LOCUS       NM_183320               3840 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus PRAME like 3C (Pramel3c), mRNA.
ACCESSION   NM_183320
VERSION     NM_183320.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3840)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3840)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   3  (bases 1 to 3840)
  AUTHORS   Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
            Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
            K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
            Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
            Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
            Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
            Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
            Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
            Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
            Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
            Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
            Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
            Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
            N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
            Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
            Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
            Hayashizaki Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX571775.7.
            
            On May 11, 2022 this sequence version replaced NM_183320.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK029697.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on computational evidence
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-127               BX571775.7         9722-9848
            128-246             BX571775.7         10047-10165
            247-546             BX571775.7         14365-14664
            547-1131            BX571775.7         15966-16550
            1132-3840           BX571775.7         17127-19835
FEATURES             Location/Qualifiers
     source          1..3840
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 56.94 cM"
     gene            1..3840
                     /gene="Pramel3c"
                     /gene_synonym="4930481M05; EG331529; Gm5128"
                     /note="PRAME like 3C"
                     /db_xref="GeneID:331529"
                     /db_xref="MGI:MGI:3647038"
     exon            1..127
                     /gene="Pramel3c"
                     /gene_synonym="4930481M05; EG331529; Gm5128"
                     /inference="alignment:Splign:2.1.0"
     exon            128..246
                     /gene="Pramel3c"
                     /gene_synonym="4930481M05; EG331529; Gm5128"
                     /inference="alignment:Splign:2.1.0"
     exon            247..546
                     /gene="Pramel3c"
                     /gene_synonym="4930481M05; EG331529; Gm5128"
                     /inference="alignment:Splign:2.1.0"
     CDS             257..1645
                     /gene="Pramel3c"
                     /gene_synonym="4930481M05; EG331529; Gm5128"
                     /codon_start=1
                     /product="pramel3 family member"
                     /protein_id="NP_899143.3"
                     /db_xref="CCDS:CCDS53187.1"
                     /db_xref="GeneID:331529"
                     /db_xref="MGI:MGI:3647038"
                     /translation="MDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAF
                     TGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLPALNSATRSPKLR
                     ILDLRQDAGCKTVCPDISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPM
                     ELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKC
                     VDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKEL
                     SLSSFCLTDHLETVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNP
                     IYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQI
                     TMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEA
                     ERSDMNWITYSD"
     exon            547..1131
                     /gene="Pramel3c"
                     /gene_synonym="4930481M05; EG331529; Gm5128"
                     /inference="alignment:Splign:2.1.0"
     exon            1132..3840
                     /gene="Pramel3c"
                     /gene_synonym="4930481M05; EG331529; Gm5128"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagccgtgg ccattacagg agccgtcgcc attatgacta tggtgccccc gctacaggga
       61 aagcctcgcg gataccgagg ggctgccaaa gtggaggaca tggaagtcag agggcttaac
