LOCUS       NM_011293                586 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus polymerase (RNA) II (DNA directed) polypeptide J
            (Polr2j), mRNA.
ACCESSION   NM_011293
VERSION     NM_011293.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Rong,Y., Ji,S.Y., Zhu,Y.Z., Wu,Y.W., Shen,L. and Fan,H.Y.
  TITLE     ZAR1 and ZAR2 are required for oocyte meiotic maturation by
            regulating the maternal transcriptome and mRNA translational
            activation
  JOURNAL   Nucleic Acids Res 47 (21), 11387-11402 (2019)
   PUBMED   31598710
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Zhang,M., Chen,D., Xia,J., Han,W., Cui,X., Neuenkirchen,N.,
            Hermes,G., Sestan,N. and Lin,H.
  TITLE     Post-transcriptional regulation of mouse neurogenesis by Pumilio
            proteins
  JOURNAL   Genes Dev 31 (13), 1354-1369 (2017)
   PUBMED   28794184
REFERENCE   3  (bases 1 to 586)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   4  (bases 1 to 586)
  AUTHORS   Corbi,N., Bruno,T., De Angelis,R., Di Padova,M., Libri,V., Di
            Certo,M.G., Spinardi,L., Floridi,A., Fanciulli,M. and Passananti,C.
  TITLE     RNA polymerase II subunit 3 is retained in the cytoplasm by its
            interaction with HCR, the psoriasis vulgaris candidate gene product
  JOURNAL   J Cell Sci 118 (Pt 18), 4253-4260 (2005)
   PUBMED   16141233
REFERENCE   5  (bases 1 to 586)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   6  (bases 1 to 586)
  AUTHORS   Nelson,P.S., Pritchard,C., Abbott,D. and Clegg,N.
  TITLE     The human (PEDB) and mouse (mPEDB) Prostate Expression Databases
  JOURNAL   Nucleic Acids Res 30 (1), 218-220 (2002)
   PUBMED   11752298
REFERENCE   7  (bases 1 to 586)
  AUTHORS   Grandemange,S., Schaller,S., Yamano,S., Du Manoir,S.,
            Shpakovski,G.V., Mattei,M.G., Kedinger,C. and Vigneron,M.
  TITLE     A human RNA polymerase II subunit is encoded by a recently
            generated multigene family
  JOURNAL   BMC Mol Biol 2, 14 (2001)
   PUBMED   11747469
REFERENCE   8  (bases 1 to 586)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
REFERENCE   9  (bases 1 to 586)
  AUTHORS   Nishi,Y., Yamamoto,K., Yao,Y., Yamamoto,M., Nogi,Y., Matsuo,H. and
            Muramatsu,M.
  TITLE     Isolation and characterization of cDNA encoding mouse RNA
            polymerase II subunit RPB14
  JOURNAL   Gene 187 (2), 165-170 (1997)
   PUBMED   9099876
REFERENCE   10 (bases 1 to 586)
  AUTHORS   Korobko,I.V., Yamamoto,K., Nogi,Y. and Muramatsu,M.
  TITLE     Protein interaction cloning in yeast of the mouse third largest RNA
            polymerase II subunit, mRPB31
  JOURNAL   Gene 185 (1), 1-4 (1997)
   PUBMED   9034305
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK158610.1 and DV065741.1.
            
            On May 15, 2008 this sequence version replaced NM_011293.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK158610.1, CN836797.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-237               AK158610.1         2-238
            238-586             DV065741.1         272-620
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 75.8 cM"
     gene            1..586
                     /gene="Polr2j"
                     /gene_synonym="14.5kDa; Polr2i; Rpb11a; Rpo2-4"
                     /note="polymerase (RNA) II (DNA directed) polypeptide J"
                     /db_xref="GeneID:20022"
                     /db_xref="MGI:MGI:109582"
     exon            1..115
                     /gene="Polr2j"
                     /gene_synonym="14.5kDa; Polr2i; Rpb11a; Rpo2-4"
                     /inference="alignment:Splign:2.1.0"
     CDS             63..416
                     /gene="Polr2j"
                     /gene_synonym="14.5kDa; Polr2i; Rpb11a; Rpo2-4"
                     /EC_number="2.7.7.6"
                     /note="polymerase (RNA) II (DNA directed) polypeptide I;
                     RPB14; RNA polymerase II subunit B11; DNA-directed RNA
                     polymerase II subunit J; DNA-directed RNA polymerase II
                     13.3 kDa polypeptide; RNA polymerase II 13.3 kDa subunit;
                     RNA polymerase II 4 (14 kDa subunit); RNA polymerase II
                     subunit RPB14"
                     /codon_start=1
                     /product="DNA-directed RNA polymerase II subunit RPB11"
                     /protein_id="NP_035423.2"
                     /db_xref="CCDS:CCDS19751.1"
                     /db_xref="GeneID:20022"
                     /db_xref="MGI:MGI:109582"
                     /translation="MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGN
                     IIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLE
                     ERFRVAIKDKQEGIE"
     exon            116..205
                     /gene="Polr2j"
                     /gene_synonym="14.5kDa; Polr2i; Rpb11a; Rpo2-4"
                     /inference="alignment:Splign:2.1.0"
     exon            206..380
                     /gene="Polr2j"
                     /gene_synonym="14.5kDa; Polr2i; Rpb11a; Rpo2-4"
                     /inference="alignment:Splign:2.1.0"
     exon            381..586
                     /gene="Polr2j"
                     /gene_synonym="14.5kDa; Polr2i; Rpb11a; Rpo2-4"
                     /inference="alignment:Splign:2.1.0"
     regulatory      563..568
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Polr2j"
                     /gene_synonym="14.5kDa; Polr2i; Rpb11a; Rpo2-4"
                     /note="hexamer: AATAAA"
     polyA_site      577
                     /gene="Polr2j"
                     /gene_synonym="14.5kDa; Polr2i; Rpb11a; Rpo2-4"
                     /note="major polyA site"
     polyA_site      586
                     /gene="Polr2j"
                     /gene_synonym="14.5kDa; Polr2i; Rpb11a; Rpo2-4"
                     /note="major polyA site"
ORIGIN      
        1 ggggctctgt tggcggaagg agactgtggg ttggtgtcgg ggagcgagag cgcggcgcta
       61 ggatgaacgc tcctccggcc ttcgagtcgt tcttgctctt cgagggcgag aagaaaatca
      121 ccattaacaa ggacactaag gttcccaacg cctgcttgtt caccatcaac aaagaagacc
      181 acactctggg gaacatcatt aaatcgcagc tgttgaagga cccgcaggtg ctgtttgctg
      241 gctacaaagt ccctcacccc ttggagcaca agatcatcat tcgtgtgcag accaccccag
      301 actacagtcc ccaggaggct ttcaccaacg ccatcacaga cctcatcagc gagctctccc
      361 ttctggagga gcgattccgg gtggccatca aggacaagca agaaggaatt gagtagcagc
      421 tgaaagaagc gttgcttagt ggctggaagg ctggcacata ctcctcaggg cccttcagtt
      481 taccacatgg cgacagccac tctcagctct ctagctgggc acggggctct gccccattct
      541 gtacatagac tgttgttttc ctaataaaag cagagcagaa aatggg
//
