LOCUS       XM_006501363            6391 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus pogo transposable element with ZNF domain
            (Pogz), transcript variant X3, mRNA.
ACCESSION   XM_006501363
VERSION     XM_006501363.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006501363.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6391
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..6391
                     /gene="Pogz"
                     /gene_synonym="9530006B08Rik"
                     /note="pogo transposable element with ZNF domain; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 mRNAs, 38 ESTs, 1004 long SRA reads, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 44 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:229584"
                     /db_xref="MGI:MGI:2442117"
     CDS             354..4397
                     /gene="Pogz"
                     /gene_synonym="9530006B08Rik"
                     /codon_start=1
                     /product="pogo transposable element with ZNF domain
                     isoform X3"
                     /protein_id="XP_006501426.1"
                     /db_xref="GeneID:229584"
                     /db_xref="MGI:MGI:2442117"
                     /translation="MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTTSAGN
                     TLVQQGGQPLILTQNPAPGLGTMVTQPVLRPVQVMQNANHVTSSPVASQPIFITTQGF
                     PVRNVRPVQNAMNQVGIVLNVQQGQTVRPITLVPAPGTQFVKPTVGVPQVFSQMTPVR
                     PGSTMPVRPTTNTFTTVIPATLTIRSTVPQSQSQQTKSTPSTSTTPTATQPTSLGQLA
                     GQPPGQSNQTSNPKLVSIASFVTVKRPGVTGENSNEVAKLVNTLNTVPSLGQSPGPVV
                     VSNNSSAQRTSGPESSVKVTSSIPVFDLQDGGRKICPRCNAQFRVTEALRGHMCYCCP
                     EMVEYQKKGKSLDAEPSVPSAAKPSSPEKTAPVTSTPSSTPIPALSPPTKVPEPNENA
                     GDAVQTKLIMLVDDFYYGRDGGKAAQLTSFPKVATSFRCPHCTKRLKNNIRFMNHMKH
                     HVELDQQNGEVDGHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAFESEP
                     LFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDVHFRMIHEDTRHLLCPYCLKVFKNG
                     NAFQQHYMRHQKRNVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPGTKVT
                     IRASRGQPRTVPVSSNDAPSGTLQEAAALTSTDPLPVFLYPPVQRNIQKRAVRKMSVM
                     GRQTCLECSFEIPDFPNHFPTYVHCSLCRYSTCCSRAYANHMINNHVPRKSPKYLALF
                     KNSVSGIKLACTSCTFATSVGDAMAKHLVFNPSHRSSNILPRGLSWMSHLRPGQASER
                     VFDWSMKNTYLPPPLVPNKAATVKPVGVTPAEPQELAGPVLQALPSPASTATPPATPT
                     HPQPSALPPSATEGTECLNVSEQEEGSPVTQDPEPASGGGGGSGVGKKEQLSVKKLRV
                     VLFALCCNTEQAAEHFRNPQRRIRRWLRRFQASQGENLEGKYLSFEAEEKLAEWVLIQ
                     REQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHHLTPHARRAVAHTLPKH
                     VAENAGLFIEFVQRQIHNQDLPLSMIVAIDEISLFLDTEVLSSDDRKENALQTVGTGE
