LOCUS       XM_036164887            9034 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus PMS1 homolog2, mismatch repair system
            component (Pms2), transcript variant X20, mRNA.
ACCESSION   XM_036164887
VERSION     XM_036164887.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9034
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..9034
                     /gene="Pms2"
                     /gene_synonym="Pmsl2"
                     /note="PMS1 homolog2, mismatch repair system component;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 10 ESTs, 161 long SRA reads, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:18861"
                     /db_xref="MGI:MGI:104288"
     CDS             7017..8942
                     /gene="Pms2"
                     /gene_synonym="Pmsl2"
                     /codon_start=1
                     /product="mismatch repair endonuclease PMS2 isoform X10"
                     /protein_id="XP_036020780.1"
                     /db_xref="GeneID:18861"
                     /db_xref="MGI:MGI:104288"
                     /translation="MRHGEGRMRWLTTNEEYTGHWEKGIQNGFGTHTWFLKRIPNSQY
                     PLRNEYIGEFVNGFRHGQGKFYYASGAMYEGEWASNKKQGRGRMTFKNGHVYEGLFSN
                     DHIAQFFETEMDYSQSLDRWSDASQRSRQPRGSSVSAVREPETLRKLDGSESRSVLGT
                     SIELDLTLLLDMYPEESQEEEKKQVEYAVLRNITELRRIYCFYSGLGCDHSLDNTFLM
                     TKLHFWRFLKDCRFHHHNITLADMDRVLSVYNGIPIEEIHSPFRTILLRTFLNYLLQL
                     AYYIHHKEFQNRSPSLFLCFTKLMSENIHPHACQVKGHLFSEQQRTLYSMNYIDKCWE
                     IYTAYCRPNEAPPYELTMKMRYFLWMLKDFRMINKDLTATKFMTVIAEDNPFVYDGTD
                     SNFELELVFLEFFEALLCFSLCCMFDQMTRSYLKVPYDDITTNRYGSTQTILNQSIHR
                     SPSAITSHDSEVHFSSTKSSLDKIGALPDGKIRQSEPKLKKSLSEDKVSKMNFKTQGR
                     GLVFMSPQEKYEKPKDEQKEKLNIWVNNLYVFFVSVLFSAYKREEMLKEKVKENQLQE
                     AELAQQRQIENEELEARLNILREEEARKQDFELDITVLKEPSEIPASQPLTPSPPKED
                     LASIQTSKASPGKKKKK"
ORIGIN      
        1 tgggtgttcc aggagacgcg tcttttcccg agagcggcag cgccaactct cccgcggtga
       61 ctgtgactgg aggagtcctg catccatgga gcaaaccgaa ggcgtgagat ctaaggctta
      121 aagactatgg ggtggacctc attgaagttt cagacaatgg atgtggggta gaagaagaaa
      181 actttgaagg tctagctctg aaacatcaca catctaagat tcaagagttt gccgacctca
      241 cgcaggttga aacttttggc tttcgggggg aagctctgag ctctctgtgt gcactaagtg
      301 atgtcactat atctacctgc cacgggtctg caagcgttgg gactcgactg gtgtttgacc
      361 ataatgggaa aatcacccag aaaactccct acccccgacc taaaggaacc acagtcagtg
      421 tgcagcactt attttataca ctacccgtgc gttacaaaga gtttcagagg aacattaaaa
      481 aggagtatgc caaaatggtg caggtcttac aggcgtactg tatcatctca gcaggcgtcc
