LOCUS       XM_011238497            5719 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus PMS1 homolog 1, mismatch repair system
            component (Pms1), transcript variant X5, mRNA.
ACCESSION   XM_011238497
VERSION     XM_011238497.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000067.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011238497.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5719
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="1"
     gene            1..5719
                     /gene="Pms1"
                     /note="PMS1 homolog 1, mismatch repair system component;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 17 ESTs, 171 long SRA reads, 8 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 5 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:227099"
                     /db_xref="MGI:MGI:1202302"
     CDS             267..3020
                     /gene="Pms1"
                     /codon_start=1
                     /product="PMS1 protein homolog 1 isoform X1"
                     /protein_id="XP_011236799.1"
                     /db_xref="GeneID:227099"
                     /db_xref="MGI:MGI:1202302"
                     /translation="MKQLPAATVRLLSSSQTITSVVSVVKELIENSLDAGATSIEVKL
                     ENYGFDKIEIRDNGEGIKAVDVPVMAVKYYTSKISSHEDLGNLTTYGFRGEALGSICN
                     VAEVVVTTRTSADDFSTQYVLDGSGHILSQKPSHLGQGTTVTALKLFKNLPVRKQFYS
                     TAKKCKDELKNVQDLLISYGVLKPDVRITFVHNKAVIWQKSRVPDHRMALMSVLGTAV
                     MGNMESVEQHCEQSQIYLSGFFPKHDADHNSTSLSTPERSFIFINSRPVHQKDILKLI
                     RRYYNLKCLKESTRLYPIFFLKIDVPSAEVDINLTPDKSQVLLQNKESVLIALENLMM
                     TCYGPLPTTESSENNRVDISSANMVVSQTAETDVLFNKMESFGNNYPNADTSAIHFQK
                     DESRKNIDHHLNEQINIGNYFDGHFSGDINKDTFQNIPMNNLSSETNQSNHSETHSVG
                     SMEHIQGENGRNGTGGSGGDGRETLPEKALEICADDWSKGNLCNSMGENIEPVKILVP
                     QKSLSCKVTSSHPRLEPETLSDGPCSRTSDVIHNRSGRLTAYDLISSRAVKKPMSASA
                     LFIQDHRTQFLTENPKTGLEDATEQIKARWETLSEEEKHKYEEKAKKDLERYNNQMKK
                     AIEQETQVSLKDGRKKRATSSWGWTQKHKVKDSSNQPKLDELFQSQNEKKKSENIKIT
                     EIPFSMENLKANLKKQKEVDLEEKDEIYLIHSLKFPDSWLVTSRADVMLLNPYRVEEA
                     LLFKRLLENHKLLAEPLEKPIILTESLLNGSHYLEVLYKMSTVEERGSGSAYLCDPRL
                     TANGFKIRLTPGVSSTENYLEIEGMAQCLPFYGIMDLKEILNAIVNKNAKEIYECRPR
                     KVINYLEGEAVRLSRQLPMYLPREDVQDLIYRMKHQFGKEIKGCVHGRPFFHHLTHLP
                     GTS"
ORIGIN      
        1 gcgagcgcgg gtcctgctga gcgcagccgt gcttcggtcc gaaggacgtc cagcgaagta
       61 ggccgtgcaa ctcagggttt gctgagtgct tgccgctgtg ggtggtgaat gcgcgctaga
      121 agaatcttgc tattaagcac ggactgcttt gaacgcttca tcttcttacc tcagccttcg
      181 aagacctagg attgtagcta ttgactcagt gagctgatat ggtgagcttg gaccaggaca
      241 tttaagctac tcaggtgcaa gctaggatga aacagttgcc tgcagcaaca gttcgcctcc
      301 tgtccagttc tcagacaatc acgtcagtgg tcagcgttgt gaaagagctc attgaaaact
      361 ccttggatgc cggagccacc agcattgaag ttaaactgga gaactatgga tttgataaaa
      421 ttgagattcg ggacaatggt gagggcatca aggctgtaga tgtccctgta atggcagtga
      481 agtactacac ctcgaagatc agcagtcatg aagaccttgg aaatctgaca acttatggtt