                     PWCDVVLAILADGTVLPTLVFFRGQANRFANVPDSILLEAKDSGYSDDEIMELWSTRV
                     WKKHTACQHSKSMLVMDCHRTHLSEEVLALLSASSTLPAVVPAGCSSKIQPLDVCIKR
                     TVKNFLHKKWKEQAREMADAACDSDVLLQLVLVWLGEVLGVIGDSPELVQRSFLVASV
                     LPGPDGNVNSPTRNADMQEELIASLEEQLKLNGEQSEEHSASAPRPRSSPEETVEPES
                     LHQLFEGESETESFYGFEEADLDLMEI"
ORIGIN      
        1 tgacgagagg tatccctccg cggggcgaga gggtcggtgg ggggagtcgg cgtttctctc
       61 ccccgcgcca gctcccatac acggagccac attccttggc ccccccaccc cctccctcgg
      121 ggccccccgc ccccctcggg aaaaaaatcc accccaatca ctcgaacccg agggaggctt
      181 cctttcaccc tcggggagag gagctttcaa cggttccctc ttccccgtct cccccccgaa
      241 ccccggtccc ctcccctgct cccaccccct actcccggcg ccgggtgcaa ggtcccttta
      301 aggcgacggc accttcctcg ggtcagacta ccggcggcga cgaccacggg agcatggcgg
      361 acaccgacct gtttatggaa tgtgaggagg aggaactgga gccatggcag aaaatcagtg
      421 atgtcattga ggactctgta gttgaagatt acaattctgt ggataaaact acttccgctg
      481 gtaatacttt ggtccagcaa ggtggacagc cactcatcct cacccaaaac ccagcaccag
      541 gtctgggaac aatggttact caaccagtat tgagacctgt ccaggtcatg cagaatgcca
      601 atcatgtgac tagctcccct gtggcctcac aacctatctt catcactacc cagggatttc
      661 ctgtaaggaa tgttcggcct gtacaaaatg caatgaatca ggttgggatt gtgctgaacg
      721 tacagcaagg ccaaacagtt agaccaatta cattggtccc agccccaggt acacagtttg
      781 ttaagccgac agttggcgtc ccacaagtgt tctctcagat gacccccgtg aggccaggct
      841 ccacaatgcc tgtgaggccc accaccaaca cctttaccac cgtcatccca gctactctca
      901 ccatccgaag cactgtccca cagtcccagt cccagcagac caagtccacc cccagtacct
      961 ccactactcc cactgccaca caaccaacct cactggggca gctagctggt cagcctccag
     1021 gccagtccaa ccagacctcg aatcccaaac tagtgagcat tgccagcttt gtcactgtga
     1081 agcgacctgg ggttacaggt gaaaatagca acgaagtggc caaattggtg aatactctta
     1141 acactgtccc ttccctgggc cagagtcctg ggcccgtggt ggtgtccaac aacagttctg
     1201 ctcaaagaac cagtgggccc gaatcttcag tgaaagtgac ctcttccatc ccagtgtttg
     1261 acctccagga cggtggacgg aaaatatgtc cacggtgtaa tgcccagttc cgtgttactg
     1321 aagctctgag aggtcacatg tgttactgct gccctgaaat ggttgagtac caaaagaaag
     1381 gcaagtccct cgatgcagag cccagtgtcc catcggcagc aaagccctcg tcccctgaga
     1441 agacagcccc tgttacttcc acaccctcct ctacaccaat tcctgctctc tcaccaccta
     1501 ccaaagtacc agagccaaat gagaatgctg gagatgctgt ccagaccaag cttattatgc
     1561 tggttgatga tttctactat ggacgggatg ggggcaaagc agcccagctc acgagcttcc
     1621 ctaaggttgc cacgtctttc cgatgccctc attgtactaa gaggctaaag aacaacattc
     1681 gattcatgaa ccacatgaag caccacgtag aacttgatca acagaatggt gaggtggatg
     1741 gtcacaccat ctgccagcac tgttaccgcc agttctccac ccctttccag ctccagtgcc
     1801 acttggaaaa tgttcatagt ccctatgaat ctactaccaa gtgcaagatc tgtgagtggg
     1861 cctttgaaag cgagcccttg ttcctccagc atatgaagga cacccacaag cctggagaga
