"
                     /db_xref="CCDS:CCDS53189.1"
                     /db_xref="GeneID:331531"
                     /db_xref="MGI:MGI:3035227"
                     /translation="MDTKDPPTLLDLATQNLLSNEHAAIQALEEIPRELFVPLFTAAF
                     TGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLLALNSATRSPKLR
                     ILDLRQDAGCKTVCPEISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPM
                     ELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKC
                     VDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKEL
                     SLSSFCLTDHLENVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNP
                     IYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQI
                     TMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEA
                     ERSDMNWITYSD"
     exon            557..1141
                     /gene="Pramel3e"
                     /gene_synonym="4932408M16; AV320801"
                     /inference="alignment:Splign:2.1.0"
     exon            1142..3864
                     /gene="Pramel3e"
                     /gene_synonym="4932408M16; AV320801"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctttaaatt agagccgtgg ccattacagg agccgtcgcc attatgacta tggtgccccc
       61 gctacaggga aagcctcgcg gataccgagg ggctgccaaa gtggaggaca tggaagtcag
      121 agggcttaac tgcttgggtt ctccatataa cctttaacct cctcttcaaa aatttatatt
      181 cctgagaagg acttggtgac atttcaaaga ctgtggcacg aggttttgaa gttctacgtc
      241 aacctacatt aatgtggttc attatgatgg acaccaagga cccgcccaca ctattggatc
      301 ttgctacaca gaatctattg agtaatgagc atgcagcaat ccaagccctg gaggagatcc
      361 caagggagct ttttgtccct ttgttcactg ctgccttcac gggtagacac aagaatatac
      421 tgacagcaat tgtgaaggct tggccttttg cctgtctcca cattggggca ttaagtgtgc
      481 aggaacctga gcgtgaactc ctgaaagcct tgattgagag tcttcagttc ctccttgccc
      541 tgaactcagc tactaggagc cctaaactga ggatcctaga tttaaggcag gatgctggct
      601 gcaagaccgt atgtcctgag atcagtacta attcgacaat ttgctttcgt tcttgtgctc
      661 actctgagca ctctatcttc aaaattgaag gccaggagag tctttcaagt tccaagtctg
      721 aagctcagcc ctctaggctg cctatggaat tgatagtgga catttccctt gatggcactt
      781 tgagggaaag gaattttttt gctttgcttc agaataaagt agagcagagc ctaggctctc
      841 tgcacctgtg ctgcagagat ttgcaaatta ataacttgtg tgaatgcaga catgcattaa
      901 gccatctgga tctgaaatgt gttgatcacc ttgcagttga tgagtctcct cttactgaag
      961 ttaccaaact tttatctcat acaatacagc tggacagtct tagcctgtct aaaatcgctt
     1021 gtagatcttt gaatgggaga acctttagaa attttatcac ccaactgagt cgtatgaacc
     1081 acctgaagga gctcagcttg tcttcattct gcctcacaga tcatcttgaa aatgtcctga
     1141 gagtactatc tgctgatttg gagttcttat atctgccgtt ctgtggactt tcttacagtg
     1201 acttcaagtt tctctctgag tgctctcaag tcagtcattt aaagttgctg aatgtcaaca
     1261 acaatccaat atattgggaa gattgtgagc cattttatta tctcctgcag aatgtttcta
     1321 gcaccttgca gcatctgaaa atttgttatt gctttttaac agattctaca atctctgttc
     1381 ttatcccagc cctaacccgg tgttctcaac ttcgagtgct tcacttttat tcaaatcaaa
