LOCUS       NM_001013384            2196 bp    mRNA    linear   ROD 27-JUL-2024
DEFINITION  Mus musculus podocan-like 1 (Podnl1), mRNA.
ACCESSION   NM_001013384 XM_146604
VERSION     NM_001013384.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2196)
  AUTHORS   Farmer,D.T., Mlcochova,H., Zhou,Y., Koelling,N., Wang,G.,
            Ashley,N., Bugacov,H., Chen,H.J., Parvez,R., Tseng,K.C.,
            Merrill,A.E., Maxson,R.E. Jr., Wilkie,A.O.M., Crump,J.G. and
            Twigg,S.R.F.
  TITLE     The developing mouse coronal suture at single-cell resolution
  JOURNAL   Nat Commun 12 (1), 4797 (2021)
   PUBMED   34376651
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2196)
  AUTHORS   Mochida,Y., Kaku,M., Yoshida,K., Katafuchi,M., Atsawasuwan,P. and
            Yamauchi,M.
  TITLE     Podocan-like protein: a novel small leucine-rich repeat matrix
            protein in bone
  JOURNAL   Biochem Biophys Res Commun 410 (2), 333-338 (2011)
   PUBMED   21672516
  REMARK    GeneRIF: a novel SLRP member, 'Podocan-like (Podnl) protein'
            identified by a bioinformatics approach was characterized.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC159266.3.
            
            On Jan 31, 2022 this sequence version replaced NM_001013384.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC063764.1, DQ303463.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849377
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-179               AC159266.3         118172-118350
            180-401             AC159266.3         118455-118676
            402-495             AC159266.3         119477-119570
            496-560             AC159266.3         119847-119911
            561-670             AC159266.3         120034-120143
            671-827             AC159266.3         120819-120975
            828-943             AC159266.3         121513-121628
            944-1601            AC159266.3         122780-123437
            1602-1750           AC159266.3         124147-124295
            1751-2196           AC159266.3         124371-124816
FEATURES             Location/Qualifiers
     source          1..2196
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 40.31 cM"
     gene            1..2196
                     /gene="Podnl1"
                     /gene_synonym="5832418A03Rik; Gm506"
                     /note="podocan-like 1"
                     /db_xref="GeneID:244550"
                     /db_xref="MGI:MGI:2685352"
     exon            1..179
                     /gene="Podnl1"
                     /gene_synonym="5832418A03Rik; Gm506"
                     /inference="alignment:Splign:2.1.0"
     CDS             177..1856
                     /gene="Podnl1"
                     /gene_synonym="5832418A03Rik; Gm506"
                     /note="podocan-like protein 1"
                     /codon_start=1
                     /product="podocan-like protein 1 precursor"
                     /protein_id="NP_001013402.2"
                     /db_xref="CCDS:CCDS52615.1"
                     /db_xref="GeneID:244550"
                     /db_xref="MGI:MGI:2685352"
                     /translation="MRPQELLLLLLMLKWSLAHTEDPAFPHLGDSSQPLPRPCPWRCS
                     CPRDDTVDCAGLDLRIFPDNITRAARHLSLQNNQLRELPYNELSRLSGLRTLDLHSNL
                     ITSEGLPDEAFESLNQLENFYVAHNKLSVAPQFLPRSLRVADLAANEVVEIFPLTFGE
                     KPALRSVYLHNNRLRNTGLPPNTFHGSEVITTLSLSSNQLSYLPPSLPASLERLHLQN
                     NLISKVPRGALSLQTHLRELYLQHNQLTDSGLDATTFSKLSSLEYLDLSHNQLATVPE
                     GLPGTLTILHLGRNCIRHVEAVRLHKARGLRYLLLQHNKLGASALPKGTLRPLRALHT
                     LHLYGNKLERVPPALPRHLQALVMPHNHVAALGARDLVSARALAELNLAYNSLASAHV
                     HPSAFRRLRALRSLDLAGNQLTRLPEGLPASLRSLRLQRNQLRTLEPEQLAGLNKLRE
                     LNLAHNRLRVGDIGPGTWHELQALKVLDLSHNELSFVPPDLPEALEELYLQANRISHV
                     GPEAFLSTPHLRALFLRANRLHMTSIRAEALQGLTHLRVVDTAENPEQVLV"
     exon            180..401
                     /gene="Podnl1"
                     /gene_synonym="5832418A03Rik; Gm506"
                     /inference="alignment:Splign:2.1.0"
     exon            402..495
                     /gene="Podnl1"
                     /gene_synonym="5832418A03Rik; Gm506"
                     /inference="alignment:Splign:2.1.0"
     exon            496..560
                     /gene="Podnl1"
                     /gene_synonym="5832418A03Rik; Gm506"
