LOCUS       NM_029741               4882 bp    mRNA    linear   ROD 26-NOV-2024
DEFINITION  Mus musculus protein tyrosine phosphatase, receptor type, f
            polypeptide (PTPRF), interacting protein (liprin), alpha 3
            (Ppfia3), mRNA.
ACCESSION   NM_029741 XM_485929
VERSION     NM_029741.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4882)
  AUTHORS   Emperador-Melero,J., Andersen,J.W., Metzbower,S.R., Levy,A.D.,
            Dharmasri,P.A., de Nola,G., Blanpied,T.A. and Kaeser,P.S.
  TITLE     Distinct active zone protein machineries mediate Ca2+ channel
            clustering and vesicle priming at hippocampal synapses
  JOURNAL   Nat Neurosci 27 (9), 1680-1694 (2024)
   PUBMED   39160372
REFERENCE   2  (bases 1 to 4882)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   3  (bases 1 to 4882)
  AUTHORS   Banerjee,A., Imig,C., Balakrishnan,K., Kershberg,L., Lipstein,N.,
            Uronen,R.L., Wang,J., Cai,X., Benseler,F., Rhee,J.S., Cooper,B.H.,
            Liu,C., Wojcik,S.M., Brose,N. and Kaeser,P.S.
  TITLE     Molecular and functional architecture of striatal dopamine release
            sites
  JOURNAL   Neuron 110 (2), 248-265 (2022)
   PUBMED   34767769
REFERENCE   4  (bases 1 to 4882)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 4882)
  AUTHORS   Emperador-Melero,J., Wong,M.Y., Wang,S.S.H., de Nola,G.,
            Nyitrai,H., Kirchhausen,T. and Kaeser,P.S.
  TITLE     PKC-phosphorylation of Liprin-alpha3 triggers phase separation and
            controls presynaptic active zone structure
  JOURNAL   Nat Commun 12 (1), 3057 (2021)
   PUBMED   34031393
  REMARK    GeneRIF: PKC-phosphorylation of Liprin-alpha3 triggers phase
            separation and controls presynaptic active zone structure.
            Publication Status: Online-Only
REFERENCE   6  (bases 1 to 4882)
  AUTHORS   Joshi,C.S., Suryawanshi,A.R., Khan,S.A., Balasinor,N.H. and
            Khole,V.V.
  TITLE     Liprin alpha3: a putative estrogen regulated acrosomal protein
  JOURNAL   Histochem Cell Biol 139 (4), 535-548 (2013)
   PUBMED   23124857
REFERENCE   7  (bases 1 to 4882)
  AUTHORS   Zurner,M., Mittelstaedt,T., tom Dieck,S., Becker,A. and Schoch,S.
  TITLE     Analyses of the spatiotemporal expression and subcellular
            localization of liprin-alpha proteins
  JOURNAL   J Comp Neurol 519 (15), 3019-3039 (2011)
   PUBMED   21618221
REFERENCE   8  (bases 1 to 4882)
  AUTHORS   Zurner,M. and Schoch,S.
  TITLE     The mouse and human Liprin-alpha family of scaffolding proteins:
            genomic organization, expression profiling and regulation by
            alternative splicing
  JOURNAL   Genomics 93 (3), 243-253 (2009)
   PUBMED   19013515
REFERENCE   9  (bases 1 to 4882)
  AUTHORS   Masuda,T., Kai,N., Sakuma,C., Kobayashi,K., Koga,H. and Yaginuma,H.
  TITLE     Laser capture microdissection and cDNA array analysis for
            identification of mouse KIAA/FLJ genes differentially expressed in
            the embryonic dorsal spinal cord
  JOURNAL   Brain Res 1249, 61-67 (2009)
   PUBMED   19026994
REFERENCE   10 (bases 1 to 4882)
  AUTHORS   Trinidad,J.C., Specht,C.G., Thalhammer,A., Schoepfer,R. and
            Burlingame,A.L.
  TITLE     Comprehensive identification of phosphorylation sites in
            postsynaptic density preparations
  JOURNAL   Mol Cell Proteomics 5 (5), 914-922 (2006)
   PUBMED   16452087
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK147645.1, BC058404.1, AK010782.1 and AW060329.1.
