LOCUS       NM_001142948            7043 bp    mRNA    linear   ROD 31-DEC-2022
DEFINITION  Mus musculus pogo transposable element with KRAB domain (Pogk),
            transcript variant 2, mRNA.
ACCESSION   NM_001142948
VERSION     NM_001142948.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 7043)
  AUTHORS   Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S,
            Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N,
            Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y,
            Okado H, Hashimoto M and Asahara H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   2  (bases 1 to 7043)
  AUTHORS   Okazaki N, Kikuno R, Ohara R, Inamoto S, Aizawa H, Yuasa S,
            Nakajima D, Nagase T, Ohara O and Koga H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC161807.12.
            
            [WARNING] On Aug 3, 2023 this sequence was replaced by
            NM_001142948.3.
            
            On Apr 20, 2022 this sequence version replaced NM_001142948.1.
            
            Transcript Variant: This variant (2) lacks an alternate exon in the
            5' end. The resulting isoform (2) has a longer and distinct
            N-terminus, compared to isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR10223971.1182.1,
                                           SRR10223970.1287.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-127               AC161807.12        73978-74104
            128-261             AC161807.12        75279-75412
            262-388             AC161807.12        80187-80313
            389-487             AC161807.12        81847-81945
            488-7043            AC161807.12        83646-90201
FEATURES             Location/Qualifiers
     source          1..7043
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1"
     gene            1..7043
                     /gene="Pogk"
                     /gene_synonym="9130401E23Rik; BASS2; mKIAA1513"
                     /note="pogo transposable element with KRAB domain"
                     /db_xref="GeneID:71592"
                     /db_xref="MGI:MGI:1918842"
     exon            1..127
                     /gene="Pogk"
                     /gene_synonym="9130401E23Rik; BASS2; mKIAA1513"
                     /inference="alignment:Splign:2.1.0"
     CDS             73..1953
                     /gene="Pogk"
                     /gene_synonym="9130401E23Rik; BASS2; mKIAA1513"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="pogo transposable element with KRAB domain
                     isoform 2"
                     /protein_id="NP_001136420.1"
                     /db_xref="CCDS:CCDS48432.1"
                     /db_xref="GeneID:71592"
                     /db_xref="MGI:MGI:1918842"
                     /translation="MPGHSLRRPLRRRRPLGREMESRAYPLNLTLKEEQKEEEVEIQE
                     LEDGPIDMQKVQICSEGAWVPALFDEVAIYFSDEEWEVLTEQQKALYREVMRMNYETV
                     LSLEFPFPKPDMINRLERDEECPNSDEWRLQGVTFAENEESDFRTPDWASPTNATSHF
                     PQPQPFNSFGLRLPQDITELPEWTEGYPFYMAMGFPGYDLSADDLASKFQFSRGMRRS
                     YDAGFKLMVVEYAESTNNCQAAKQFGVLEKNVRDWRKVKPQLQNAHAMRRAFRGPKNG
                     RFALVDQRVAEYVRYMQAKGDPITREAMQLKALEIAQEMNIPEKGFKASLGWCRRMMR
                     RYDLSLRHKVPVPQHLAEDLTEKLVTYQQSVLALRRTHDYEVAQMGNADETPICLEVP
