LOCUS       NM_001007579            2103 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus PRAME like 20 (Pramel20), mRNA.
ACCESSION   NM_001007579 XM_285848
VERSION     NM_001007579.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2103)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2103)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL611930.25.
            
            On Jun 21, 2007 this sequence version replaced NM_001007579.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC080695.1, SRR17253013.1205566.1
                                           [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-46                AL611930.25        185252-185297
            47-360              AL611930.25        188770-189083
            361-951             AL611930.25        189561-190151
            952-2103            AL611930.25        190432-191583
FEATURES             Location/Qualifiers
     source          1..2103
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 77.78 cM"
     gene            1..2103
                     /gene="Pramel20"
                     /note="PRAME like 20"
                     /db_xref="GeneID:329986"
                     /db_xref="MGI:MGI:3525148"
     exon            1..46
                     /gene="Pramel20"
                     /inference="alignment:Splign:2.1.0"
     exon            47..360
                     /gene="Pramel20"
                     /inference="alignment:Splign:2.1.0"
     CDS             74..1519
                     /gene="Pramel20"
                     /codon_start=1
                     /product="pramel family member"
                     /protein_id="NP_001007580.1"
                     /db_xref="CCDS:CCDS51354.1"
                     /db_xref="GeneID:329986"
                     /db_xref="MGI:MGI:3525148"
                     /translation="MSFQAPPTLLSLAVQSLAKNEALAINALQELPRELYPPLFKAAF
                     IDRHTRILKEMVGAWPLPCLPVGALMNVPDMTVLQAVLDGVDMQLTGKFHPRKRKLQV
                     LDLRNVHHHFWDVSAGPEDGDGSAETVCQKQKATRPHRYALRRRLKVVTDLCLQFYLE
                     EHQTYFLQWAQERRGSLNLCCVKMQIRELPMHTVRKILQIFQPYCIEELELHIGWTQS
                     TLACFAPCLGQMKNLRKLHLTLVHEKLFTFLCTSTDIQEKSVTKFISQFSKLNSLRHL
                     DLAGLYFLTGHMNELLGCLKTPLEFLSIALCKYSQSDMESFAQCQSLHHLKHLHLAGV
                     ILHDLSLVPLGIFLENVANTLKTLELEHCRMTDSQVSAFIPALNKCSQLIEVNFCDND
                     ISMPVLTNLLHHTANLSQLIMELYPAPLECYETGFVLRPERIVQLSSELMNILCTVRQ
                     PHSICFASQLCLICSQRCTYGLETRLCHCCQ"
     exon            361..951
                     /gene="Pramel20"
                     /inference="alignment:Splign:2.1.0"
     exon            952..2103
                     /gene="Pramel20"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtttcttcc tgaccctgct gagaatagat gcggatttct gatcaggtct attcattgta
       61 aagattcatc aggatgagct tccaggctcc acccacactc ctgagcttgg cagtacagag
      121 cctggcgaag aatgaagcct tggccatcaa tgctctgcag gagctgccca gggagttgta
      181 tccaccactc ttcaaggcag ccttcattga cagacacacg aggatactga aggaaatggt
      241 gggagcctgg cctttacctt gcctccctgt gggggcactg atgaacgtcc ctgacatgac
      301 tgtattgcaa gctgtgctgg atggtgtaga catgcagctg acaggaaaat ttcacccaag
      361 aaagaggaag cttcaagtgc tggacctgag aaatgtgcac catcacttct gggatgtttc
      421 agctggacca gaggatggag acggctcagc agagacagtg tgtcaaaagc agaaagcaac
      481 acgccctcat agatatgcac tgaggagacg tttaaaggtg gtcactgacc tttgccttca
      541 gttttatcta gaggaacatc aaacttactt cttgcagtgg gcacaggaga gaagaggttc
      601 cctgaacctg tgctgtgtga agatgcagat tagggaattg cctatgcaca ctgtaaggaa
      661 gatcttgcag attttccaac catattgcat tgaggagttg gaattgcata taggctggac
      721 tcagtccaca ctggcatgct ttgcaccttg ccttggtcag atgaagaatc ttcgtaaact
      781 ccatctaaca ctagtccacg agaaactctt cacttttcta tgtacgtcaa cagacataca
      841 ggagaagagt gtcaccaagt tcatttctca gttctccaaa ctcaacagtc tccggcatct
      901 cgacctggct ggcctctact ttctcactgg ccacatgaat gaattgctcg ggtgtctgaa
      961 gactccgctg gagttcctgt caattgctct ctgcaagtac tcacagtcag acatggagtc
     1021 ctttgcccag tgtcagagtc tccatcatct caaacatctg catttggcag gtgtcatttt
     1081 gcatgatctg agtcttgtgc ctctcggaat tttcctagaa aatgttgcaa acactctgaa
     1141 gaccttggaa ttagaacatt gtaggatgac agactctcag gtcagcgctt ttatccctgc
     1201 cctgaataag tgctctcagc tcatcgaggt caacttctgt gacaatgaca tctccatgcc
     1261 tgtcctaacg aaccttctgc atcacacagc caacctaagc cagctgatca tggagcttta
     1321 tcctgctcct ctggagtgct atgaaaccgg ttttgttctt agaccagaga gaattgtcca
     1381 gctttcttct gagctcatga acatactttg cactgttagg cagccccact ctatctgttt
     1441 tgcctctcag ttatgcctta tatgttcaca gcgctgtaca tatggtctgg agaccagact
     1501 ttgccattgt tgccagtaaa taggaggagg attcgtttgg taactgagaa atgaaagtct
     1561 aaggacaagt ctacgatcaa ggtgttcctg aacacatgtc ttctgacatt gatcaatgta
     1621 ttagagacag agtggctgac tgtgacatct ttagagtgga cgtgtgagga gaaatgacta
     1681 atggaatcat acagttgtgc atttcaaaat gtggatttgt ccaggaatag atcggaacgg
     1741 tgtgttctct ctctgaagga tattcttcct ctctttcttt ctacctaaca atgtcatatt
     1801 agcccacgct ggacttgaac tcatgctttt ttcttctcca tgattgctga agtccctgat
     1861 aaatgccacc atgctcagct tggaggcaac ctcactgtag gactctattc attagggctc
     1921 ccaagctctg ttggccacct acatataaag atctctagga gatagacaag tgtctgtcct
     1981 cccctgaagg tttgcattat aaatgtccag tggggatctc tattttgttc atgattcctg
     2041 aacctagcca ttgtgtttct ttgtgtctga ataatcatgt agcaataaat aataataata
     2101 cca
//
