LOCUS       NM_172253               2324 bp    mRNA    linear   ROD 02-FEB-2024
DEFINITION  Mus musculus RNA polymerase I subunit F (Polr1f), mRNA.
ACCESSION   NM_172253
VERSION     NM_172253.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2324)
  AUTHORS   Tarantino,C., Paolella,G., Cozzuto,L., Minopoli,G., Pastore,L.,
            Parisi,S. and Russo,T.
  TITLE     miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic
            stem cells
  JOURNAL   FASEB J 24 (9), 3255-3263 (2010)
   PUBMED   20439489
REFERENCE   2  (bases 1 to 2324)
  AUTHORS   Kosan,C. and Kunz,J.
  TITLE     Identification and characterisation of the gene TWIST NEIGHBOR
            (TWISTNB) located in the microdeletion syndrome 7p21 region
  JOURNAL   Cytogenet Genome Res 97 (3-4), 167-170 (2002)
   PUBMED   12438708
REFERENCE   3  (bases 1 to 2324)
  AUTHORS   Douglas,K.R. and Camper,S.A.
  TITLE     Partial transcriptome of the developing pituitary gland
  JOURNAL   Genomics 70 (3), 335-346 (2000)
   PUBMED   11161784
REFERENCE   4  (bases 1 to 2324)
  AUTHORS   Ko,M.S., Threat,T.A., Wang,X., Horton,J.H., Cui,Y., Wang,X.,
            Pryor,E., Paris,J., Wells-Smith,J., Kitchen,J.R., Rowe,L.B.,
            Eppig,J., Satoh,T., Brant,L., Fujiwara,H., Yotsumoto,S. and
            Nakashima,H.
  TITLE     Genome-wide mapping of unselected transcripts from extraembryonic
            tissue of 7.5-day mouse embryos reveals enrichment in the t-complex
            and under-representation on the X chromosome
  JOURNAL   Hum Mol Genet 7 (12), 1967-1978 (1998)
   PUBMED   9811942
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK010829.1, AK016638.1 and AK160682.1.
            
            On Jan 28, 2006 this sequence version replaced NM_172253.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK016638.1, AK153090.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4                 AK010829.1         2-5
            5-1648              AK016638.1         2-1645
            1649-2324           AK160682.1         1641-2316
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 14.38 cM"
     gene            1..2324
                     /gene="Polr1f"
                     /gene_synonym="2410173G11; 2810024J17Rik; D16Wsu83e;
                     Twistnb"
                     /note="RNA polymerase I subunit F"
                     /db_xref="GeneID:28071"
                     /db_xref="MGI:MGI:106292"
     exon            1..285
                     /gene="Polr1f"
                     /gene_synonym="2410173G11; 2810024J17Rik; D16Wsu83e;
                     Twistnb"
                     /inference="alignment:Splign:2.1.0"
     CDS             32..1024
                     /gene="Polr1f"
                     /gene_synonym="2410173G11; 2810024J17Rik; D16Wsu83e;
                     Twistnb"
                     /note="twist basic helix-loop-helix transcription factor 1
                     neighbor; twist neighbor protein; DNA-directed RNA
                     polymerase I subunit F"
                     /codon_start=1
                     /product="DNA-directed RNA polymerase I subunit RPA43"
                     /protein_id="NP_758457.1"
                     /db_xref="CCDS:CCDS25877.1"
                     /db_xref="GeneID:28071"
                     /db_xref="MGI:MGI:106292"
                     /translation="MAAGSVESQRSQAASERPVAGQAGVLPCLELPSYAAACALVGSR
                     YSCLVAAPHRRHIALSPRYLSRKRTGIREQLDAELLRYSESLLGVPIAYDNIRVVGEL
                     GDIYDDQGHIHLNIEADFVIFCPEPGQTLMGTVNKVSSSHIGCLVHGCFNASIPKPEQ
                     MSYEEWQTLEIHVGDELEFDVFRLDSDSAGVFCIRGKLSTTSLQLKHSAVSEDVAETV
                     VEEVVEKTPKKKKKKKDKDTDTCGTVDSVTEVADVTDVTPQEETDIPCSDNVNDFFEE
