LOCUS       NM_027231                579 bp    mRNA    linear   ROD 06-OCT-2024
DEFINITION  Mus musculus polymerase (RNA) II (DNA directed) polypeptide F
            (Polr2f), mRNA.
ACCESSION   NM_027231 XM_128110
VERSION     NM_027231.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Yoshimura,S., Shimada,R., Kikuchi,K., Kawagoe,S., Abe,H.,
            Iisaka,S., Fujimura,S., Yasunaga,K.I., Usuki,S., Tani,N., Ohba,T.,
            Kondoh,E., Saio,T., Araki,K. and Ishiguro,K.I.
  TITLE     Atypical heat shock transcription factor HSF5 is critical for male
            meiotic prophase under non-stress conditions
  JOURNAL   Nat Commun 15 (1), 3330 (2024)
   PUBMED   38684656
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Tscherner,A.K., McClatchie,T., Macaulay,A.D. and Baltz,J.M.
  TITLE     Relationship of quantitative reverse transcription polymerase chain
            reaction (RT-PCR) to RNA Sequencing (RNAseq) transcriptome
            identifies mouse preimplantation embryo reference genesdagger
  JOURNAL   Biol Reprod 109 (5), 601-617 (2023)
   PUBMED   37669129
REFERENCE   3  (bases 1 to 579)
  AUTHORS   Le Rolle,M., Massa,F., Siggers,P., Turchi,L., Loubat,A., Koo,B.K.,
            Clevers,H., Greenfield,A., Schedl,A., Chaboissier,M.C. and
            Chassot,A.A.
  TITLE     Arrest of WNT/beta-catenin signaling enables the transition from
            pluripotent to differentiated germ cells in mouse ovaries
  JOURNAL   Proc Natl Acad Sci U S A 118 (30) (2021)
   PUBMED   34301885
REFERENCE   4  (bases 1 to 579)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 579)
  AUTHORS   Wilde,J.J., Siegenthaler,J.A., Dent,S.Y. and Niswander,L.A.
  TITLE     Diencephalic Size Is Restricted by a Novel Interplay Between GCN5
            Acetyltransferase Activity and Retinoic Acid Signaling
  JOURNAL   J Neurosci 37 (10), 2565-2579 (2017)
   PUBMED   28154153
REFERENCE   6  (bases 1 to 579)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   7  (bases 1 to 579)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   8  (bases 1 to 579)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   9  (bases 1 to 579)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
REFERENCE   10 (bases 1 to 579)
  AUTHORS   Southard-Smith,E.M., Collins,J.E., Ellison,J.S., Smith,K.J.,
            Baxevanis,A.D., Touchman,J.W., Green,E.D., Dunham,I. and Pavan,W.J.
  TITLE     Comparative analyses of the Dominant megacolon-SOX10 genomic
            interval in mouse and human
  JOURNAL   Mamm Genome 10 (7), 744-749 (1999)
   PUBMED   10384052
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY067308.1, AK007913.1 and AV576955.1.
            
            On Dec 8, 2015 this sequence version replaced NM_027231.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK169434.1, BU847374.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-30                BY067308.1         1-30
            31-561              AK007913.1         4-534
            562-579             AV576955.1         491-508
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 37.7 cM"
     gene            1..579
                     /gene="Polr2f"
                     /gene_synonym="1810060D16Rik; RPB6"
                     /note="polymerase (RNA) II (DNA directed) polypeptide F"
                     /db_xref="GeneID:69833"
                     /db_xref="MGI:MGI:1349393"
     exon            1..110
                     /gene="Polr2f"
                     /gene_synonym="1810060D16Rik; RPB6"
                     /inference="alignment:Splign:2.1.0"
     CDS             91..474
                     /gene="Polr2f"
                     /gene_synonym="1810060D16Rik; RPB6"
                     /EC_number="2.7.7.6"
                     /note="DNA-directed RNA polymerase II subunit F; RNA
                     polymerases I, II, and III subunit ABC2; RNA Pol II"
                     /codon_start=1
                     /product="DNA-directed RNA polymerases I, II, and III
                     subunit RPABC2"
                     /protein_id="NP_081507.1"
                     /db_xref="CCDS:CCDS27634.1"
                     /db_xref="GeneID:69833"
                     /db_xref="MGI:MGI:1349393"
                     /translation="MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGER
                     PQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKI
                     PIIIRRYLPDGSYEDWGVDELIISD"
     exon            111..180
                     /gene="Polr2f"
                     /gene_synonym="1810060D16Rik; RPB6"
                     /inference="alignment:Splign:2.1.0"
     exon            181..311
                     /gene="Polr2f"
                     /gene_synonym="1810060D16Rik; RPB6"
                     /inference="alignment:Splign:2.1.0"
     exon            312..383
                     /gene="Polr2f"
                     /gene_synonym="1810060D16Rik; RPB6"
                     /inference="alignment:Splign:2.1.0"
     exon            384..569
                     /gene="Polr2f"
                     /gene_synonym="1810060D16Rik; RPB6"
                     /inference="alignment:Splign:2.1.0"
     regulatory      543..548
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Polr2f"
                     /gene_synonym="1810060D16Rik; RPB6"
                     /note="hexamer: AATAAA"
     polyA_site      562
                     /gene="Polr2f"
                     /gene_synonym="1810060D16Rik; RPB6"
                     /note="major polyA site"
ORIGIN      
        1 tgggtcacgg cgcaagcgca aactacgcgt ggtgcggcga ggggcaaagg cgcgcgttct
       61 ctgctctgcg ccccgggcgg agaaggcatc atgtcagaca acgaggacaa tttcgacggc
      121 gacgactttg atgacgttga ggaggacgaa ggacttgacg acttggaaaa tgctgaggag
      181 gagggccagg aaaatgtcga gattctccca tctggtgagc gaccacaggc caaccagaag
      241 cggatcacca ctccttacat gaccaagtat gagcgggccc gggtgctggg cacccgggct
      301 cttcagatcg cgatgtgtgc cccggtgatg gtggagctgg agggggagac agaccctttg
      361 ctcatcgcca tgaaggaact caaggcgcgg aagatcccca tcatcattcg ccggtacctg
      421 ccagacggca gctatgagga ctggggcgtg gacgagctta tcatcagcga ctgagccggg
      481 cgcgctcggc ctgcaccagc tctgctgggc accctctctg tgcccgtttt atatgtgtaa
      541 ataataaacc tcaccctttc caccccctca aaaaaaaaa
//
