LOCUS       NM_001033880            2618 bp    mRNA    linear   ROD 04-AUG-2024
DEFINITION  Mus musculus protein phosphatase 4 regulatory subunit 3C1
            (Ppp4r3c1), mRNA.
ACCESSION   NM_001033880 XM_141919 XM_900700 XM_907692
VERSION     NM_001033880.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2618)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2618)
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK132812.1 and AL672285.8.
            
            On Mar 27, 2010 this sequence version replaced NM_001033880.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK132812.1, BB615034.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1057              AK132812.1         2-1058
            1058-1058           AL672285.8         20768-20768         c
            1059-2617           AK132812.1         1060-2618
            2618-2618           AL672285.8         19208-19208         c
FEATURES             Location/Qualifiers
     source          1..2618
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 39.95 cM"
     gene            1..2618
                     /gene="Ppp4r3c1"
                     /gene_synonym="4930415L06Rik; Ppp4r3c; Ppp4r3cp; Smek3p"
                     /note="protein phosphatase 4 regulatory subunit 3C1"
                     /db_xref="GeneID:245511"
                     /db_xref="MGI:MGI:3588286"
     exon            1..42
                     /gene="Ppp4r3c1"
                     /gene_synonym="4930415L06Rik; Ppp4r3c; Ppp4r3cp; Smek3p"
                     /inference="alignment:Splign:2.1.0"
     exon            43..2618
                     /gene="Ppp4r3c1"
                     /gene_synonym="4930415L06Rik; Ppp4r3c; Ppp4r3cp; Smek3p"
                     /inference="alignment:Splign:2.1.0"
     CDS             126..2567
                     /gene="Ppp4r3c1"
                     /gene_synonym="4930415L06Rik; Ppp4r3c; Ppp4r3cp; Smek3p"
                     /note="Smek homolog 3; putative SMEK homolog 3; protein
                     PPP4R3C; serine/threonine-protein phosphatase 4 regulatory
                     subunit 3C"
                     /codon_start=1
                     /product="protein PPP4R3C1"
                     /protein_id="NP_001029052.2"
                     /db_xref="CCDS:CCDS53129.1"
                     /db_xref="GeneID:245511"
                     /db_xref="MGI:MGI:3588286"
                     /translation="MTWPSEARPNINMEYRLHTVKVYVMMEDKQWKNVGTGQISSKYS
                     EQLQGVCLLVHSLSDGSPIMECKIHPNVPYQKQQGKIIIWSEAKNHGMAIHFQEPNDC
                     QEIWEDICQIQGKDPHVEITQELTDDLETFEHMPLIWNWVEMSNCEIHTLKNIAELFP
                     FVFEMPSQKERLALFLENEGYIKKLLQLFHTCEKLKNMEGLYYLHNIIKGILFLNNTR
                     LFNIMFSDEFFMDIVGCLEYDPALDQPKQYREFLTQNSKFKEVIPIIHSQLRQKIQQT
                     YRMQYVHDIMLPTPSIFQTNLLSDITTMIFFNKINIITMIQEDENFLLEVFSQLKDNS
                     IGDERRIELLLFLKEFCEFAKTLQSQKKNELLKTLIKLGIMSVLKVVVHMNDYQIQVG
                     ALDIFAYLVEYSPCLVRAYAMEEAQDSEDNDDLLINIMIKQMICDFDPEFSQGIIMTA
                     VLHELLNPENMRTTAKGCERKVFLNFFYKRYMRKLIAPILSIRVKYDSNDNRVYICPD
                     NYQNAQLLGAVLEILTFCVQYHSMYIKHYIFSNNLLRSILVLMSSKHTFLILCAVRFM
                     RKIIGLKDKMYNHYIIKKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRKENITSLI
                     VNIVENFFRAFKSIEYVQTFKGLKTKYEEEKKRKSQRRKNLHSIMHPKMYYRHIEDME
                     VKVKADICCRGIIEEEERQGGGEEGAILPMGSDFTNNYDIFMKNKDTNESESAIEGQK