      541 gtgtaagctg cactaatcag ctcggacagg ggaagcggca gcctgtggtg tgcacaagcg
      601 gcagctctgg catgaaggaa aatatcgggt ctgtgtttgg ccagaagcag ttgcaaagcc
      661 tcattccttt tgttcagctg ccccctagtg acgctgtgtg tgaagagtac ggcctgagca
      721 cttccaggac gccacaaaac cttttctacg tttcgggctt catttcacag tgcacgcacg
      781 gcgccgggag gagtgcaaca gacaggcagt ttttcttcat caatcagagg ccctgtgacc
      841 cagcaaaggt ctctaagctt gtcaatgagg tttatcacat gtataaccgg catcagtacc
      901 catttgtcgt ccttaacgtt tccgttgact cagaatgtgt ggatattaat gtaactccag
      961 ataaaaggca aattctacta caagaagaga agctattgct ggccgtttta aagacctcct
     1021 tgataggaat gtttgacagt gatgcaaaca agcttaatgt caaccagcag ccactgctag
     1081 atgttgaagt aaatcgatgt ttgcagagat ggagatcttg ggtcagttta acctgggatt
     1141 tatagtaacc aaactgaaag aggacctctt cctggtggac cagcatgctg cggatgagaa
     1201 gtacaacttt gagatgctgc agcagcacac ggtgctccag gcgcagaggc tcatcacacc
     1261 ccagactctg aacttaactg ctgtcaatga agctgtactg atagaaaatc tggaaatatt
     1321 cagaaagaat ggctttgact ttgtcattga tgaggatgct ccagtcactg aaagggctaa
     1381 attgatttcc ttaccaacta gtaaaaactg gacctttgga ccccaagata tagatgaact
     1441 gatctttatg ttaagtgaca gccctggggt catgtgccgg ccctcacgag tcagacagat
     1501 gtttgcttcc agagcctgtc ggaagtcagt gatgattgga acggcgctca atgcgagcga
     1561 gatgaagaag ctcatcaccc acatgggtga gatggaccac ccctggaact gcccccacgg
     1621 caggccaacc atgaggcacg ttgccaatct ggatgtcatc tctcagaact gacacacccc
     1681 ttgtagcata gagtttatta cagattgttc ggtttgcaaa gagaaggttt taagtaatct
     1741 gattatcgtt gtacaaaaat tagcatgctg ctttaatgta ctggatccat ttaaaagcag
     1801 tgttaaggca ggcatgatgg agtgttcctc tagctcagct acttgggaga tcccggtggg
     1861 aggctcatgt gagcccagga ctttgagacc actccgagcc acattcatga gactcaattc
     1921 aaggacaaaa aaaaaaaaga tatttttgaa gcctttttac catgtctgca gttactgttc
     1981 tgcaatttga ctttgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     2041 gtggcaactt ttgactttga gccctcaatg gcgattgaat tctatttgtt ttctcaccca
     2101 cccaccctca ccccagtgtc tgaggcagcg ttttgtgaaa ctcaggcttc tcttgactcg
     2161 ttttgtcacc aaggttggcc tagaactgag cttgcctcca cggcccaaga gctgggatcc
     2221 caggtgtgtg tcacatatgc ccacattaaa aaaatatggt cttttttaat tagcagctct
     2281 caatcccgac tcatgaaatt taagaacaaa ggacttcttt acctggttgg aaagaaattg
     2341 ctgactagga ttgggatgcc tttggagtgg gtagaaaggg atgagacggg cttccagccc
     2401 tggctgatct ggaacttgct atttagagca ccccagcttg aactcatatt cccctgcctc
     2461 tgcctcctga attctaggat taaagtcacg agccaccaca cctagcttgg ggtcactatt
     2521 ttttaactgt tcctcagtgc agctagagtg gaaagttcca ttccaggcaa gggctgggcc
     2581 gaggcaggga gtagaagata gtctgtgccg tagctcagtg ctgtaatttg atttccttgg
     2641 ggtgtgaact atgggttttt tgttctgttt ctgtggagtc ttgtccattg gaactgtgtg