      121 tgcttgggtt ctccatataa cctttaacct cctcttcaaa aatttatatt cctgagaagg
      181 acttggtgac atttcaaaga ctgtggcacg aggttttgaa gttctacgtc aacctacatt
      241 aacgtggttc attatgatgg acaccaagga cccgcccaca ctattggatc ttgctacaca
      301 gagtctattg agtaatgagc atgcagcaat ccaagccctg gaggagatcc caagggagct
      361 ttttgtccct ctattcactg ctgccttcac gggtagacac aagaatatac tgacagcaat
      421 tgtgaaggct tggccttttg cctgtctcca cattggggca ttaagtgtgc aggaacccga
      481 gcgtgaactc ctgaaagcct tgattgagag tcttcagttc ctccctgccc tgaactcagc
      541 tactaggagc cctaaactga ggatcctaga tttaaggcag gatgctggct gcaagaccgt
      601 atgtcctgat atcagtacta attcgacaat ttgctttcgt tcttgtgctc actctgagca
      661 ctctatcttc aaaattgaag gccaggagag tctttcaagt tccaagtctg aagctcagcc
      721 ctctaggctg cctatggaat tgatagtgga catttccctt gatggcactt tgagggaaag
      781 gaattttttt gctttgcttc agaataaagt agagcagagc ctaggctctc tgcacctgtg
      841 ctgcagagat ttgcaaatta ataacttgtg tgaatgcaga catgcattaa gccatctgga
      901 tctgaaatgt gttgatcacc ttgcagttga tgagtctcct cttactgaag tcaccaaact
      961 tttatctcat acaatacagc tggacagtct tagcctgtct aaaatcgctt gtagatcttt
     1021 gaatgggaga acctttagaa attttatcac ccaactgagt cgtatgaacc acctgaagga
     1081 gctcagcttg tcttcattct gcctcacaga tcatcttgaa actgtcctga gagtactatc
     1141 tgctgatttg gagttcttat atctaccgtt ctgtggactt tcttacagtg acttcaagtt
     1201 tctctctgag tgctctcaag tcagtcattt aaagttgctg aatgtcaaca acaatccaat
     1261 atattgggaa gattgtgagc cattttatta tctcctgcag aatgtttcta gcaccttgca
     1321 gcatctgaaa atttgttatt gctttttaac agattctaca atctctgttc ttatcccagc
     1381 cctaacccgg tgttctcaac ttcgagtgct tcacttttat tcaaatcaaa ttaccatggg
     1441 tatgcttatg agaattcttg agctattaac accattgaag gagcttaaac atgtgattta
     1501 tcccatccct gtccattgct atgggaggtg gcattttcaa ggcagtttag atagacagaa
     1561 ggttgaagat gtgcagagac aattgaactt aatgctacag gaggcagaaa ggagtgatat
     1621 gaattggatc acttactctg attaaattac aaagtccaac acagtttcaa cttgatatgt
     1681 tcccattaag ggcttttttt cttaatacca tagacagaat atataaggtt cttgtgttgt
     1741 aggagaatac aattaagaag tataggttgt aactgatttc tatagagaat aatttacaag
     1801 aagatagagg acgttgagag tacctatgtg tctctcagct attgtcgtgg atagcatttc
     1861 atctcaccaa ataaatttta agtagaggat atggaaagtt tttgttatga aatactaaca
     1921 acaccctgtc ctcactgaga tttgcctgtg gatacttagt gccagttgtg acaatataac
     1981 ttttcctgca tgtgaatttg gaggcaggtg gcaattgaag ccaacacttt ttattgcata
     2041 agttgtatta agtttctata tttcagctgt cttcagttgt ttaaaggaaa ccaactggat
     2101 ttaacagtga gaaaaagtat ttgtaactac taccattaag tggttcaatt tttatttcat
     2161 attcattgat taaggattag tttgagatat aattactgaa ccactgactg tggtttatcg
     2221 gttgttaaag caactagaaa ggtgttgtac acacttagac cccaagcttc atcttcccag
     2281 ctcttagtac atattctctt caatgcaaaa cagactttat gatgttggat ctcctcagca
     2341 ggattcaggg attcaacatt gccatcttgg aggcatgctc tcacatctgt ttgatatcta
     2401 ccatctggcc tcctgcaaaa tgcctggtat agcagactgg tagggaagag aactttgttt
     2461 ctttgtttta gacgtttcac taaggttgtt tgactccact cctttggaac tttggcgaga
     2521 cagaatatga ttaggagttt tgacagaggg agttcctttc aactcatgag gccagggagc
     2581 agacagagaa gcctgagtcc ccacacagcc atcaggagtg caatttcatt gatttgcatc
     2641 cttgaactac cctgacataa aatttctacc acctaccctg gagcctttct tgaactagcc
     2701 tgctcaaaga tttcaactgc ctgcattgga accatcagct tgagaccaat atgaacttgg
     2761 aaagacagga gtccagccac aacaaccact attattcctt ttgaaatttt tttcttttac
     2821 cactagttcc ttcatggtat acttgactca gtttgaaatt ctgatttttt tgtatggaac
     2881 tttccacatt tgccataata ttgtgtagca aatgcattat gcatggagct gtttagagtt
     2941 gaaacttcaa atacgattac cataaataga aaagcatgta gtttgctcaa gacatagtgt
     3001 gaacaaagca tatataccta tcaattagga tgctattttt gttaatgtat tgaaaagtta
     3061 atacactaaa ttgcaaaaac atagaaaagt gtatacattt agtttgttcc tgtatatgtc
     3121 tacatcactg cattttaatg acatataagt ttaatgaaaa aatcctttat ggggtctttt
     3181 tataaataaa gctaactgca tttaaaaatc taataagaaa accagaagca acagtgtgtc
     3241 tatattgctt taagtttgaa attatactgg atttcagatc aactaaataa aactggggtt
     3301 aaaagctaca gaattttgtt aacagttctc acatgtcaag atgatactga actatactgt
     3361 agagatacag agcactaaaa tttatctgga aaattaacat ttgtgttgat tacatttatt
     3421 tgttaataga ttttcaaatt caagtagcaa cttaaacaaa agccatgtgc aaaattctgg
     3481 tgtatgattt gttaataaag catttgaaag actcaaaagc aagaatggag aattaatgac
     3541 attcatcttt ttcatattgc ttatatatta aaatgcagaa tttaatattc caatgtcaat
     3601 gtaaccagca aatgttttat aatgctttct tgttaacatc acattatttt gtcatctttg
     3661 agtaagtaaa atgttactaa aatttaagtc catgagattc atttaatatt tttgtttagg
     3721 ttttcttctt tccaatgtga ttctatacat tttctgggca taacatatat tctcaattcc
     3781 ttgctttcat ctgatttgaa aataatctat cctcaggaat gattaaaaca tttttcaaaa
//