     1441 ttaccatggg catgcttatg agaattcttg agctattaac tccattgaag gagcttaaac
     1501 atgtgatcta tcccatccct gtccattgct atgggaggtg gcattttcaa ggcagtttag
     1561 atagacagaa ggttgaagat gtgcagagac aattgaactt aatgctacag gaggcagaaa
     1621 ggagtgatat gaattggatc acttactctg attaaattac aaagtccaac acagtttcaa
     1681 cttgatatgt tcccattaag ggcttttttc ttaatgccat agacagaata tataaggttc
     1741 ttatgttgta ggagaataca attaagaagt ataggttgta actgatttct atagagaata
     1801 atttacaaga agatagagga cgttgagatt acctatgtgt ctctcagcta ttgttgtgga
     1861 tagcatttca tctcaccaaa taaattgtaa gtagaggata tggaaagttt ttgttatgaa
     1921 atactaacaa caccctgtcc tcactgagat ttgcctgtgg atacttagtg cagttgtgac
     1981 aatataactt ttcctgcatg tgaatttgga ggcaggtggc aattgaagac aacacttttt
     2041 attgcatacg ttgtattaag tttctatatt tcagccttct tcagttgttt aaaggaaacc
     2101 atctggattt aacagtgaga aaaattattt gtaactacta ccattaagtg gttcaatttt
     2161 tatttcatat tcattgatta aggattagtt tgaaatatta ttactgaacc actgactgtg
     2221 gtttatcggt tgttaaagca actagaaagg tgttgtacac acttagaccc ccaagcttca
     2281 tcttcccagc tcttagtaca tattctcttc catgcaaaac ggactttatg atgttggatc
     2341 tcctcagcag gattcaggga ttcaacatcg ccatcttgga ggcatgctct cacatctgtt
     2401 tgatatctac catctggcct cctgcaaaat gcctggtata gtagactggt agggaagaga
     2461 actttgtttc tttgttttgg acgtttcact aaggttgttt gactccactc tttgggacct
     2521 tggcaagaca gaatatgatt aggagttttg acagagggag ttcctttcaa ctcatgaggc
     2581 cagggagcag acagagaagc ctgagtcccc acacagccat caggaatgca atttcattga
     2641 tttgcatcct tgaactaccc tgacataaag tttctaccac ctaccctgga gcctctcttg
     2701 aactatcctg ctcaaagatt tcaactgcct gcattggaac catcagcttg agaccaatat
     2761 gaacttggaa agacaggagt ccagccacaa caacgactat tattcctttt gaaatttttt
     2821 ttcttttacc actagttcct tcatggtata cttgactcag tttgaaattc tgattttttt
     2881 gtatggaact ttccacattt gccataatat tgtgtagcaa atgcattatg catggagctg
     2941 tttagagttg aaacttcaaa tacgattacc ataaatagaa aagcatgtag tttgctcacg
     3001 acatagtgtg aacaaagcat atatacctat caattaggat gctatttttg ctaatgtatt
     3061 gaaaagttaa tacactacat tgcaaaaaca tagaaaagtg tatacattta gtttgttcct
     3121 gtcacatcct gatatgtcta catcactgca ttttaatgac atataagttt aatgaaaaaa
     3181 atcctttatg gagtcttttt ataaataaac ctaactgcat ttaaaaatct aataagaaaa
     3241 ccagaagcaa cagtgtgtct atattgcttt aagtttgaaa ttatactgga tttcagatca
     3301 actaaataaa actggggtta aaagctacag aattttgtta acagttctca catgtcaaga
     3361 tgatactgaa ctatactgta gagatacaga gcactaaaat ttatctggaa aattaacatt
     3421 tgtgttgatt acatttattt gttaatagat tttcaaattc aagtagcaac ttaaacaaaa
     3481 gtcatgtgca aaattctggt gtatgatttg ttaacaaagc atttgaaaga ctcaaaagca
     3541 agaatggaga attaatgaca ttcatctttt tcatattgct ttatattaaa atgcagaatt
     3601 taatattcca atgtcaatgt aaccagcaaa tgttttataa tgctttcttg ttaacatcac
     3661 attatcttgt catctttgag taagtaaaat gttactataa tttaagtcca tgagattcat
     3721 ttaatatttt tgtttaggtt ttcttctttc caatgtgatt ctatacattt tctgggcata
     3781 acatatatta ttctcaattc cttgctttca tctgatttga aaataatcta tcctcaggaa
     3841 tgattaaaac atttttcaaa tgtt
//