     2701 agagatagaa attacaatgc ctcctgtgaa gtccaggcgg cagttaggaa gagtggtgac
     2761 tggcatgggc agttgcccct ccagcttcct ctgtgctgtg ggcctcctgg agaagaggag
     2821 gtgccatggt tcatgtgtgc cgaggttgta aaggcttagc tacctgcatt tgttaatgtc
     2881 aaagtccatg ctactgctgg gtagagtggc acagacctgc aagttcaagc acagcagagg
     2941 caggctgagg ccatcctggg ctgctccata gtcccaggcc agagagggtt acataccaaa
     3001 attctgtctc aagacacaca ctgctagtcc agctccaacc acagggtctc agaacattca
     3061 caggagcact gcaagttggg gtggtacagt aatgccccct caaaagagtc tgcttctcat
     3121 caccagaagc tgtgactgtt accttatatg tgacaaaggg gactcttgag atgggattaa
     3181 ggagcccagt aatggggaga ttgacctgtg cagtctgaag ggcactgtcc gtcacattag
     3241 ttcttcaaag tagaggacaa gtatactgac tcttcctgaa ccctccaagt aagccaggcc
     3301 tgcaacttac cgctgataga ctatggcttc aagccactgt ttggtggaaa acaaaagctt
     3361 atgttattct attttatggt gaagaaacct gctgagggag gtcacatggt ttgcagttag
     3421 atcgggaaaa tccaggtcaa gtacatcctg ctcccttgcc tagccagttc ctcccttctt
     3481 ggatgcatta cagctttgta ctggtacccg cggccccttt aagaggacag gaggcggggc
     3541 ttgtttcagt tgcttagaga ccacctagct cccaggacgc aaagtcttcc ttaataatgc
     3601 cactttggga tctgcaggcc tggccagagc aggtaaaacc catccgtgct ttgaaacaaa
     3661 actgcagtct gccaaagaaa tcattggcta attctgcttg taaagaaaac gcgcacgtct
     3721 tccaaaagcc atggtgaaag aaaagaaaaa agcggacaag aaaggagata agtcagcccg
     3781 ctctccctcc tccatttctg ataacccaga agcctcgaaa caagatagca atgccagtaa
     3841 gcaagaagtg gcccccagtg ctgttgtccc agtcgtggaa acaccactca agcaagcccc
     3901 gaaaagagac tcagtacaaa tggagcagag tgaagaggag actcagtacg aagagcccat
     3961 cctgaccaag ctcatagtgg aaagctatga aggggagaaa gtccgtggac tgtatgaggg
     4021 agaaggcttt gctgtctttc aaggcggaaa cacctaccac ggtatgtttt cagaaggact
     4081 gatgcatgga caaggcactt acatttgggc tgacggattg aagtacgagg taaagtattg
     4141 tcgtgtgtaa gagctgtcag ggattaattg tagaattaat cacaggtcgg cgctctgcac
     4201 tttttttttt taaagattta tttatggggc tggagagatg tacaatgtac tcatataaat
     4261 aaaattaaat aaaataaaca ttttttaaaa agatttattt atttattgta tataagtgca
     4321 ctgtagctgt cttcagacac accaaaagtg tgcgtcagat cacattgcag atggtgtgag
     4381 ccacccatgt ggttgctggg ctttgaactc agttagtgct cctaaccact gaaccatctc
     4441 tccagccccg ctccctgcac tatttttaaa gaattcattt ttatttttta aagtatgtgt
     4501 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtctcg tgtctgtgtg ttgttatggc
     4561 tgttgacttg aggcggtctc agaggctaca ggaagataac ggatactcta gagctgcagt
     4621 cacatacaat tgggagctgc tggtatggat gctggaaacg gcactcatgc tctaactgtt
     4681 gaaccatctt tctagccctc tagatagaca attcttataa aagtaagtca agttaggtgt
     4741 ggtagcacac gcctttaatc ccagtacttg ggaggcagag gccaggaggt ctctgtgagt
