LOCUS       NM_001033790            1975 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus PRAME like 17 (Pramel17), mRNA.
ACCESSION   NM_001033790 XM_143997 XM_915313
VERSION     NM_001033790.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1975)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1975)
  AUTHORS   De Iaco,A., Verp,S., Offner,S., Grun,D. and Trono,D.
  TITLE     DUX is a non-essential synchronizer of zygotic genome activation
  JOURNAL   Development 147 (2) (2020)
   PUBMED   31806660
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1975)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. PMID: 29144450]
REFERENCE   4  (bases 1 to 1975)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            AL732609.6.
            
            On May 2, 2007 this sequence version replaced NM_001033790.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK139557.1, BC147377.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-115               AL732609.6         26694-26808         c
            116-429             AL732609.6         20612-20925         c
            430-1002            AL732609.6         19611-20183         c
            1003-1975           AL732609.6         17755-18727         c
FEATURES             Location/Qualifiers
     source          1..1975
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 46.99 cM"
     gene            1..1975
                     /gene="Pramel17"
                     /gene_synonym="B020004J07Rik"
                     /note="PRAME like 17"
                     /db_xref="GeneID:545662"
                     /db_xref="MGI:MGI:3588238"
     exon            1..115
                     /gene="Pramel17"
                     /gene_synonym="B020004J07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            116..429
                     /gene="Pramel17"
                     /gene_synonym="B020004J07Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             143..1573
                     /gene="Pramel17"
                     /gene_synonym="B020004J07Rik"
                     /codon_start=1
                     /product="uncharacterized protein LOC545662"
                     /protein_id="NP_001028962.1"
                     /db_xref="CCDS:CCDS51241.1"
                     /db_xref="GeneID:545662"
                     /db_xref="MGI:MGI:3588238"
                     /translation="MSTYNPPTLLQLALDGVLRKDSIDFSDLEYLPITLFPPLFIKAF
                     NSRHTEIVKKMVATWPFPCLPVGALLKTAGVEMLQAVLDGIDILLTQNVSLRCKLQVL
                     DLRFLHQDFWTGKQNAICPADILIKKQVPEGLPNYPLRQCLQVVTNLALVSSLNEHQI
                     CLLQWAQQKKDSLQLCCLKMTIYNLPPEVISEVLDTFQPTYIVDLEIHTREVMSFLGF
                     FAHFLGQMRNLVKFYLNQIDFYFSVANTVTDGKIGAAKFFSQFSQLNHLQHVYMNGAY
                     ISYDNMKKLFRCLKSPLETLFFTFCHLSMSDLRHMSDCQRLYQLKHLYLKGVVFSKSY
                     FKSLRVLLENVSATLQTLGLEHCRMKDSHLKVLLPALIQCSQLIFVNFFDNHFSSPVL
                     KDLLRCMANLSKLTGERYPVPVECYNDIGKVMVERFFQLCPELMDLLTAKRQPKKIFF
                     ATVCCPNCLRRCVYDLNTTRLCHCWE"
     exon            430..1002
                     /gene="Pramel17"
                     /gene_synonym="B020004J07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1003..1975
                     /gene="Pramel17"
                     /gene_synonym="B020004J07Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agctcttgct cttgctcctt cgcctgcttg ctgcgtgaga ctgagtaact gctagatcct
       61 tggacttcca ttcacagctg cgactgaatc attgttggga attgggctgc cgactgttcc
      121 ttctgactga atatctatca ggatgagcac ctacaaccct cccacactcc tgcagctcgc
      181 actggacggg gtgctgagga aggattccat agacttctct gatctggagt acctgcccat
      241 cacgctcttc ccaccactct tcataaaggc cttcaatagc agacacacag agatagtaaa
      301 gaaaatggtg gcaacctggc cctttccctg cctccctgtg ggggcactgc ttaaaaccgc
      361 tggtgtggaa atgctgcaag ctgtgctgga tggcatagat atactgctga cacagaatgt
      421 tagtctcagg tgcaagcttc aagtgttgga cttgagattt ttgcaccagg atttctggac
      481 tggaaaacag aatgccatct gcccagcaga tattttgatc aagaagcaag tcccagaggg
      541 ccttcctaac tatccactaa ggcagtgttt gcaggtagtc actaacctgg ccctagtatc
      601 ttctctaaac gaacaccaaa tatgcttgct gcagtgggcc caacaaaaaa aagactcttt
      661 gcagctatgc tgtctgaaga tgacgattta taacctccca ccagaggtta tcagcgaggt
      721 cttggacact ttccagccga cctatattgt ggatttggaa atacacacac gagaggtcat
      781 gtccttccta ggtttctttg cccatttcct tggccagatg agaaatcttg tcaaattcta
      841 tctaaatcaa atcgacttct actttagtgt tgcgaacaca gtgacagatg gaaagatagg
      901 tgctgccaaa ttcttttctc agttctccca actcaaccat ctccagcatg tctatatgaa
      961 tggtgcctac atttcctatg acaacatgaa aaagttgttc agatgcctga agagtccctt
     1021 ggagaccttg ttttttactt tctgccatct ctcaatgtcc gacttgagac acatgtcaga
     1081 ctgtcagagg ctctatcaat tgaaacacct atacttaaag ggtgtagtgt tttccaagtc
     1141 atatttcaag agtctccgag ttctcctaga gaatgtatct gcaactctac agaccctggg
     1201 gttagagcac tgcaggatga aggactctca cctcaaagtc ctcttgcctg ccttgatcca
     1261 gtgctcccag ctcatctttg tcaatttctt tgacaaccac ttctccagtc ctgtactgaa
     1321 ggaccttctg cgatgcatgg ctaacctaag caagttgact ggagagcggt accccgtccc
     1381 tgtagagtgc tataatgaca taggtaaagt tatggtggag agatttttcc aactgtgtcc
     1441 tgagctcatg gatctactca cggctaaaag gcagcccaag aaaatcttct ttgctactgt
     1501 ctgctgccct aattgtttga gacgctgtgt ctatgacttg aacaccacca gactttgcca
     1561 ttgttgggag taaagaggag tttgattctg gatgctggga aatgaaatct aagaaagtac
     1621 attcatcaca gagtcccaga attcaaggct ttggatgcat tggaatcaaa atgttcagtg
     1681 tccagagacc tcaggagtga cttgacatga agaataatag gataaacgtg tcttgtggaa
     1741 tcagaaagac agtacagcat ttctaaatgt gcctccatca ggacaggatc accagtggct
     1801 tccccatgtt gtaaacatat gaccaatcta tgaactgaat agtctttttt gtgctactga
     1861 gtcactgaca tcagttttag gtttatgatc ctgctgtcct atgacctcaa gatgtatgat
     1921 caaggaaatt atctaagcta tgttggaagc aaaacacatt aaagtcaatt atgac
//
