LOCUS       NM_138602               1206 bp    mRNA    linear   ROD 01-MAY-2024
DEFINITION  Mus musculus PRA1 domain family 2 (Praf2), mRNA.
ACCESSION   NM_138602
VERSION     NM_138602.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1206)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1206)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1206)
  AUTHORS   Cifuentes-Diaz,C., Marullo,S. and Doly,S.
  TITLE     Anatomical and ultrastructural study of PRAF2 expression in the
            mouse central nervous system
  JOURNAL   Brain Struct Funct 221 (8), 4169-4185 (2016)
   PUBMED   26645984
  REMARK    GeneRIF: Consistent with its function of GB1 gatekeeper Prenylated
            Rab acceptor family, member 2 was present in brain areas expressing
            the GABAB, including the cortex, the hippocampus, the VTA and raphe
            nuclei.
REFERENCE   4  (bases 1 to 1206)
  AUTHORS   Hasegawa,Y., Fukuda,S., Shimokawa,K., Kondo,S., Maeda,N. and
            Hayashizaki,Y.
  TITLE     A RecA-mediated exon profiling method
  JOURNAL   Nucleic Acids Res 34 (13), e97 (2006)
   PUBMED   16896013
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1206)
  AUTHORS   Lin,Q., Donahue,S.L., Moore-Jarrett,T., Cao,S., Osipovich,A.B. and
            Ruley,H.E.
  TITLE     Mutagenesis of diploid mammalian genes by gene entrapment
  JOURNAL   Nucleic Acids Res 34 (20), e139 (2006)
   PUBMED   17062627
REFERENCE   6  (bases 1 to 1206)
  AUTHORS   Brunkow,M.E., Jeffery,E.W., Hjerrild,K.A., Paeper,B., Clark,L.B.,
            Yasayko,S.A., Wilkinson,J.E., Galas,D., Ziegler,S.F. and
            Ramsdell,F.
  TITLE     Disruption of a new forkhead/winged-helix protein, scurfin, results
            in the fatal lymphoproliferative disorder of the scurfy mouse
  JOURNAL   Nat Genet 27 (1), 68-73 (2001)
   PUBMED   11138001
REFERENCE   7  (bases 1 to 1206)
  AUTHORS   Means,G.D., Toy,D.Y., Baum,P.R. and Derry,J.M.
  TITLE     A transcript map of a 2-Mb BAC contig in the proximal portion of
            the mouse X chromosome and regional mapping of the scurfy mutation
  JOURNAL   Genomics 65 (3), 213-223 (2000)
   PUBMED   10857745
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL671995.4.
            
            On Oct 19, 2007 this sequence version replaced NM_138602.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK003344.1, AK224918.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-192               AL671995.4         38217-38408
            193-410             AL671995.4         39362-39579
            411-1206            AL671995.4         39914-40709
FEATURES             Location/Qualifiers
     source          1..1206
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 3.48 cM"
     gene            1..1206
                     /gene="Praf2"
                     /gene_synonym="DXImx39e; JM4; Sfc20"
                     /note="PRA1 domain family 2"
                     /db_xref="GeneID:54637"
                     /db_xref="MGI:MGI:1859607"
     exon            1..192
                     /gene="Praf2"
                     /gene_synonym="DXImx39e; JM4; Sfc20"
                     /inference="alignment:Splign:2.1.0"
     CDS             14..550
                     /gene="Praf2"
                     /gene_synonym="DXImx39e; JM4; Sfc20"
                     /codon_start=1
                     /product="PRA1 family protein 2"
                     /protein_id="NP_613068.1"
                     /db_xref="CCDS:CCDS29971.1"
                     /db_xref="GeneID:54637"
                     /db_xref="MGI:MGI:1859607"
                     /translation="MSEVRLPPLRALDDFVLGSARLAAPDPGDPQRWCHRVINNLLYY
                     QTNYLLCFGISLALAGYIRPLHTLLSALVVVVALGVLVWAAETRAAVRRCRRSHPAAC
                     LAAVLAISLFILWAVGGAFTFLLSITAPVFLILLHASLRLRNLKNKIENKIESIGLKR
                     TPMGLLLEALGQEQEAGS"
     exon            193..410
                     /gene="Praf2"
                     /gene_synonym="DXImx39e; JM4; Sfc20"
                     /inference="alignment:Splign:2.1.0"
     exon            411..1206
                     /gene="Praf2"
                     /gene_synonym="DXImx39e; JM4; Sfc20"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcaacccgc aggatgtcgg aggtgcggct gccaccgctg cgcgccctag acgactttgt
       61 cctggggtct gcgcgcctgg cggctcctga tccaggcgat ccacaacgat ggtgtcaccg
      121 cgtcatcaac aacctcctct actaccaaac caattacctt ctctgctttg gcatcagtct
      181 tgcgctggcc gggtacattc gtccgctgca caccctcctg agtgcactgg tagtggtggt
      241 ggccctcggg gtgctggtgt gggctgctga aacccgtgca gctgtgcgcc gctgccgtcg
      301 cagccaccct gctgcctgcc tggctgcagt gcttgccatt agcctcttca ttctctgggc
      361 cgtgggtggc gccttcacct tcctgctcag catcacagcg cctgtgtttt tgatcctgct
      421 gcatgcttca ctgcgtctga gaaaccttaa aaacaagatt gagaacaaga tcgagagcat
      481 cggtctaaag cggacaccaa tgggattgct tctagaggca ctgggacagg agcaggaagc
      541 tggatcctag gaccttggca tctacaccct ggacgtagag gacccccacc ccatacccaa
      601 gaccaaccct tttcctagcc attaaaatag gtgcctagag tcctctggcc tggccaaaaa
      661 gagacacctg tgattgatca ctgcagcccc aaactagtca tctcttagcc tccagcccct
      721 gttacctagg gaccaaagtc ttcctcggtc ctgaatttga gactcagtca cctacttcca
      781 gtcttgaaac tggactttta agccagagca tctgtggcca atctcaaaac tggaccccaa
      841 gatactcctc tgacccaaat gtgggactca ctagtcttcc atacgtcaaa gctaggccct
      901 aaggcaggac attctcaaat cttgagctct aaagattttt cagaccccac acagcttgga
      961 atataggtta taagacctgg ccaaatcttg agcctaatga gtccacactg agcccttaac
     1021 cccagacgac cctagccctc agcagtccca atagcctccc tccaaccgtt aagagggtct
     1081 cttcctccct cacagtgttc tcagtatcaa ggaccaacat gtggggctgg ctagggatag
     1141 ccccaactgg gaaagggaca catataatag tgttgctaca acaataaagc ctttgaatct
     1201 caagct
//