     4801 ttaaagccag cctgatctac agaaccagtt ttaggacagc caggctacat actgagacac
     4861 tgtctcaaaa aaacaattta aaaagaaaga aagaaagtta gcatagttag gatgatatca
     4921 tggaatccca gtacttggga agctgaggca ggaggacacc ctgagtctac ataataagat
     4981 gctacttctg aaaaagaaaa aaactcaatg caaagggcag tgttagcaca ggaccaaacc
     5041 tggagagaac aggacgatgc agaggccaac ttgtcactcc atgtagtaac gcggtgactg
     5101 catcaggtgc ctgcgaatcc ctggagctgg ctttatgtgt agccccggag gtgtcctgtg
     5161 tttacacatc acacgggtgg cgttcagtgg tgatctgtgt attctctgcg tgcattgcac
     5221 acagatagat gtatgttaaa tccctcatgc tttatctgaa cacagtttct ctatctcttt
     5281 tattccttta ttttttttac taactaagcc atccccatcc ccgcagagcc tctctttttc
     5341 ctggctgcat gcatcccatt atgggggttt cacaaaaacc atctgggttg ctgggctgag
     5401 gggaagtgag tatttttaaa ctgattgtga gaacagattt gtcctctgag actgtgccag
     5461 tttcagctcc cactctcaaa gcctgtgaag tctgaagtgc tgttctagaa atctccgctg
     5521 cagagttact aatgccatgg tgtccataaa tggtaagaga catttaaggc aaatacacgg
     5581 agcacgtgga ttcagagggc agctgggcag cgggcacgag ctgcagaggt acagggatgg
     5641 cgagagaggg ttgatcctcc actgaggggg cctggggatc caccctcaac agtgtgttag
     5701 ggcccagttt tctgagagaa ctccctttcc gtgcaacccc caccttccag cctgctgcca
     5761 acatggaagg tttctgatcc ctgagtggtg gttttgccag gcaggtcctt ctgtgtcact
     5821 gtctctggaa atcctctggc gtatgggggc tgcgggagga tccttcttgg caagcacaga
     5881 gccctccaca atcaacccat cttagagagt tcacgggtgg gatcttggct ctcgaagcat
     5941 cctcaggcac gttgagccaa gtagcaccaa tatgctctgc tgaactggtg atcatcctgt
     6001 gtgtttggag gcttgggact gaggcagagc accagcttag catgtggggg aaccctggtt
     6061 cattacccag tgccactacc accattgcca acgggaccac tctaccatct ttgggccatg
     6121 tcaccatgag ctgctcacaa tgaaagcggc ctcagccaac acagtgagtt ctttagaagt
     6181 tgccaatgag gtaggccatt gactgcagag tattttgatg gaccatgggg agacagaagg
     6241 ctttctgtga gtgatcagta cctggctgat cattcagacc tctccacggt ggaccctgag
     6301 aggctaaagt taaggtcagg attggcagcc accacattgc cgggtcacct gcttgcttct
     6361 tggagcatgg tgtaaatgaa accttcccag tgttttattc tgcgtggact tccgtgctgt
     6421 ggaagaacga ggtgagggga taggaaacac agggacgagg acatgacgtg ccgatccccc
     6481 acacccacag aaaagccagg tcagtgtcag agtggtcaaa gttccttcat tgccaccccc
     6541 tatcgtcctc ctggtcattt tgccctaggg ggactttgtg aagaatatcc ccatgaacca
     6601 cggggtgtac acatggccgg acggcagcac ttatgaagga gaggtgacca atggcatgag
     6661 gaatggattt ggtatgttca agtgtggcac acagcctgtg tcctacatcg gccactggtg
     6721 tcatggcaag agacatggga aggtaagcag cctctgccat ctgacccact gccatgatgt
     6781 tctgcctcaa cactggccca gaactaacag aactgatggt tatagactga aaactctgga
     6841 accaccaacc aaaataaata atccctctct tcagttgttt ctgtaagggc tccatctatt