                     EPKKKKKKKKRHQEDQDPIFQASDSSGYQSDHNKKKKKRKHSEEANFESPKKRQ"
     exon            286..427
                     /gene="Polr1f"
                     /gene_synonym="2410173G11; 2810024J17Rik; D16Wsu83e;
                     Twistnb"
                     /inference="alignment:Splign:2.1.0"
     exon            428..636
                     /gene="Polr1f"
                     /gene_synonym="2410173G11; 2810024J17Rik; D16Wsu83e;
                     Twistnb"
                     /inference="alignment:Splign:2.1.0"
     exon            637..2324
                     /gene="Polr1f"
                     /gene_synonym="2410173G11; 2810024J17Rik; D16Wsu83e;
                     Twistnb"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgcgcgccc cgaagcaccc agccaagcct catggctgcg ggatctgtgg agtctcagcg
       61 gtcccaggcg gcctccgaga ggcccgtggc gggtcaggcc ggggtcctgc cttgcctgga
      121 gttgccgagc tacgcggcgg cgtgcgcgct ggtgggcagc cgctattcgt gcttggtggc
      181 tgccccgcac cgcaggcaca tcgccctgtc gccccgctac ctgagcagga agcgcacggg
      241 catccgcgag cagctggacg ccgagctcct gcgctactcc gagagccttt taggtgtccc
      301 tattgcatat gataacatca gagttgtggg tgaactagga gatatttatg atgatcaagg
      361 acacattcat cttaacattg aagcagattt tgttattttc tgccctgagc ctgggcagac
      421 gttaatgggt acagttaata aagtatcgtc tagccatatt ggctgtctag tccatggatg
      481 ttttaacgcc tctatcccta agcctgagca gatgtcatat gaggagtggc aaacattgga
      541 gatacatgta ggcgatgaac tggaatttga tgtatttcgc ttagattcag attctgctgg
      601 agtgttctgc attcgaggaa aactgagtac caccagtttg caacttaagc actctgcagt
      661 ttctgaagat gtagcagaaa ctgtcgttga agaggttgtt gaaaaaactc caaagaagaa
      721 aaagaagaag aaagacaaag atacagacac atgtggaaca gttgatagtg ttacagaggt
      781 tgcagatgtt acagatgtca cgccacagga agaaacagac ataccatgta gtgataatgt
      841 gaatgacttc tttgaggaag agccaaagaa gaagaaaaag aagaagaaaa ggcaccagga
      901 agatcaggac cccattttcc aagccagtga ctccagtggc taccagagtg accataacaa
      961 gaaaaaaaag aaaagaaagc acagtgaaga ggctaacttt gagtcaccta agaagagaca
     1021 gtaatcgtct tttctattgt taacatattc agatacacga ggaatagatt ttttgagtgg
     1081 taggaaatgc ttatgggaca ttcacaaata aatacttgat tggtagggtt ttgtactaaa
     1141 atcatacatt gataaataca ttttggaaaa tgccagtatt aaagtattat tttattacag
     1201 ttcagtggaa aatgttaaca attgcattta ctcttgactc atattgttaa agctctacat
     1261 aaagttttag attctcagca tttgccaaag aactttataa tattttcatt ttttttctga
     1321 taataaattt tgtttttagc cagaacatct tttctaaaag cttaatacat ttaccaggtt
     1381 tagattttcc ttaaacagta tttctattta cttaacatgt atagctaaag aagattatct
     1441 agagctctta tataccctgt ggctatctgt tgaatgtatg atgggcagaa aactcattgt
     1501 tccctcccac agggggtatg tgcatgtgtt cttgaattct gagactgtta atttttactt
     1561 tgtgtttcag tagtcttcat gtcattatat atggatcatg agcaagatga agaaagggta
     1621 aatatggttc ttgctagttg aaaatctcta gttaaccttt taatgattag aggtagtcta
     1681 ctagacttgc tttgaggagg agctccacag tcattgcttt tattgataaa aatgtgtgat
     1741 gtgttatgcc taaccagaag gtggtaatga ggataagctg tttgaggctc ataatcagcc
     1801 catagccatg catttacagg tacttaatat ctgtaatata ttttattgag gccaaagcct
     1861 ataaagtcaa tcaagatagt atagttcctt cctccatgag gcaacatggg agaaacactt
     1921 gtgtgcacac agcctaagtg aggaaataaa acagtatttg tagtaaatac tgtgaagaaa
     1981 acattgacta ctctttagtt agtatctgga aatgtacagg gttagggttg gccttcccgt
     2041 gtcagtcact gctgttgtca ctgactagca gacatagtgt ggtcgtcagc ttaatgtttc
     2101 ataaggagta aattctggca accatgtttc ttgacttcat ctacggtata tagagcataa
     2161 ggaatgacag caatttaata tgtacaggta gataaataac cagcatcttt aactcaggat
     2221 acttgacatt ttttggtggc tttcaggtct cttcttaaac tgtgactatt ctaaattgac
     2281 atgtgttgtc tgtcagtaca aaatatgaga ttttaaatta aaga
//