     1921 tgccttatgt ttgtcaggtg tgtcagtatc gctcctccct ctactctgaa gtagatgtcc
     1981 attttcggat gatccatgaa gatactcggc atttgctttg cccgtattgc ctaaaagtct
     2041 tcaaaaatgg caatgccttc cagcaacact acatgaggca ccagaagaga aatgtttatc
     2101 actgcaacaa atgccggctg cagtttctct ttgccaagga caaaattgaa cacaagctgc
     2161 agcaccataa aaccttccgt aagcctaagc aactggaagg cttgaaacca ggcaccaagg
     2221 tgacaatccg ggcttcccgg gggcagccga gaactgttcc tgtgtcttca aatgatgcac
     2281 cttctggcac cttgcaggag gcagcagcgc tgacctccac tgacccccta cctgtcttcc
     2341 tttatccccc tgtccagcgc aatatccaga agagagctgt taggaaaatg agcgtcatgg
     2401 gccggcagac atgtctggag tgcagctttg agattccaga ttttcctaat catttcccta
     2461 cctatgtgca ttgttctctc tgccgataca gcacctgctg ctctagagct tatgccaatc
     2521 acatgatcaa caatcatgtt ccacggaaaa gtcccaagta tttggctttg tttaaaaatt
     2581 ctgtaagtgg aatcaagctg gcctgcactt cgtgtacctt tgctacctcc gtgggagatg
     2641 cgatggccaa gcatttagtg ttcaacccct cccacagatc tagcaacatc ttaccacggg
     2701 ggctcagttg gatgtctcac ttgaggcctg gccaggcttc tgaacgagtg ttcgactgga
     2761 gcatgaagaa tacatatctt ccacctcccc tcgtccctaa caaagctgcc actgtgaagc
     2821 ctgtaggagt caccccagcg gagccccaag agctggcagg tcctgtgctc caggcacttc
     2881 catccccagc ctcaactgca accccaccag caacccccac tcacccacag ccctccgccc
     2941 tgccaccctc ggccacagag gggactgagt gtctgaatgt cagtgaacag gaagaaggaa
     3001 gccctgtcac ccaggatcct gagccagcat caggtggtgg aggtggcagt ggggttggca
     3061 agaaagagca gctgtctgtg aagaagcttc gggtagtact gtttgccctg tgctgcaaca
     3121 ctgaacaggc ggctgaacac tttcgaaacc cccagcggcg aatccgtcgt tggcttcgac
     3181 gcttccaggc ctctcaggga gagaacttag agggcaaata tctcagcttt gaggcagaag
     3241 aaaaactggc tgaatgggtg ctgatccaga gagagcagca gctccctgta aatgaggaga
     3301 ccttgtttca gaaggccacc aaaattggac gctctttgga aggggggttt aagatctcct
     3361 atgagtgggc tgtgcgcttc atgcttcggc accacctcac tccccatgcc cggcgagctg
     3421 tcgcccacac gttaccgaag catgtagcag aaaatgctgg actcttcatt gagtttgtgc
     3481 agcggcagat tcacaatcag gacttacctt tgtctatgat tgtggctatt gatgagatct
     3541 ctttgttcct ggacacagag gtgctgagca gtgatgaccg aaaggagaac gctctgcaga
     3601 cagtgggcac aggggagcct tggtgtgacg tcgtgctggc tatcctagca gatggcactg
     3661 tcctccccac ccttgttttc ttccgaggac aagcgaatcg gttcgctaat gtgccagact
     3721 ctatattact agaggccaaa gacagtggct acagcgacga cgaaatcatg gagctttggt
     3781 caacccgtgt atggaagaag cacacagctt gtcagcacag caaaagcatg ttggtgatgg
     3841 actgtcatcg cactcacttg tcagaagaag tactggccct gctcagtgcc tctagcactt
     3901 tgcctgcggt agtccccgcc ggttgtagct ccaaaatcca gccactagat gtatgcatca
     3961 aacgaactgt taagaacttc ctgcacaaaa agtggaagga acaggctcgg gaaatggctg
     4021 acgctgcttg tgattctgat gtcttgcttc agctggtgtt ggtctggctg ggagaggtgc
     4081 tgggtgtcat tggggactcc ccagagctag ttcagcggtc cttccttgtg gctagtgttc