            
            On Nov 24, 2007 this sequence version replaced NM_029741.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB516303.1, SRR7974084.1772.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1361              AK147645.1         1-1361
            1362-3976           BC058404.1         816-3430
            3977-4641           AK010782.1         272-936
            4642-4882           AW060329.1         1-241               c
FEATURES             Location/Qualifiers
     source          1..4882
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 29.26 cM"
     gene            1..4882
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /note="protein tyrosine phosphatase, receptor type, f
                     polypeptide (PTPRF), interacting protein (liprin), alpha
                     3"
                     /db_xref="GeneID:76787"
                     /db_xref="MGI:MGI:1924037"
     exon            1..361
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            362..616
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            617..718
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            719..883
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            884..958
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            959..1033
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1034..1255
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1256..1402
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1403..1537
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1538..1621
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1622..1753
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1754..1816
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1817..1896
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1897..2041
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2042..2229
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2230..2452
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2453..2616
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2617..2744
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2745..2838
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2839..2920
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2921..3121
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3122..3184
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3185..3211
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3212..3387
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3388..3485
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3486..3661
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3662..3730
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3731..3902
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3903..3974
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3975..4866
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      4717
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /note="major polyA site"
     regulatory      4847..4852
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      4866
                     /gene="Ppfia3"
                     /gene_synonym="2410127E16Rik"
                     /note="major polyA site"
ORIGIN      
        1 gggatctgtg gggggggagg gggagggagg agaatttttt ggggggggag aaggtgggat
       61 ttgggggggc gctggtgggc acccctggat ctggcgactg cggcctcgcg gggggaggct
      121 gtacggtgac aagggcaggg ggctatttta gggagtaaga aggctgtgag accgtgaggg
      181 ggaggggggt ccccagcgct ggagccggag caagagacgc tgagcccgcg ctagcggcgt
      241 agacagggtt ccagagctcc agatccgggc cccggccgcc gccaggggcc ccgcccggtg
      301 cccctacccc accccgcgtc cctcctgcag cccagctcct cccgcagtcg tcgcggacca
      361 ggccggcacc gccgccatga tgtgcgaggt gatgcctacc atcagcgagg atggccggcg
      421 gggctcggcg ctgggcccgg acgaggccgg cggcgagctg gagcgcctca tggtcacgat
      481 gctcacagag cgcgagcgcc tgctggagac gctgcgagag gcgcaggacg ggttggcgac
      541 agcgcagcta cgactgcgcg agctcggcca cgagaaggac tcgctgcagc ggcagctcag
      601 catcgctctg cctcaggagt ttgcggctct gacgaaggag cttaacttat gtcgggaaca
      661 gcttctggag agggaagaag agatcgcaga gctgaaggcg gagcgaaaca acacccggct
      721 ccttctggaa caccttgagt gcctggtgtc caggcacgaa cgttccctgc gaatgactgt
      781 ggtgaaacgc caagcccagt cccctggagg ggtctcctct gaggtggagg tgctcaaggc
      841 tctaaaatcc ctctttgaac accacaaagc cctggatgag aaggtccggg aaagattgcg
      901 gatggcattg gagagggtag cagtgctgga ggaggagctg gaactgagca atcaggaggc
      961 cctgaacctt cgagaccagc tatctagaag gcggtcagga ctggaggagc caggcaagga
     1021 tggggatgga cagacccttg ccaatggcct aggtcctgtt ggagaatcca accggcgcac
     1081 ggccgagctg gaggaagctc tggaacggca gcgtgcagag gtgtgccagc tgcgggaacg