                     SRVTVDNQGEKPILVKTPGREKLRITAMLGVLADGRKLPPYIILRGTYIPPGKFPSGM
                     EIRCHRYGWMTEDLMQDWLEVVWRRRTGAVPRQRGMLILNGFRCHATDSVKSSMENMN
                     TDMVIIPGGLTSQLQVLDVVVYKPLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLF
                     LEWIMVAWNSISSESIVQGFRKCHISSNLEDEGDVLWEIEGELPKEPPKECGPESVAE
                     GD"
     exon            128..261
                     /gene="Pogk"
                     /gene_synonym="9130401E23Rik; BASS2; mKIAA1513"
                     /inference="alignment:Splign:2.1.0"
     exon            262..388
                     /gene="Pogk"
                     /gene_synonym="9130401E23Rik; BASS2; mKIAA1513"
                     /inference="alignment:Splign:2.1.0"
     exon            389..487
                     /gene="Pogk"
                     /gene_synonym="9130401E23Rik; BASS2; mKIAA1513"
                     /inference="alignment:Splign:2.1.0"
     exon            488..7043
                     /gene="Pogk"
                     /gene_synonym="9130401E23Rik; BASS2; mKIAA1513"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accacgtgtc ctcgctccct cccgaggggc cgcgctgggg cggcgggagc ggtggagacg
       61 atggcgcggt gaatgccggg ccacagcctt cgtcgccctt tgcggcgacg ccgcccgctc
      121 ggccgggaaa tggagtcccg ggcctaccct ctgaatttga ccctgaaaga agagcaaaag
      181 gaggaagagg ttgagatcca agagttggag gatggcccca tagatatgca gaaagtacaa
      241 atctgctcag aaggcgcatg ggtaccagct ctatttgatg aggtggccat atatttctca
      301 gatgaggagt gggaagttct gacagagcaa caaaaagccc tctaccggga agtcatgagg
      361 atgaattatg agactgtcct gtccctggaa ttcccattcc ccaagccaga tatgatcaat
      421 cggttggaaa gggacgagga gtgtcctaat tctgatgagt ggcggctcca gggagtaacc
      481 tttgcagaaa atgaagaatc tgactttagg actccagatt gggcaagccc gacgaatgcc
      541 acctcccatt ttcctcaacc tcagcccttc aacagctttg gcctgcgtct gcctcaggac
      601 atcactgaac tgcctgagtg gactgagggc taccccttct atatggccat gggcttcccc
      661 gggtatgacc tctcagctga cgacttggcg agcaagtttc agttcagtcg tggcatgcgc
      721 cgcagttatg atgcagggtt caagctgatg gtggtggagt acgccgagag caccaacaac
      781 tgtcaggctg ccaagcagtt tggggtgttg gaaaaaaatg ttcgagactg gcgcaaagtg
      841 aagccacagc tccaaaatgc tcatgccatg cggcgggcat tccgaggccc caagaatgga
      901 aggtttgctc tggtagacca gcgagtggct gagtatgtca gatacatgca ggccaaaggg
      961 gaccctatca ctagggaggc aatgcagttg aaagctcttg aaatcgccca ggaaatgaac
     1021 attccagaga aagggttcaa ggcaagtctg ggctggtgtc gaagaatgat gagaaggtat
     1081 gacctgtctc tgaggcataa agtgccagtc cctcaacacc tggccgagga cctgactgaa
     1141 aagcttgtca cttaccagca gagtgtgctg gctctgcgca ggacacacga ctatgaagtg
     1201 gcccagatgg gcaatgcaga cgagacgccc atctgcttag aagtcccctc tagagtgact
     1261 gttgacaacc agggcgaaaa gcccatcttg gtcaagacac caggcaggga gaaattgagg
     1321 atcacagcca tgctgggggt cttggctgat gggaggaagt taccaccgta catcattttg
     1381 aggggaacat acatcccccc tgggaagttt cccagtggca tggagatccg ctgccaccgc
     1441 tacggatgga tgactgagga cttgatgcaa gactggttgg aagttgtgtg gagacggaga
     1501 actggagctg tgcccagaca gcgagggatg ctgatcctga atggcttccg gtgccatgcc
     1561 actgactctg tgaagagttc catggagaac atgaacacgg acatggtgat catcccaggg
     1621 ggcctgacct cccagctgca ggtgctggat gtcgttgtct acaagcctct gaacgacagc
     1681 gttcgggccc agtattccaa ctggcttctg gctgggaacc tggcactcag ccccactgga
     1741 aatgctaaga agccccccct gggcctcttc ctggagtgga tcatggttgc atggaacagc
