LOCUS       NM_025554               1022 bp    mRNA    linear   ROD 02-APR-2024
DEFINITION  Mus musculus polymerase (RNA) II (DNA directed) polypeptide E
            (Polr2e), mRNA.
ACCESSION   NM_025554 XM_282920 XM_900333 XM_914488 XM_923255 XM_993991
            XM_994017
VERSION     NM_025554.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1022)
  AUTHORS   Shimizu,H., Kubo,A., Uchibe,K., Hashimoto,M., Yokoyama,S.,
            Takada,S., Mitsuoka,K. and Asahara,H.
  TITLE     The AERO system: a 3D-like approach for recording gene expression
            patterns in the whole mouse embryo
  JOURNAL   PLoS One 8 (10), e75754 (2013)
   PUBMED   24146773
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1022)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC045521.1.
            
            On or before Jan 29, 2007 this sequence version replaced
            XM_914488.2, XM_923255.2, XM_282920.4, XM_900333.2, XM_993991.1,
            XM_994017.1, NM_025554.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC045521.1, AK010567.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1022
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="FVB/N"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 39.72 cM"
     gene            1..1022
                     /gene="Polr2e"
                     /gene_synonym="2410021N14Rik; 25kDa; RPB5; XAP4"
                     /note="polymerase (RNA) II (DNA directed) polypeptide E"
                     /db_xref="GeneID:66420"
                     /db_xref="MGI:MGI:1913670"
     exon            1..77
                     /gene="Polr2e"
                     /gene_synonym="2410021N14Rik; 25kDa; RPB5; XAP4"
                     /inference="alignment:Splign:2.1.0"
     CDS             21..653
                     /gene="Polr2e"
                     /gene_synonym="2410021N14Rik; 25kDa; RPB5; XAP4"
                     /EC_number="2.7.7.6"
                     /note="DNA-directed RNA polymerase II subunit E; RNA
                     polymerases I, II, and III subunit ABC1; RPB5 homolog"
                     /codon_start=1
                     /product="DNA-directed RNA polymerases I, II, and III
                     subunit RPABC1"
                     /protein_id="NP_079830.2"
                     /db_xref="CCDS:CCDS35972.1"
                     /db_xref="GeneID:66420"
                     /db_xref="MGI:MGI:1913670"
                     /translation="MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQF
                     GDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRA
                     LIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELL
                     ARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLVQ"
     exon            78..252
                     /gene="Polr2e"
                     /gene_synonym="2410021N14Rik; 25kDa; RPB5; XAP4"
                     /inference="alignment:Splign:2.1.0"
     exon            253..449
                     /gene="Polr2e"
                     /gene_synonym="2410021N14Rik; 25kDa; RPB5; XAP4"
                     /inference="alignment:Splign:2.1.0"
     exon            450..508
                     /gene="Polr2e"
                     /gene_synonym="2410021N14Rik; 25kDa; RPB5; XAP4"
                     /inference="alignment:Splign:2.1.0"
     exon            509..587
                     /gene="Polr2e"
                     /gene_synonym="2410021N14Rik; 25kDa; RPB5; XAP4"
                     /inference="alignment:Splign:2.1.0"
     exon            588..659
                     /gene="Polr2e"
                     /gene_synonym="2410021N14Rik; 25kDa; RPB5; XAP4"
                     /inference="alignment:Splign:2.1.0"
     exon            660..1008
                     /gene="Polr2e"
                     /gene_synonym="2410021N14Rik; 25kDa; RPB5; XAP4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgtttgggaa gcgcgacagc atggacgacg aggaggagac ctaccggctg tggaagatcc
       61 gcaagacgat catgcagctg tgtcatgacc gtggctacct ggtgacccag gatgaactgg
      121 accagacact tgaggaattc aaggcgcagt ttggggacaa gcccagcgaa ggacggccaa
      181 ggcgcacaga cctcacggtg ctggtggccc acaacgatga ccccacagac cagatgtttg
      241 tgttcttccc agaggagccc aaggtgggca tcaagaccat caaggtatac tgccagcgca
      301 tgcaggagga aaacatcaca cgggcgctga ttgtggtgca gcagggcatg acgccctccg
      361 ccaagcagtc cctggtggac atggccccga agtatgtgct ggaacagttt ctacagcagg
      421 agctgctcat caatatcaca gagcacgagc tagtccctga gcacgtggtc atgacaaagg
      481 aggaggtgac tgaactgctg gctcgataca agcttcgtga gagccagcta cccagaatcc
      541 aggccgggga cccagtggca cggtactttg ggatcaagcg agggcaggtc gtgaagatca
      601 tccgccccag tgagacggct ggccgctaca tcacctaccg cctggtgcag tagccgcagg
      661 ggaaacctag tgctcagaga ctgaagcagg aggattgctg cacatctgtg gactccttct
      721 cggtgtgagt gtctccagga aaacaatgaa gaggaaccca cagctgcacc gcatgcaggg
      781 aaacccagag cccactgctc tgcacagcac cctgacagct gtgggccaca gcctgtgggt
      841 cataactgga ttgccttttg actgacgggt tccgtcctgg ccattgtcgc aggatgagtg
      901 actccagagc tgcagccaca cccccactcc ttactccagg gtcactgttc tgttcagagt
      961 tctccattct cgaaggactc tcctgagaat taaaggatac tttgataaaa aaaaaaaaaa
     1021 aa
//