                     IKSSEASECCPSHGDASATRMSRSHCSSLVPLVDYLYDTDDENDDDPYGNDKHEDEHE
                     DEDEEPPPKRPNLST"
ORIGIN      
        1 ataaccaagg cgggctcagc gactcaagag ctcctgagag agaattttga ctgcggcaac
       61 agttctggcc aaggtagcaa gggacagcaa cttctggcaa gtgttcaaaa agcaaggtct
      121 gcaaaatgac gtggcctagc gaggcaaggc caaatatcaa catggagtac agacttcata
      181 cagtaaaagt ctacgtcatg atggaagata agcagtggaa aaacgtaggc acagggcaaa
      241 tttcatccaa atacagtgaa cagctccagg gtgtgtgcct gcttgttcac tcattatcag
      301 atggatcacc aattatggag tgcaagatac atcctaatgt gccctatcag aaacaacaag
      361 ggaaaataat aatttggtct gaagctaaga accacggcat ggcaatacat ttccaggaac
      421 caaatgattg tcaagagatc tgggaagata tctgccagat tcaaggtaaa gacccacatg
      481 tagaaatcac acaagaactt actgatgatc tggaaacttt tgaacatatg cctctgatct
      541 ggaattgggt tgagatgtca aactgtgaaa tccatacact taaaaatatc gcagagttat
      601 ttccttttgt ctttgaaatg ccaagccaga aagaaaggct ggcactgttc ttagaaaatg
      661 aaggctacat taaaaaattg ctacagctgt ttcacacttg tgaaaaactg aagaacatgg
      721 aaggattata ctatttgcat aacattatta aaggaatcct gtttctaaac aacacacgtt
      781 tgtttaacat catgttttct gatgaatttt tcatggatat tgtaggatgc cttgaatatg
      841 accctgcttt ggatcagcca aagcagtaca gggaattctt gactcaaaat tcgaaattca
      901 aggaagttat accaataata cactctcaac ttaggcaaaa aattcaacag acctacagaa
      961 tgcaatatgt tcatgatatt atgttgccta caccatccat atttcaaacg aatcttcttt
     1021 ctgatattac cactatgatt tttttcaaca aaattaatat aattaccatg attcaggaag
     1081 atgaaaattt tttgctcgaa gttttttctc agttaaaaga taacagtata ggtgatgaaa
     1141 ggcggattga attgttatta ttcctcaagg aattctgtga atttgctaag acattacagt
     1201 ctcaaaagaa aaatgagtta ctgaaaacac ttataaagtt aggaatcatg agtgtgctga
     1261 aagttgtagt gcacatgaat gattaccaaa ttcaagtagg tgctctagat atatttgctt
     1321 atctagtaga atatagtcca tgcttagtcc gagcttatgc aatggaagaa gctcaggaca
     1381 gtgaagataa tgatgacctt ctcattaata taatgatcaa gcaaatgatc tgtgattttg
     1441 atcctgaatt ttcacaaggc atcattatga cagcagttct tcatgaactt cttaatccag
     1501 aaaatatgcg taccacagct aagggatgtg aaagaaaggt atttctgaat ttcttctata
     1561 aacgttacat gaggaaactt atagcaccaa ttttgtctat cagagtaaaa tatgacagca
     1621 atgataatag ggtttacatt tgtcctgata attatcaaaa tgcacaattg cttggagcag
     1681 ttttagaaat actcacattt tgtgtgcaat atcactcaat gtacataaaa cattacattt
     1741 ttagcaacaa cttgctcagg agtatcttgg tgctaatgag ttcaaaacac acttttctga
     1801 ttttgtgtgc tgttcgtttt atgagaaaga ttattggcct caaagataaa atgtacaatc
     1861 attacataat taagaaaaac ttgtttgaac cagttgtaaa tgcttttatg cataatggac
     1921 atcggtacaa tatgttaaat tcagctatta ttgagctatt tgaatttata agaaaagaaa
     1981 acatcacgtc tctgattgta aacattgtgg aaaatttttt tagggctttt aaatcaattg
     2041 agtatgtcca gacctttaaa ggtttgaaaa ctaaatatga agaagagaag aaaagaaaaa
     2101 gtcaaagaag aaaaaatcta catagtataa tgcaccccaa aatgtattac agacatatcg
     2161 aagatatgga ggtaaaggtc aaagcagaca tatgttgtag aggaatcata gaagaagaag
     2221 aaagacaagg agggggagaa gaaggagcta ttctaccaat gggaagtgac tttacaaata
     2281 attatgacat atttatgaaa aataaagata caaatgaaag tgaaagtgca atagaaggcc
     2341 aaaagataaa atcatctgaa gcttctgaat gttgtccatc tcatggggat gcttctgcta
     2401 ccagaatgag taggtcacac tgtagcagcc tggttccttt agtggattat ctatatgata
     2461 ctgatgatga gaatgatgat gatccttatg gtaatgataa acatgaagat gaacatgagg
     2521 atgaagatga agaacctccc cccaaaagac ctaatcttag tacatgagat tttatgaggc
     2581 cttcaactct acgttcaaat aaaattctat aaatatca
//
