LOCUS       NM_001007077            1838 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus PRAME like 25 (Pramel25), transcript variant 1, mRNA.
ACCESSION   NM_001007077 XM_110518
VERSION     NM_001007077.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Tang F, Barbacioru C, Nordman E, Bao S, Lee C, Wang X, Tuch BB,
            Heard E, Lao K and Surani MA.
  TITLE     Deterministic and stochastic allele specific gene expression in
            single mouse blastomeres
  JOURNAL   PLoS One 6 (6), e21208 (2011)
   PUBMED   21731673
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Piao Y, Ko NT, Lim MK and Ko MS.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CF174133.1, CA559385.1, BC084594.1, AK135972.1 and BB285244.1.
            
            On Apr 25, 2009 this sequence version replaced NM_001007077.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK135972.1, BC084594.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-180               CF174133.1         9-188
            181-611             CA559385.1         151-581
            612-1365            BC084594.1         593-1346
            1366-1828           AK135972.1         1349-1811
            1829-1838           BB285244.1         262-271
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 77.96 cM"
     gene            1..1838
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /note="PRAME like 25"
                     /db_xref="GeneID:194227"
                     /db_xref="MGI:MGI:3650478"
     exon            1..98
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..1565
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="oogenesin-like isoform 1"
                     /protein_id="NP_001007078.2"
                     /db_xref="CCDS:CCDS18894.1"
                     /db_xref="GeneID:194227"
                     /db_xref="MGI:MGI:3650478"
                     /translation="MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAIS
                     ALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEG
                     LDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKK
                     ELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVH
                     ADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSL
                     ISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCL
                     NICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQ
                     CSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESF
                     CPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA"
     exon            99..409
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /inference="alignment:Splign:2.1.0"
     exon            410..985
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /inference="alignment:Splign:2.1.0"
     exon            986..1838
                     /gene="Pramel25"
                     /gene_synonym="Gm13023; MGC:91194"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atagcaggga gaggaagtat agattaggtc tcttggagcc tggagtcaca gctttccctt
       61 gcctgaatat ggtgatctgt ggccattgtc cagatcagga tgagtcttta gaagaagtca
      121 cagaggaatg ctattcccca cccaccctcc agaatctggc aattcagagt ctactgaggg
      181 atgaggcctt ggccatttct gctctcacgg acctgcccca gagtctgttc ccagtaattt
      241 ttgaggaggc cttcactgat ggacatatag ggatcttgaa ggccatgata cctgaatggc
      301 ccttcccata cctttcttta ggaaagcaga taaataattg caacctggag actttgaagg
      361 ctatccttga gggactagat atactgcttg cacaaaaggt tcaaaccagt aggtgcaaac
      421 tcagagtaat taattggaga gatcatgact tgaacttatg ggctggatcc catgaaggtg
      481 aaggcttatc agaattcact acagagaagc agccaattga gaacagtcct ggctgtgagg
      541 tgaagaaaga attgaaggtg atgactgaag tccttcgcat gaagggcaga cttgatgaat
      601 ctaccacata cttgttgcag tgggcccagc agagaacaga ttctattaat ttattctgca
      661 gaaagctagt aattgaaggc ttaaccaaag cctcagtgat agaaatcttc aaaactgtac
      721 acgcagactg tatacaggag cttatcctaa gacgtatctg catagaagag ttggcttttc
      781 ttaatcccta cctgaaactg atgaaaagac ttttcacact cacactagat cacatcatag
      841 gtaccttcag ttttggtgat tctgaaaagc ttgatgagga gataatattc agcttgattt
      901 ctcaacttcc cacactccac tgtctccaga aactctatgt aaatgatgtc ccttttataa
      961 aaggcaacct gaaagaatac ctcaggtgcc tgaaaaagcc cttggagaca ctttgcatca
     1021 gtaactgtga cctctcacag tcagacttgg attacctgcc ctattgcctg aatatttgtg
     1081 aactcaaaca tctgcatctt agtgatatat gtctacgtga tttactcctt gagcctcttg
     1141 ggtttctcct tgagagagtt ggagataccc tgaaaatcct ggaattggag tcatgttgta
     1201 tagtggactt tcagttcagt gccttgctgc ctgccctaag ccaatgttct cacctcagag
     1261 aggtcacttt ctatgataat aatttctctc tgcctttctt gaaacaactt ctacaccaca
     1321 cagccctgct gagtcagctg atcagtgagt gttaccctgc ccctctggag tgctatgatg
     1381 acagtggtgt aatactaaca cacagattag aaagtttttg tcctgagctc ctggatatac
     1441 tcaaagccaa aagacagctc caaagtgtct cctttgaaac aacccaatgc tctaaatgtg
     1501 gtgggtgcta catttatgac caggagaccc aatgttgtca ttttgtggaa ctactattag
     1561 cttgattgcg aaaccgagaa atggaaactt agtattgggg actgatgaaa tcctaagtaa
     1621 acgtccactg ctaaatggag catgaaaatg tcaatcacct aaaagtctga gatacatagg
     1681 aaagtcaata ccttcctcag agctggtgaa tggatgttgc atctgcagaa agtatcaagc
     1741 acttgtagtt tgtgtgtgtt acaatagagg caccatttta tgaaactggc ccaatctgtt
     1801 ttctgtgtac aataaatgtg ttgactttct gagttgca
//