     6901 acaatcaaga ggggacctct tggtatgaag gagactgggt atacaacatc aaaaagggct
     6961 ggggaataag atgctataaa tcaggaaaca tatatgaagg gcagtgggag aacaacatgc
     7021 gccatgggga aggcagaatg aggtggctca caacaaacga ggagtacacg ggccactggg
     7081 agaaggggat ccagaatggc tttggaacac acacatggtt cctaaagaga atccccaact
     7141 ctcagtatcc cttgagaaat gaatacatag gggaatttgt aaatggcttc cgtcatggac
     7201 aagggaaatt ttactacgcc agtggagcca tgtatgaggg agagtgggct tccaacaaaa
     7261 agcagggcag gggcagaatg accttcaaga atggccatgt gtatgaaggt ctgttttcca
     7321 atgatcacat tgcacagttc tttgaaactg aaatggatta ctcacagagc ctggaccgtt
     7381 ggtcagatgc ctcgcaaagg agccggcagc ctcgggggtc ttcagtcagt gctgtcaggg
     7441 agcctgagac cctgcggaag ttggatggca gcgaaagccg ttctgtgcta ggaacgagta
     7501 ttgagctgga cttaactctg ttgctggaca tgtaccccga ggaaagccag gaggaggaaa
     7561 agaagcaggt ggaatacgca gtcctgagga acatcacaga gctaaggagg atctactgct
     7621 tctacagcgg cctcgggtgt gaccactcgc tggacaacac ctttctgatg acaaagctgc
     7681 acttctggag attcctgaaa gactgcaggt tccatcacca caacataact ctggcagata
     7741 tggacagggt attgagtgtc tataacggca tcccaatcga agaaatccac tctccattta
     7801 gaaccatact cttaagaaca ttcctgaatt acctcctgca gctggcttac tacatccatc
     7861 acaaggagtt ccagaacaga agcccgtcgc tcttcctgtg ttttacaaaa ctgatgtctg
     7921 agaacattca cccacatgcc tgtcaggtaa aaggtcactt attcagtgag caacagcgga
     7981 cactctactc aatgaattac attgataagt gctgggagat ttacacagcc tactgcagac
     8041 ccaacgaagc cccaccctat gagctgacga tgaagatgag atatttcctc tggatgctga
     8101 aagactttag gatgataaat aaagacctaa ctgcgaccaa attcatgact gtgatagcgg
     8161 aggacaaccc tttcgtgtac gatggaactg acagcaactt cgagcttgag ctggttttcc
     8221 tggaattctt tgaagccctc ttatgcttct ctctctgctg catgtttgac cagatgacta
     8281 gatcctatct aaaagtcccg tatgacgaca tcactacaaa ccgatacggc agcactcaga
     8341 cgatactgaa ccagagcatc cacaggagcc cgagtgcaat cacaagccat gactccgaag
     8401 tccacttcag cagcaccaag tcgtccttag acaagatagg cgctctgcct gatggtaaaa
     8461 tcaggcagtc agagcccaag ctcaagaagt cgctgagtga ggacaaagtc tccaaaatga
     8521 acttcaagac tcaaggaaga ggcctggtgt ttatgtctcc acaggagaaa tatgaaaagc
     8581 ccaaagatga acagaaagag aaactcaaca tatgggtgaa caacctctat gtcttctttg
     8641 taagtgtgct cttcagtgcc tacaaacgtg aagagatgct caaggagaaa gtgaaggaaa
     8701 atcagctcca ggaagcagag ctggctcagc agaggcagat agagaacgaa gagctagaag
     8761 ccaggctgaa catcctacgg gaagaggagg ccaggaaaca agacttcgaa cttgacatca
     8821 ctgtgctcaa ggagccatcg gagatcccag cctctcagcc tctcacgccc agccccccta
     8881 aagaggacct ggcttccatc cagactagca aggccagccc tggcaagaag aagaagaagt
     8941 gaaggcacgc agtgtcatgg tcgagctgca aggacaagta gacagaaagc tgagacaaat
     9001 gttccataaa ataaagtgtt tgcattgagc ttct
//
