LOCUS       NM_173449               2476 bp    mRNA    linear   ROD 06-APR-2024
DEFINITION  Mus musculus protein phosphatase 2C-like domain containing 1
            (Pp2d1), mRNA.
ACCESSION   NM_173449
VERSION     NM_173449.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2476)
  AUTHORS   Robertson,M.J., Kent,K., Tharp,N., Nozawa,K., Dean,L., Mathew,M.,
            Grimm,S.L., Yu,Z., Legare,C., Fujihara,Y., Ikawa,M., Sullivan,R.,
            Coarfa,C., Matzuk,M.M. and Garcia,T.X.
  TITLE     Large-scale discovery of male reproductive tract-specific genes
            through analysis of RNA-seq datasets
  JOURNAL   BMC Biol 18 (1), 103 (2020)
   PUBMED   32814578
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC131785.3 and
            AC165960.4.
            
            On May 2, 2007 this sequence version replaced NM_173449.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK076579.1, SRR5189685.157060.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-273               AC131785.3         84826-85098         c
            274-1337            AC131785.3         60588-61651         c
            1338-2476           AC165960.4         190464-191602       c
FEATURES             Location/Qualifiers
     source          1..2476
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 27.83 cM"
     gene            1..2476
                     /gene="Pp2d1"
                     /gene_synonym="4921523A10Rik"
                     /note="protein phosphatase 2C-like domain containing 1"
                     /db_xref="GeneID:110332"
                     /db_xref="MGI:MGI:3612067"
     exon            1..273
                     /gene="Pp2d1"
                     /gene_synonym="4921523A10Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             242..2104
                     /gene="Pp2d1"
                     /gene_synonym="4921523A10Rik"
                     /note="PP2C-like domain-containing protein C3orf48
                     homolog"
                     /codon_start=1
                     /product="protein phosphatase 2C-like domain-containing
                     protein 1"
                     /protein_id="NP_775625.1"
                     /db_xref="CCDS:CCDS37653.1"
                     /db_xref="GeneID:110332"
                     /db_xref="MGI:MGI:3612067"
                     /translation="MNWELYSSPLRVFWRSKVWDEKTSTFTSDENLKIGKMVGKRRRP
                     RPKRSIDLEDSTEQLISGDMVTFPCSVCYRELNKARNFLHKKHHNALSMLGFQWMGGR
                     QPKPKLVSLHRECIISNLLRSSTYNEKVLHNVNYAFEFLWKKQVPSYFKLCDKVGETS
                     TYSPNSNHLMIKGIAICSNNNSAWKAEPNCKFTVVNDFGDKANVCFFGLFDSHYGYAA
                     ADLASKEFQVLLLHQLSIQDPSYQMTAEQKQLINSFDTVFREEYRAREEAFSSTYKTF
                     RTSRREYEDTHKAFAKAFWRMDRLLRLGRNETSRVRWSGCSALTCILEGGIKNPHANK
                     DWEKTYQQGSTSLPFQKTPQIISGVLHLANAGNVQAVLCRNGKGFCLTKEHSTRNTKE
                     RRRVLYSEAVISSDDPYGLLDGHIKTTRGLGFHGNLRLKKSIIPAPQTISVPIDDLCQ
                     FLILATNGLWQVLDKKEVTALVITLFHAYKETHVPRPKSKPWPPIGLLSPPDSNIRVL
                     FQYQPENEDIMSTADGTKGLSDSIYAEAYTHQGTFSPKVTPYDPCSTKENSSLPTIDS
                     KQENEKELCIKNFYKGAAEYIGCELVSAAIEGGSRDSITVMVMFLNGSEYHRLT"
     exon            274..1337
                     /gene="Pp2d1"
                     /gene_synonym="4921523A10Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1338..2476
