LOCUS       NM_001099321            3708 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus PRAME like 3D (Pramel3d), mRNA.
ACCESSION   NM_001099321 XM_001474398
VERSION     NM_001099321.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3708)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3708)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL954643.8.
            
            On May 12, 2022 this sequence version replaced NM_001099321.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC119585.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-140               AL954643.8         61706-61845         c
            141-259             AL954643.8         61389-61507         c
            260-559             AL954643.8         56856-57155         c
            560-1144            AL954643.8         54968-55552         c
            1145-3708           AL954643.8         51827-54390         c
FEATURES             Location/Qualifiers
     source          1..3708
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 56.64 cM"
     gene            1..3708
                     /gene="Pramel3d"
                     /gene_synonym="Gm15023"
                     /note="PRAME like 3D"
                     /db_xref="GeneID:100040635"
                     /db_xref="MGI:MGI:3805552"
     exon            1..140
                     /gene="Pramel3d"
                     /gene_synonym="Gm15023"
                     /inference="alignment:Splign:2.1.0"
     exon            141..259
                     /gene="Pramel3d"
                     /gene_synonym="Gm15023"
                     /inference="alignment:Splign:2.1.0"
     exon            260..559
                     /gene="Pramel3d"
                     /gene_synonym="Gm15023"
                     /inference="alignment:Splign:2.1.0"
     CDS             270..1658
                     /gene="Pramel3d"
                     /gene_synonym="Gm15023"
                     /codon_start=1
                     /product="pramel3 family member"
                     /protein_id="NP_001092791.2"
                     /db_xref="CCDS:CCDS53186.1"
                     /db_xref="GeneID:100040635"
                     /db_xref="MGI:MGI:3805552"
                     /translation="MDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAF
                     TGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLPALNSATRSPKLR
                     ILDLRQDAGCKTVCPEISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPM
                     ELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKC
                     VDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKEL
                     SLSSFCLTDHLENVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNP
                     IYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQI
                     TMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEA
                     ERSDMNWITYSD"
     exon            560..1144
                     /gene="Pramel3d"
                     /gene_synonym="Gm15023"
                     /inference="alignment:Splign:2.1.0"
     exon            1145..3708
                     /gene="Pramel3d"
                     /gene_synonym="Gm15023"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctgctttaa attagagccg tggccattac aggagccgtc gccattatga ctatggtgcc
       61 cccgctacag ggaaagcctc gcggataccg aggggctgcc aaagtggagg acatggaagt
      121 cagagggctt aactgcttgg gttctccata taacctttaa cctcctcttc aaaaatttat
      181 attcctgaga aggacttggt gacatttcaa agactgtggc acgaggtttt gaagttctac
      241 gtcaacctac attaatgtgg ttcattatga tggacaccaa ggacccgccc acactattgg
      301 atcttgctac acagagtcta ttgagtaatg agcatgcagc aatccaagcc ctggaggaga
      361 tcccaaggga gctttttgtc cctttgttca ctgctgcctt cacgggtaga cacaagaata
      421 tactgacagc aattgtgaag gcttggcctt ttgcctgtct ccacattggg gcattaagtg
      481 tgcaggaacc tgagcgtgaa ctcctgaaag ccttgattga gagtcttcag ttcctccctg