     1141 cctggcggtg ctgtgccgtc agatgagcca gctggaggag gagctgggca ctgctcaccg
     1201 cgagctgggt aaggccgagg aagctaactc caagctgcag cgcgacctca aggaggccct
     1261 ggctcagcgg gaagatatgg aagaacgcat caccacactg gagaagcgct acctgagtgc
     1321 ccagcgtgaa gccacatctc tacatgatgc caacgacaag ctggagaatg agttggccag
     1381 caaagagtcc ctgtacagac agagtgaaga gaagagccgt cagctggcag agtggctgga
     1441 tgacgccaag cagaagctgc aacagaccct gcagaaggcc gagaccttac cagagataga
     1501 ggctcagctg gcgcagcgcg tggctgctct gaacaaggct gaggaacgcc atgggaactt
     1561 tgaagagagg cttcggcagc tggaggcaca gctggaggag aagaaccagg agctgcagcg
     1621 ggcccggcag agggagaaaa tgaacgatga ccacaataag cgactgtcag agacggtgga
     1681 caagctgcta agtgaatcca acgaacggtt acagcttcac ctcaaagaac gtatgggggc
     1741 actagaggag aagaactcac tgagtgagga gattgctaac atgaagaaac ttcaagatga
     1801 gctgctgctg aataaggagc agctcttggc tgagatggaa cggatgcaga tggagatcga
     1861 ccagctccgg ggaaggccgc cctcctccta ttccaggtcc cttcctggca gtgccctgga
     1921 gctccgttac tcccaggcac caaccttacc ttctggtgcc cctctggatc cttatggggc
     1981 tggcagtggc cgggcaggca agaggggccg ctggtcgggg gccaaggatg agtcttccaa
     2041 ggactgggat cggtctgccc ctgctgggtc catcccaccc ccgttccctg gagagctgga
     2101 tggctcagat gaagaggagg ccgaggggat gttcggggct gagctgctgt cccccagtgg
     2161 gcaagctgat gtgcagacgc tcgctatcat gctccaggag caattggaag ccatcaacaa
     2221 ggaaatcaag ctaattcaag aagagaaaga gacgacagag cagcgtgcag aagagctgga
     2281 gagccgggtg tccagttctg gccttgactc gctgggccgg taccgaagca gctgctcact
     2341 gccaccctcc ctcaccacct ccaccctcgc cagcccctca cctcccagct ctggccattc
     2401 cacccctcgt ctggcacccc ccagtcctgc ccgggagggt actgacaaga ccaaccatgt
     2461 ctctaaggag gaagctggag tcccacgagg ggagggtcca gccgttccag gagacacccc
     2521 accacccacg ccccgctctg cccgtcttga gaggatggcc caggctttgg cgctgcaagc
     2581 agggtcaccg gaagatggag cacctccccg gggaagtgag agcaccccag attcccttca
     2641 caaagccccc aagaggaaga gcatcaagtc gtccataggc cggctcttcg gcaagaaaga
     2701 gaagggccgg atgggacccc caggccggga gagtgtttct ctggccggga caccctcaga
     2761 tgagacactg gccactgacc ctctggggct agccaagctg actggtccag gagataagga
     2821 caggaggaac aagaggaagc acgaacttct ggaagaggcc tgtcgccagg gcctgccttt
     2881 tgctgcctgg gatggaccca ccgtggtctc ctggctggag ctctgggtgg gcatgccggc
     2941 gtggtacgtg gccgcctgcc gggccaatgt caagagcggc gccatcatgg ccaacctgtc
     3001 agacacggag atccagaggg agatcggcat cagcaatcca ctgcacaggc tcaagctacg
     3061 cctcgccatt caggagatgg tgtcgctcac atcaccctcg gctcctgcct cctcacgcac
     3121 tcccacagga aacgtgtgga tgacacacga ggagatggag tctctgacgg cagctacaaa
     3181 acccgagacc aaggagatca gctgggagca gatcctggca tatggcgaca tgaaccacga
     3241 gtgggtgggg aacgactggc tgcccagcct tgggctgccc cagtaccgaa gctacttcat
     3301 ggagtcgcta gttgatgcgc ggatgttgga ccatttgaac aagaaggaac tgcgaggcca
     3361 actcaagatg gtggacagct tccacagggt tagtctgcac tatggtatta tgtgcctgaa
     3421 gcggctcaac tatgaccgga aggacctgga gcggaggagg gaagaaagcc agacccaaat
     3481 cagagacgtg atggtgtggt ccaacgaacg ggtcatgggt tgggtgtctg gtcttggcct
     3541 gaaggaattt gctacgaatc tcacggagag tggggtgcac ggcgcactgt tggctctgga
     3601 tgaaaccttc gactactccg atctggcctt gcttctacag atacctacgc agaatgcaca
     3661 agctcggcaa ctgctggaga aagaattcag taacctcatc tccttaggca cagacagacg
     3721 gctggatgag gacagtgcca agtccttcag ccgctcccca tcctggagga agatgttccg
     3781 cgagaaggac ctccggggtg taacccccga ttcagccgag atgttacccc ccaactttcg
     3841 ctcagctgcc gcaggagccc taggctctcc cgggcttcct ctccgcaaac tgcagcctga
     3901 aggccagact tctgggagtt cgcgagcaga tggtgtttcg gtccggactt actcctgcta
     3961 gtgtgcacct ccagagcatt gtctagcagg agaccgccgt gagggagctc gccctacgga
     4021 ctgcaccacc tatacatacc agccgggtgt gcgtgttccc gcctcccaaa tggactgggc
     4081 ctggaccaaa ccataagaaa tggactgaaa gggggcagcc gaagaagagg acaggaagaa
     4141 atcccacccc aaacttccgt ctcccttttc tcaactttgt aatttattga tgatccgttt
     4201 cgaatgggag tcaggcgccc tgcacctgcg gaaagggggc ggggcttccc tctcgggccg
     4261 catgcgggga gatgccaccc ctcccctttc tattgcccag tcgcggggcc caagtcttcc
     4321 ttctccgtcc gctaggaggg gaggggagac tcgctgctac aagcctcgcc ccattcccca
     4381 gccccgtgcc actcagtcct gccccgctgc gtcttgtcgc cagtcctccg ggtcatctgc
     4441 aagcggggtt ccctgaccct cccccctgtc tcgtgttccc cggggcctcc ccgcccccgt
     4501 gctatggcgg tgtctgtgcc caagggtcag ggacgcagca ctgcgttccc atttcccctc
     4561 tggctccggg gtttgcatgg gaaaatccct ctgtcaacta tgccgctggc gatgtggctg
     4621 gggagaggac ggacaatggg ggagccccca ccccgactcg gcctcttggc tccaggcgtt
     4681 actcagtgat cacgggtaaa gacctactgt ttcaaaagct ctggtggtga ccagcctttt
     4741 tttgagacag ggtctcactt tgtagtcctg gctggcctgg aactcaatgt agactaggct
     4801 agcctcgaat ttacagagat ccgcctgcct ctgactctgc actgagatta aaggtgtgtg
     4861 ccaccaaaaa aaaaaaaaaa aa
//