                     /gene="Pp2d1"
                     /gene_synonym="4921523A10Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actgtaacag ggaacctcca tcaatcagaa ggcccacttc tgcctcctta ctacctcctt
       61 cactgcttgc cataaccaca tctgcttcac ctctcctccc tccctcctcc ctccctcctc
      121 ttcctccctt ccttctcttc ctattttctc tcctatacca tctcacctgt gctcaagata
      181 gacaaaggct ctgcaaatag agtaaagtaa ggacagagaa aagtattcca tccaaaggaa
      241 catgaattgg gaactgtatt cttctccttt aagagtgttt tggagatcaa aagtgtggga
      301 tgagaaaact tcaacattta cttctgatga gaatctcaag attggcaaaa tggttggcaa
      361 aaggagaagg cctagaccaa agcgctccat cgacctggag gattccactg agcagctgat
      421 ttctggtgac atggtcacat tcccctgctc tgtctgctac cgagaactga acaaagctag
      481 gaattttctc cataagaaac atcacaatgc tctgagtatg ctgggtttcc agtggatggg
      541 agggaggcaa ccaaagccca aactggtcag tcttcataga gagtgtataa tctctaacct
      601 tttgagatct tctacataca atgaaaaagt ccttcacaat gtgaactacg catttgagtt
      661 tctttggaag aaacaagttc catcatactt caaactttgt gataaggttg gcgagacttc
      721 tacgtattct ccaaacagca accatctgat gattaaaggt atagccatct gtagcaataa
      781 taattcagcc tggaaagcgg agccgaactg taaattcacg gtcgtgaacg attttggtga
      841 taaggccaat gtgtgctttt tcggtttatt tgatagccat tacggttatg cagcagcaga
      901 cctggcatca aaggagtttc aggttttact tctccatcaa ttgtctatac aggatccttc
      961 ctaccaaatg acagctgagc agaagcaact catcaattcc tttgacacgg tgttcaggga
     1021 ggaatacaga gccagagaag aggccttctc ttccacatac aaaaccttca gaactagtag
     1081 acgggagtat gaggatacac acaaagcctt tgcaaaggca ttttggagaa tggataggct
     1141 tctacggctt ggaaggaatg agacttcccg ggttcgctgg agcggctgct cggcactcac
     1201 ttgtatatta gagggtggga ttaagaaccc acatgctaat aaagactggg aaaaaaccta
     1261 tcagcagggt tccaccagtc ttcccttcca gaagactcca cagatcatat ctggagtact
     1321 acacctggca aatgctggaa acgtgcaagc agtcttatgc agaaatggaa aagggttttg
     1381 cctgaccaag gaacacagta cacgaaacac caaagaaaga agaagagtcc tttacagcga
     1441 agcagtgatc agttcagatg acccctatgg cctcctggat gggcacatca aaaccacccg
     1501 gggtcttgga ttccatggaa acctcagact aaaaaagtcc attattccag caccgcaaac
     1561 aatctctgtc cctatagatg atctatgtca gtttctcatc ttagccacta atggactttg
     1621 gcaagttttg gacaagaagg aagtcactgc actggtaatc accttgtttc atgcatataa
     1681 agaaacccat gttcctcgcc ctaaaagcaa accctggcca cctataggcc ttctttcccc
     1741 accagacagt aacatccgag tgctgttcca gtaccagcct gaaaatgaag acattatgtc
     1801 aactgcagat gggacgaaag ggctatctga ctcaatatat gctgaagctt acactcatca
     1861 gggtacattt tctccaaaag tgacccctta tgacccttgt agcacaaaag aaaatagcag
     1921 cttacccact atagacagta agcaggaaaa tgagaaagaa ctatgtatta agaatttcta
     1981 caaaggtgca gctgagtaca ttggctgtga acttgtaagt gctgcaatag aagggggttc
     2041 cagagacagc atcactgtta tggtaatgtt tctcaatggg agcgagtatc acaggctgac
     2101 ataaaaacat tccaatgacc tagaacagca aacagtgcta caaagactcc cgtgaaaacc
     2161 attccttaga ccgggaagga aatacaaaag ctgcagctta tatatcatgc gtattatggt
     2221 gtatacttta tgtcaaagac agagaaaact cagtgttgct ttttacatca ctttattcca
     2281 acctgagcac ctcaatataa aactaaacac cggtgaactg ttctccttac tagttttgag
     2341 ttactgtaaa atgtacaagt tctgctagca gatcaacact taaatagatt aaatcatctg
     2401 acacatggta gatttcatat aatgaaaata cctaaaataa ttagtgcaat atactgatta
     2461 aaataaaatg gacttc
//