      541 ccctgaactc agctactagg agccctaaac tgaggatcct agatttaagg caggatgctg
      601 gctgcaagac cgtatgtcct gagatcagta ctaattcgac aatttgcttt cgttcttgtg
      661 ctcactctga gcactctatc ttcaaaattg aaggccagga gagtctttca agttccaagt
      721 ctgaagctca gccctctagg ctgcctatgg aattgatagt ggacatttcc cttgatggca
      781 ctttgaggga aaggaatttt tttgctttgc ttcagaataa agtagagcag agcctaggct
      841 ctctgcacct gtgctgcaga gatttgcaaa ttaataactt gtgtgaatgc agacatgcat
      901 taagccatct ggatctgaaa tgtgttgatc accttgcagt tgatgagtct cctcttactg
      961 aagttaccaa acttttatct catacaatac agctggacag tcttagcctg tctaaaatcg
     1021 cttgtagatc tttgaatggg agaaccttta gaaattttat cacccaactg agtcgtatga
     1081 accacctgaa ggagctcagc ttgtcttcat tctgcctcac agatcatctt gaaaatgtcc
     1141 tgagagtact atctgctgat ttggagttct tatatctgcc gttctgtgga ctttcttaca
     1201 gtgacttcaa gtttctctct gagtgctctc aagtcagtca tttaaagttg ctgaatgtca
     1261 acaacaatcc aatatattgg gaagattgtg agccatttta ttatctcctg cagaatgttt
     1321 ctagcacctt gcagcatctg aaaatttgtt attgcttttt aacagattct acaatctctg
     1381 ttcttatccc agccctaacc cggtgttctc aacttcgagt gcttcacttt tattcaaatc
     1441 aaattaccat gggcatgctt atgagaattc ttgagctatt aactccattg aaggagctta
     1501 aacatgtgat ctatcccatc cctgtccatt gctatgggag gtggcatttt caaggcagtt
     1561 tagatagaca gaaggttgaa gatgtgcaga gacaattgaa cttaatgcta caggaggcag
     1621 aaaggagtga tatgaattgg atcacttact ctgattaaat tacaaagtcc aacacagttt
     1681 caacttgata tgttcccatt aagggctttt ttcttaatgc catagacaga atatataagg
     1741 ttcttatgtt gtaggagaat acaattaaga agtataggtt gtaactgatt tctatagaga
     1801 ataatttaca agaagataga ggacgttgag attacctatg tgtctctcag ctattgttgt
     1861 ggatagcatt tcatctcacc aaataaattg taagtagagg atatggaaag tttttgttat
     1921 gaaatactaa caacaccctg tcctcactga gatttgcctg tggatactta gtgcagttgt
     1981 gacaatataa cttttcctgc atgtgaattt ggaggcaggt ggcaattgaa gacaacactt
     2041 tttattgcat acgttgtatt aagtttctat atttcagcct tcttcagttg tttaaaggaa
     2101 accatctgga tttaacagtg agaaaaatta tttgtaacta ctaccattaa gtggttcaat
     2161 ttttatttca tattcattga ttaaggatta gtttgaaata ttattactga accactgact
     2221 gtggtttatc ggttgttaaa gcaactagaa aggtgttgta cacacttaga cccccaagct
     2281 tcatcttccc agctcttagt acatattctc ttccatgcaa aacggacttt atgatgttgg
     2341 atctcctcag caggattcag ggattcaaca tcgccatctt ggaggcatgc tctcacatct
     2401 gtttgatatc taccatctgg cctcctgcaa aatgcctggt atagtagact ggtagggaag
     2461 agaactttgt ttctttgttt tggacgtttc actaaggttg tttgactcca ctctttggga
     2521 ccttggcaag acagaatatg attaggagtt ttgacagagg gagttccttt caactcatga
     2581 ggccagggag cagacagaga agcctgagtc cccacacagc catcaggagt gcaatttcat
     2641 tgatttgcat ccttgaacta ccctgacata aagtttctac cacctaccct ggagcctctc
     2701 ttgaactatc ctgctcaaag atttcaactg cctgcattgg aaccatcagc ttgagaccaa
     2761 tatgaacttg gaaagacagg agtccagcca caacaacgac tattattcct tttgaaattt
     2821 tttttctttt accactagtt ccttcatggt atacttgact cagtttgaaa ttctgatttt
     2881 tttgtatgga actttccaca tttgccataa tattgtgtag caaatgcatt atgcatggag
     2941 ctgtttagag ttgaaacttc aaatacgatt accataaata gaaaagcatg tagtttgctc
     3001 acgacatagt gtgaacaaag catatatacc tatcaattag gatgctattt ttgctaatgt
     3061 attgaaaagt taatacacta cattgcaaaa acatagaaaa gtgtatacat ttagtttgtt
     3121 cctgtcacat cctgatatgt ctacatcact gcattttaat gacatataag tttaatgaaa
     3181 aaaatccttt atggagtctt tttataaata aacctaactg catttaaaaa tctaataaga
     3241 aaaccagaag caacagtgtg tctatattgc tttaagtttg aaattatact ggatttcaga
     3301 tcaactaaat aaaactgggg ttaaaagcta cagaattttg ttaacagttc tcacatgtca
     3361 agatgatact gaactatact gtagagatac agagcactaa aatttatctg gaaaattaac
     3421 atttgtgttg attacattta tttgttaata gattttcaaa ttcaagtagc aacttaaaca
     3481 aaagtcatgt gcaaaattct ggtgtatgat ttgttaacaa agcatttgaa agactcaaaa
     3541 gcaagaatgg agaattaatg acattcatct ttttcatatt gctttatatt aaaatgcaga
     3601 atttaatatt ccaatgtcaa tgtaaccagc aaatgtttta taatgctttc ttgttaacat
     3661 cacattatct tgtcatcttt gagtaagtaa aatgttacta taatttaa
//
