LOCUS       NM_027259                707 bp    mRNA    linear   ROD 19-NOV-2024
DEFINITION  Mus musculus polymerase (RNA) II (DNA directed) polypeptide I
            (Polr2i), mRNA.
ACCESSION   NM_027259 XM_001000377 XM_001000412 XM_001000426 XM_133304
            XM_899509 XM_899531 XM_915179 XM_923611 XM_923618
VERSION     NM_027259.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Iyyappan,R., Aleshkina,D., Ming,H., Dvoran,M., Kakavand,K.,
            Jansova,D., Del Llano,E., Gahurova,L., Bruce,A.W., Masek,T.,
            Pospisek,M., Horvat,F., Kubelka,M., Jiang,Z. and Susor,A.
  TITLE     The translational oscillation in oocyte and early embryo
            development
  JOURNAL   Nucleic Acids Res 51 (22), 12076-12091 (2023)
   PUBMED   37950888
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 707)
  AUTHORS   Yoshikawa,T., Piao,Y., Zhong,J., Matoba,R., Carter,M.G., Wang,Y.,
            Goldberg,I. and Ko,M.S.
  TITLE     High-throughput screen for genes predominantly expressed in the ICM
            of mouse blastocysts by whole mount in situ hybridization
  JOURNAL   Gene Expr Patterns 6 (2), 213-224 (2006)
   PUBMED   16325481
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC062812.1.
            
            On or before Jul 24, 2006 this sequence version replaced
            XM_915179.2, XM_923618.2, XM_923611.2, XM_133304.7, XM_899531.2,
            XM_899509.2, XM_001000426.1, XM_001000412.1, XM_001000377.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC062812.1, DV060200.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 17.34 cM"
     gene            1..707
                     /gene="Polr2i"
                     /gene_synonym="2810002B19Rik"
                     /note="polymerase (RNA) II (DNA directed) polypeptide I"
                     /db_xref="GeneID:69920"
                     /db_xref="MGI:MGI:1917170"
     exon            1..331
                     /gene="Polr2i"
                     /gene_synonym="2810002B19Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             273..650
                     /gene="Polr2i"
                     /gene_synonym="2810002B19Rik"
                     /EC_number="2.7.7.6"
                     /note="RPB14.5; RNA polymerase II subunit B9; DNA-directed
                     RNA polymerase II subunit I; RNA polymerase II 14.5 kDa
                     subunit"
                     /codon_start=1
                     /product="DNA-directed RNA polymerase II subunit RPB9"
                     /protein_id="NP_081535.1"
                     /db_xref="CCDS:CCDS21084.1"
                     /db_xref="GeneID:69920"
                     /db_xref="MGI:MGI:1917170"
                     /translation="MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDY
                     QQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSA
                     RAEDAMRLYYVCTAPHCGHRWTE"
     exon            332..386
                     /gene="Polr2i"
                     /gene_synonym="2810002B19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            387..460
                     /gene="Polr2i"
                     /gene_synonym="2810002B19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            461..535
                     /gene="Polr2i"
                     /gene_synonym="2810002B19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            536..587
                     /gene="Polr2i"
                     /gene_synonym="2810002B19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            588..690
                     /gene="Polr2i"
                     /gene_synonym="2810002B19Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      671..676
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Polr2i"
                     /gene_synonym="2810002B19Rik"
                     /note="hexamer: AATAAA"
     polyA_site      690
                     /gene="Polr2i"
                     /gene_synonym="2810002B19Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcgcatcata gtcccagccc ttgtcctaga tccattccac tcggagttgg gaagcaggtt
       61 ccgaaatcgg gagtgagtag cagagggtat caaaggatcg acgcaagccg tcagccagac
      121 atccataaaa aaaaaaataa aaaaaataaa aaaataagga acccgcgcat gcgcgcagca
      181 tcgccctagt ttggtgcagc ttcggtgtgc gacccttccc gcgttccgta gcgcgcccgc
      241 gcaagcgcag aaggctcagc agcccagtcg ctatggaacc cgacgggacg tacgagcctg
      301 gcttcgtggg tattcggttc tgccaggaat gtaataacat gctgtacccc aaggaggaca
      361 aggaaaatcg cattctgctg tacgcgtgcc ggaattgcga ttaccagcag gaagccgaca
      421 acagctgcat ctacgtcaac aaaatcacgc acgaagtgga cgagctgacc cagatcatcg
      481 cagacgtgtc ccaggacccc acgttgcccc ggacggagga ccacccgtgc cagaagtgtg
      541 gccacaagga ggcagtgttc tttcagtcac acagtgcccg agctgaggac gccatgcgcc
      601 tgtactatgt ttgcactgcc ccacactgcg gccaccgctg gactgagtga tcgttccttc
      661 ttccacctgt aataaatgcc agtttctaca aaaaaaaaaa aaaaaaa
//