     1801 atctcaagtg aatcaattgt ccaggggttc agaaagtgcc acatctccag caacttagag
     1861 gacgaaggtg acgtcctctg ggaaatcgag ggcgagttgc ccaaagaacc gccaaaagaa
     1921 tgtggtcctg aaagtgtggc tgagggtgac tgagaggact caggtaaact ggtcagtcaa
     1981 agatcctgca ccatcactgg tgccctgctc atggctagca cttaccgttt ttctggccct
     2041 gagtttgttc ttttcacgtt ctcttgaaat aagcctgccg tgccacagtg tagacggcag
     2101 gcaggtcatc agcactttct ccatcagaaa cagatttgta ttgtgtttta tggcctggat
     2161 ccaggagtac ttttataatg ggtaagatga acaaggagct gtctgtcaga acacctcaca
     2221 tgagagcagt cccactgcca agtttcttag gcctctagaa catagttcga cattgtttag
     2281 ttcacaaaaa ggttgaagag acaactttct tctaaaatgc tgaacttcag ggcagggctg
     2341 tctgctcaca ttacttaaca tagttgcact gccttttgct gatctgcagg accctggccc
     2401 agggagagaa tgaagtcagc ctttagtatg gtaacctcta ggcctcatct ctgtgtccta
     2461 gggagattat tacctccatg cccaccaggg agatgataat atgtattgtt tgttttgtct
     2521 agggaatatt gagagtttaa aatcttggtc tcatagaaat tcagttatgg ggtgagacgt
     2581 tacagtcaat tcctgttgcc agcaggtatc tgaaggaaga tgtctttaaa ttggaacttt
     2641 gaagggctgc agagctggct tagcagttaa gagcatgcta ttcttgcagt ttggttccca
     2701 gcacccacat cctgcagctt gacacctgta gctccggttt caggagtcca atgacctctt
     2761 agcctccttt gacatctgca gttacatgca cagttacaca cacacacaca cacacacaca
     2821 cacacacaca cacgtgtgtg tgactaaaag aagccttggg ctagagagat ggctcagcag
     2881 ttaggagtgc ttacctttca tccttgcaga ggactggcat ttagtttcca gcacctgtat
     2941 aacagctcac aaccagctgt acctccagtt ccagggcatc ttatgacctc ttctggcctc
     3001 tgccaggtcc tgcatacata tgatgcaggc tcacacatat acacataaaa ttaaatcttt
     3061 cttatgaaat gaatctgcac cagaaatagt acaatgaata cagttcgcga gcctaaggtc
     3121 atcaagtgta catgtaggga gttgaggagg tgtgcagaag aagagcaact ttggaaaaaa
     3181 gcaggcgatc agagcccaca ctagcaaagg cccagagccc ctaaacacaa actttgagca
     3241 aacaggagaa ggaccagagt aaggggcaca tggaaggcaa acagcaggaa aatggtcagt
     3301 tctttaatag aaaacctaaa attaacatag ctttccttta taaaagaaaa agtcaattag
     3361 tgtacatttt acttgtcccc ctaagcccac cgtgcaagtg aaatgctagt agaaatcccc
     3421 atgcccctga gctgtgtaag cgcaggctcc tcggtggcgt gcaccacctt cctgtctgag
     3481 ccctaggctt cggggatagt tctccacatg cccctactct ctgtaaagcc ttggattcag
     3541 gctccctttc tgctgaccac tccgctgccc ctgttggata gcagactttg agttggagtt
     3601 gttttatcct ttcacattct tgcttttcat ttttcaccta agttagaaaa catttcaatt
     3661 tcctaagcaa tttaccactc caggaaccca gtcaaaaact gccagaaaag gaaaaagcag
     3721 aaaaccatgc taagccacag ctgtgcacat gggtacatgc cacgtctgct cttccagttg
     3781 ttaggatctt tgtacagctt ctgggggaag tgatggagac agacatgaac aagattcgga
     3841 agacacaggc attaaaccac ctcctgttac agaatagtat actgctttgt taaagacatc
     3901 cagactgatt cctactcagg ttctctctgt tttccagaaa atggaactgt gatggaaaca
     3961 gttgggagga aaacttgtaa gaggatggct gcagagggac caaaatgggc aatgaggctc
     4021 tctgagaatc ctaggggtgg acagcatgaa taccttatca gacagtccca tctaccacgt
     4081 cctgtcagtg tccgccaagt ctaggaccct tatggtcagt gacaagaaaa ggaacttggt
     4141 ggcctgcttc ttccttcgga gctgtctcca tctgcccaga tagaagccta taaacccaat
     4201 cgagcaaagg tgttttctgg agaacacgtt ctcacaccga gtgtgagtga gtgtgtgtgt
     4261 accttcacag gtgcttcagt aggagctgtt tccacacagg ccgagactac aggaaagctt
     4321 ttgtaaaggc gtgtcacacg tgtactcctg ctacttccat gtctcctcac tgagggaatg
     4381 agatgttaat aaccaagtgg gacacaggct tggtgcagaa gatggatttt ctgtaggtaa
