LOCUS       NM_001355422             702 bp    mRNA    linear   ROD 02-APR-2024
DEFINITION  Mus musculus RNA polymerase I subunit H (Polr1h), transcript
            variant 2, mRNA.
ACCESSION   NM_001355422 XM_006524792
VERSION     NM_001355422.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CR956641.9.
            
            On Sep 16, 2017 this sequence version replaced XM_006524792.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY706106.1, AK005976.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-148               CR956641.9         59474-59621
            149-296             CR956641.9         59703-59850
            297-397             CR956641.9         60067-60167
            398-507             CR956641.9         60324-60433
            508-702             CR956641.9         63447-63641
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 19.16 cM"
     gene            1..702
                     /gene="Polr1h"
                     /gene_synonym="1110014N07Rik; Rpa12; Znrd1"
                     /note="RNA polymerase I subunit H"
                     /db_xref="GeneID:66136"
                     /db_xref="MGI:MGI:1913386"
     exon            1..148
                     /gene="Polr1h"
                     /gene_synonym="1110014N07Rik; Rpa12; Znrd1"
                     /inference="alignment:Splign:2.1.0"
     exon            149..296
                     /gene="Polr1h"
                     /gene_synonym="1110014N07Rik; Rpa12; Znrd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             161..532
                     /gene="Polr1h"
                     /gene_synonym="1110014N07Rik; Rpa12; Znrd1"
                     /EC_number="2.7.7.6"
                     /note="nuclear RNA polymerase I small specific subunit;
                     zinc ribbon domain-containing protein 1; DNA-directed RNA
                     polymerase I subunit H; zinc ribbon domain containing 1"
                     /codon_start=1
                     /product="DNA-directed RNA polymerase I subunit RPA12"
                     /protein_id="NP_001342351.1"
                     /db_xref="CCDS:CCDS28730.1"
                     /db_xref="GeneID:66136"
                     /db_xref="MGI:MGI:1913386"
                     /translation="MELARPRSNFQSDLDFCPDCGSVLPLPGIQDTVICSRCGFSIDV
                     RDCEGKVVKTSVVFNKLGATIPLSVDEGPELQGPVIDRRCPRCGHEGMAYHTRQMRSA
                     DEGQTVFYTCINCKFQEKEDS"
     exon            297..397
                     /gene="Polr1h"
                     /gene_synonym="1110014N07Rik; Rpa12; Znrd1"
                     /inference="alignment:Splign:2.1.0"
     exon            398..507
                     /gene="Polr1h"
                     /gene_synonym="1110014N07Rik; Rpa12; Znrd1"
                     /inference="alignment:Splign:2.1.0"
     exon            508..702
                     /gene="Polr1h"
                     /gene_synonym="1110014N07Rik; Rpa12; Znrd1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggatcgggc gctctagccc gcgtctggga tcgggactct atcagttttc cgcctacgtc
       61 ggacctaatg aggttcccca gcagctgagg gtcctaccta gcactccaaa ctcttgctgt
      121 cagaggaccc agtgggaaga agactcagct ctcatccgcc atggagctgg cccgcccccg
      181 ctccaacttt caatcagact tggatttctg cccagattgt ggctcagtcc tgccgctgcc
      241 tggaattcag gacactgtca tatgttcgcg ttgtggcttc tccatcgatg tgcgagattg
      301 tgaagggaag gttgtgaaga cctcagtagt gttcaacaag ctgggggcta ccataccttt
      361 gtctgtggat gagggacctg aattacaggg accagtgatt gacaggcgct gccctcgatg
      421 tggtcacgag ggaatggcat atcacaccag acagatgcgc tcagctgatg aaggacagac
      481 ggtcttctat acctgtatca actgcaagtt tcaggaaaag gaagattctt gacccttttt
      541 tctggcaacc cagcaacaat cctttccttc tctcggaagt gaagatactc gtctttgatg
      601 cctccttggt cccctccggc taccatgctt tgttctcaga ataagatcgt cgacccagaa
      661 tactcctttc ccttttgaat ttactaaagt tatttttcta tg
//