     4141 tgccaggtcc cgatggcaac gttaactcac ccacacgcaa cgctgacatg caggaggagc
     4201 tcattgcctc cctagaggag cagctcaagc taaatggaga acagtctgag gagcactcag
     4261 cttctgcccc ccgacccagg tcatctcctg aagagacagt cgagcctgaa agccttcacc
     4321 agctttttga gggggaaagt gagacggagt ctttctatgg ctttgaggaa gctgaccttg
     4381 atctgatgga gatctaggtg ctgaggctat ggaagctatg gagtcaggaa ggaaggtgag
     4441 ggaggttaga ggggcttaga caagatgggt accagtgggg tacttggttt atagtttcaa
     4501 ttttatgcca ccactcccag cattgactct tcctgtgaat ttgtgggtta ttaggaacgc
     4561 cggtagtgat cagttctgag ccgaggagct ggcccattgg ttactcctaa aaacatgttt
     4621 ttgtgaccct ttttttcttc tttaatttaa atcactgtgt ttgctatttt tctgacaaaa
     4681 tctaggaaaa caatcctttg tggacagata ttaagttgtt tcatttcccc gtttacctca
     4741 attgtatcat agtatttctg ggttttgttt gttttactgt gtggccaatg tctttgggca
     4801 tgatactatc taatcattgt taacatgaga actttgctgc agatggaaag aaagaatatg
     4861 tagctgacaa actgactatt acatatgtgg ataagttttt ttcattgtgg tcttaacact
     4921 tttatataaa aatgaaaatg aaaaatgaat cccactgaac tctttccttc tgctccttcc
     4981 ctccctcccc agaggtgctg gcttcttcag cagctctaga tataaagttg tgctttaaaa
     5041 cgtgcatgaa ccaccttgaa acatctagaa tggatagatt tttctgtcct caccaccctc
     5101 caccaaaata taacagaaac aatatttttt tgcacttgta acccttgacc cctttcctga
     5161 tttttcacat catccttcac tctggacaaa ggagcacatg tgtccctggc aagcagaggt
     5221 actgagtgag gtgatgagtg tttcaggtgg aagccattcc tagtctctgt cttcaacaag
     5281 cccgatggcg tagtcccttt cctctagaac tttgtcctgt taagctcgct gacggcacac
     5341 ctgctcatca caggtttaac tggcatgtta agtgttgaac tagaaagaca gactgcttca
     5401 actcctgctt acacgtggct ttcctgttcc tctcatattc agagaaacgg atgtgaaaag
     5461 catagaggtg tgcacagaga aagacatgaa tctttatttt tcactgccaa cttcaaggaa
     5521 aaatttttct acagtttgca tgagggattt ttttaagaaa atatgtactc atggtgataa
     5581 accaaaatgt actgtaccat agaggagagc aaaccttccc cacagccaca ccgtccttat
     5641 ccatcccgag gcgttcagag tttcctcctg tgagccaagg aggcagcctg cacaagcgtg
     5701 taagtggttc atctctaaag tgtacataag tggagcattt aataaaacaa gaggaaatgg
     5761 atttataaac tttttctatg tgtccccatt gaataggctt tcatagactg ggagatactc
     5821 aagacatgcc cgcctggtgg cacaggggtg gcgtctgtga ccaccagtgc tttccctgca
     5881 gattttgttt tgtcttttta actcccagca cactataaca tagtgaacag gactgatccc
     5941 agaagtttgg cctgctctaa aaccatggca ttggagatct gaactgagga gccacctggg
     6001 ctggtcccca gctttttgcg aaatgccatt ttattggtga cggactacac ttcaaagcca
     6061 accttctgcc tttgagaaag ctggagaact gtaaatggtc acttcaatct acagcctaat
     6121 cctctttggt cgtctctgca gcagccacag ccttagcaga gctgggttcc tggcctctgc
     6181 acattgactt tggatgggtc atttttggtt gttttttgtt ttttgttttt tttctttttt
     6241 ttaaagatca tggtaaccgt gaatcagctg ggttttggca agcaagttgt ctttgtggac
     6301 tctgcctgca tggcttagta gtagaaggaa gtttttttgg ttttgttttt ttataattca
     6361 gtttaatcaa taaacatgta tttattgaca a
//