                     /inference="alignment:Splign:2.1.0"
     exon            561..670
                     /gene="Podnl1"
                     /gene_synonym="5832418A03Rik; Gm506"
                     /inference="alignment:Splign:2.1.0"
     exon            671..827
                     /gene="Podnl1"
                     /gene_synonym="5832418A03Rik; Gm506"
                     /inference="alignment:Splign:2.1.0"
     exon            828..943
                     /gene="Podnl1"
                     /gene_synonym="5832418A03Rik; Gm506"
                     /inference="alignment:Splign:2.1.0"
     exon            944..1601
                     /gene="Podnl1"
                     /gene_synonym="5832418A03Rik; Gm506"
                     /inference="alignment:Splign:2.1.0"
     exon            1602..1750
                     /gene="Podnl1"
                     /gene_synonym="5832418A03Rik; Gm506"
                     /inference="alignment:Splign:2.1.0"
     exon            1751..2196
                     /gene="Podnl1"
                     /gene_synonym="5832418A03Rik; Gm506"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2126..2131
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Podnl1"
                     /gene_synonym="5832418A03Rik; Gm506"
                     /note="hexamer: AATAAA"
     polyA_site      2152
                     /gene="Podnl1"
                     /gene_synonym="5832418A03Rik; Gm506"
                     /note="major polyA site"
     polyA_site      2196
                     /gene="Podnl1"
                     /gene_synonym="5832418A03Rik; Gm506"
ORIGIN      
        1 agtcatcttc tcaggccccg cggggtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
       61 atgtgtgtgt gtgtgcgcgc tctgtgctga gagatggagg gcaattgtag tcacagcaga
      121 cactggagga cgtgagtgct ggacagaagc tggggagagg cacagcaggg ctgactatga
      181 ggcctcaaga gctgctattg ctgctcctga tgctaaagtg gtcgttagca cacacggagg
      241 accctgcctt cccacacttg ggtgacagct cacagcccct cccgaggccc tgtccttggc
      301 gctgctcctg tccccgagat gacacggtgg actgtgctgg tctggacctg aggatatttc
      361 cagacaatat caccagagct gctaggcacc tctccttgca gaacaaccag cttcgggagc
      421 tcccctacaa cgagctgtcc cgcctcagcg gcttgcgcac cctggacctg catagcaacc
      481 tcatcacctc tgagggcctg cctgatgagg cctttgagtc cctcaaccag ctagagaact
      541 tctatgtggc ccacaacaag ctttctgtag cgccccagtt cctgccacgc tccctgcgtg
      601 tcgccgatct ggctgccaat gaagtggtgg agatctttcc tctcaccttt ggggagaagc
      661 ctgcactccg gtctgtgtac ctccacaaca acagactgag gaacaccggg ttgccaccta
      721 acaccttcca cggctcggag gttattacca ccttaagtct ttccagcaat cagctcagct
      781 acctaccacc cagcctgcca gcctccctgg aacggcttca cctgcagaac aatcttatct
      841 ccaaggtgcc cagaggagca ctgagcctcc agactcacct ccgtgagttg tatctccagc
      901 ataaccagtt gacagacagt ggtctggatg caactacctt cagcaagctg agcagccttg
      961 agtacttgga cctgtcccac aaccagctgg ccacagtacc cgagggtctg ccgggaactc
     1021 tgaccatatt gcacctgggt cgcaattgca tccggcacgt ggaagctgta aggctgcaca
     1081 aagcaagggg tctgcgctac ctgctgctgc agcataataa gctgggggcc tcggcgctgc
     1141 ccaaggggac gctgaggcct ctgcgagccc tgcacacgtt gcacctctat ggcaacaagc
     1201 tggagcgtgt gcctcccgca ttgccccgcc acttgcaggc cctggtaatg ccccacaacc
     1261 acgtggccgc gctgggtgcg cgggatctgg tctcagcgag agccttggcc gagctcaacc
     1321 tggcctacaa cagcctggcc agcgcacacg tacatcccag cgctttccgc cgcctgcgcg
     1381 ccctgcgcag cttggacctg gctggtaacc agttgacccg gctgcctgag ggcctgcccg
     1441 ccagtttgcg ctcgctgaga ctgcaacgca accaactgcg gactctggag ccagagcagc
     1501 tcgccggcct gaataagctg cgggaactga acttggcaca caatcggctc cgcgtgggcg
     1561 acattgggcc tggcacctgg cacgagctgc aggcacttaa ggtgctggac ctgagccaca
     1621 atgagctatc ttttgtgccc cctgatctgc ctgaggccct ggaggagcta tacctgcagg
     1681 ctaaccgtat cagtcatgtg ggcccagagg ccttcctcag caccccccac ctgcgtgccc
     1741 tctttctcag ggctaacagg cttcatatga ccagcatcag agccgaggcc cttcaggggc
     1801 ttacacacct gcgtgtggtt gacactgcag aaaacccgga acaggtcctg gtctagctgc
     1861 cacgcaaggg caaggagccc tgagccctgg agggtggggg gaggggggta ggtggccaag
     1921 tagccctggc ctaagctctg agactgtgga ctaagaaagc tctcagctgc ggcctaagag
     1981 gctgtgcctg tcctgcccag agctggccaa agcagtagga gcaggtgtct gctgtaagag
     2041 gtggttaggg gctgaaacag gaagcatgcg gacttgaacg ttctggggcg cagactacac
     2101 cctccagcac agatggtgat gaggaaataa agcagatgcc ctctcatgtt cacaggggac
     2161 tcagtcccag tgagcccgac ccatctcttc cctaca
//