     4441 actaggttag gatgcaagat aaagactaag ataaatgatg ttgcagatac ctttccaatc
     4501 tggcagctag acctttctag ggtcttattt aatgagccaa ttttttctgt tgtcctctat
     4561 gaggcagccc ttggtgcaca agcctttgct tttcaggctg cctgcagaag actaagttct
     4621 ctcccgtcta cacagaacag ggcccactga cttggttaat ttctttaata tttttgtcaa
     4681 aagggcaatg ggagggtttg ggccgtaagc cacagctgct gttagactcc aaccatacaa
     4741 gagtaggtat gagtcactga caacttctac agtagtaatt tgcattccca tgtaagtcag
     4801 cagctaagaa aaacattcct tcaaagctat atgttgtaca aaaattctac cagaacctca
     4861 taggcaaagc cattgctagc tctgtcattc cgaatactca gtctagccac caggttgctg
     4921 tgatcacagt tccttcctct actcggctcc tgtggattct caacgctgtt ctcagcatct
     4981 tccccagttt ctactcaggt tctcctgctc ctgtttgtcc ttcacatttc tcgctgtgta
     5041 accagtcata aacctgcgca gtctgtcaga gttccacaca catgaccgtg atttctcact
     5101 gtgtaaccag tcataaacct gcgcagtctg tcagagttcc acacacatga ccgtgactcc
     5161 tgagaactct gtgtactgac actgttcctc ttagctttct ctgtaccgtc tcgtcatccc
     5221 cgagtgccat ctaattaaac cctgttcctc tccacgttct catcaggttt ggggtttgtt
     5281 ttcttccttt ggctgtccta tttccagact cttatttttc ttgcttgaga gcttaaaaaa
     5341 tattatgttt aggtttccac acaaaagaca gttatcttaa gagtagaaaa taagccgggc
     5401 agtggtggcg cacgccttta atcccagcac ttgggagaca tatctctgag ttcgaggaca
     5461 gccagggcta cacagagaaa ccctgtctcg gaaaaaaaag aaaaaaaata gagtagaaaa
     5521 tgggtttaac ccttttcatc ccataccatc actatcagct aagatgcctt acaggctatg
     5581 tagcactgga actttctaga gtaatggttc tgctgtccgg gtcttctggg cacattcttc
     5641 caccgactta agatgatcta tgcctaacag agccccagta caactattga gcagaatagc
     5701 tgtttcctga gaattaccat agctcactgg gactggcact ccctagatag aaactgatcc
     5761 cagtaataaa ctttgataac aaagacaata ggctctggtg attttattta ttgctggtgt
     5821 tatccaaagt ttaaaagcta ttgcctctgc atcacaccgt tgaagcagtc tcctggcatg
     5881 tactctaagt ggtgcaagca tttgtttaaa agaaggaaat gtggggtttt aaactagctc
     5941 ttaaaagttg gagaggttta gataggtttc ttctgtaagt catgtcttag cagtgttaca
     6001 gtcaggatga aatacagatg attcaatgtg ccaagttgta attttcataa atttctcaag
     6061 tgaaagcata ttcacaggcc tctactgtgt gcacaggaga agtattggat tgacttgctc
     6121 acagtggggg aaacaaagta ctagagggct acagtgaatg actaaggtat gtgcctggta
     6181 aaggcagacc gttggtgtgt agtcacctgt ggccaaacac gctactaaaa acttacagtc
     6241 aaaattaact tgagagtaac taattacact gtttctaaca gcttgcttca agtacttatg
     6301 tgatttttga caatatgtat ttattatttc ctaattgtag gagattgcac atagactcat
     6361 gactagatga ggtaacagaa atggagccag cctttggtgg aaaacaaaaa attgaaatcc
     6421 ttttcaggaa ctcttaaata tcttaattct tattatgtcc ctgccttacc tccaacccca
     6481 tctgcccact tcagaaaatc acttgacaac tggcatggaa gacagacccg agtgtaaacc
     6541 taaaacagga tagatctgga gccttgtggt ctggtctcac tggagagggc actaagtata
     6601 gaccggggcc tagcacagtg aacagcttcg aacttagagc atgctctgct acaccttttg
     6661 gaattctcca ttgctggggg cagccaagac cagttgccac tcctaactgc ctctctgaat
     6721 tcaggagagt atacaacata cccacatcct gggcagcaag gggttcttta tacagcagca
     6781 gtgtgtatcc atcactccaa atccttttaa cctctaaatg ttcttagtgt cacccacctg
     6841 acaccctaaa aggtttgcta ttaacttgtt tgttttaacc ttaggctaca gaccactaaa
     6901 tgagtacctt aacaagaacc tgcctttggc acattctttt gaagtttgag ctaagatctc
     6961 atatggctgg acttctgttt ctatggaaga gaatattcct tatctgctta tttgaataaa
     7021 caggaaaagg gtttctccca aaa
//