      541 ttcgtggtga agccttgggg tcaatatgta atgttgcgga ggtggtagtt acaacaagga
      601 catctgctga tgactttagc actcagtatg ttttagatgg cagtggccac atactttctc
      661 agaagccttc acatcttggt caaggtacaa ctgtaactgc tctaaagttg tttaagaatc
      721 tgcctgtaag aaaacaattt tactcaacag ctaaaaagtg taaagatgaa ctaaaaaatg
      781 tacaggacct tctcataagc tacggtgtcc tgaaacctga tgtgaggatt acttttgtac
      841 ataataaggc agttatttgg cagaaaagca gagttccaga tcacaggatg gctctaatgt
      901 cggttctggg aactgctgtc atgggcaaca tggaatctgt tgagcagcac tgtgaacagt
      961 cgcagattta cctaagtgga ttcttcccaa agcacgatgc agaccacaat tccacaagtc
     1021 tttcaacccc agagagaagt ttcatcttta ttaatagtcg gccagtacat caaaaagata
     1081 tactaaagtt aattcgacgc tattataatc tgaagtgcct aaaggagtct acccgcttgt
     1141 atcccatttt ctttctgaaa attgatgttc catcagctga ggtggatata aatctaacac
     1201 cagataaaag tcaagtgtta ttacagaata aggaatctgt tttaattgct cttgaaaatc
     1261 tgatgatgac ctgttacgga ccactaccca ctacagagtc ttctgaaaat aacagagtag
     1321 atatttcctc agccaacatg gttgttagtc aaacagccga aacagatgtg ctttttaata
     1381 aaatggaatc atttggaaat aattatccaa atgctgatac ttcggctatt cacttccaaa
     1441 aggatgaatc tagaaaaaac attgatcatc atttaaatga acagataaat ataggcaatt
     1501 attttgatgg tcattttagt ggtgacatta ataaggacac atttcaaaat attcctatga
     1561 ataatttatc atcagagact aatcagagta atcacagtga aactcattct gtaggttcta
     1621 tggagcacat ccaaggagaa aatggcagga atggtacagg aggaagtggg ggagatggga
     1681 gagaaacact tcctgagaaa gctctggaaa tctgtgcaga cgattggagc aaaggaaatt
     1741 tgtgtaattc aatgggagag aatatcgaac ctgtgaaaat tttagtgcca caaaagagct
     1801 tatcatgtaa agtgaccagt agtcacccac gccttgaacc agagactctc agtgatggtc
     1861 cttgtagcag aacatcagat gtaatccata acagatctgg acggcttaca gcctatgact
     1921 taattagcag tcgagcagtc aagaagccca tgtcagccag tgccctgttc attcaagacc
     1981 accgcactca gttcctcaca gagaatccca agactggttt ggaggatgcg acagaacaaa
     2041 tcaaagcacg atgggagaca ctgagtgaag aggaaaagca caaatacgag gaaaaggcta
     2101 aaaaagactt ggaacgatac aataaccaaa tgaagaaagc tattgaacag gagacacaag
     2161 tatcattgaa agacggcagg aaaaaaaggg ccaccagttc gtggggctgg acacagaaac
     2221 ataaggtgaa agactcatct aatcagccaa aacttgatga gctctttcag tcccagaatg
     2281 aaaagaagaa gagtgaaaat attaaaataa cagagattcc cttttctatg gaaaacttaa
     2341 aagcgaactt gaagaaacaa aaggaagttg acttagagga gaaggatgag atttacctga
     2401 tccacagtct caagtttcct gattcgtggc tggtcacgtc cagagccgat gtcatgttac
     2461 tgaacccata cagagtggag gaagccctgc tatttaaaag acttcttgag aatcataaac
     2521 tccttgcaga accactggaa aagccaatta tattaacaga gagtcttctt aatgggtctc
     2581 attatctaga ggttttatat aaaatgtcaa cagttgaaga aagaggcagt ggatcagctt
     2641 acctgtgtga ccctcgtctt acagcaaatg gcttcaagat cagattgaca ccaggagttt
     2701 ccagtactga gaactacttg gaaatagaag gaatggctca gtgtctccca ttctatggaa
     2761 taatggattt aaaggaaatt cttaatgcta tagtaaacaa aaatgcaaag gagatttatg
     2821 aatgtagacc tcgaaaagta ataaattatc tggagggaga agccgtccgt ctatccagac
     2881 agctacccat gtacttacca agagaggatg tccaagatct tatctataga atgaagcacc
     2941 agttcggaaa agaaattaaa ggctgtgttc atggccgccc attttttcat catttgaccc
     3001 atcttccagg aacttcatga ttaagcttat gaccattagt tactatggaa actgatgtgg
     3061 ttcttaaccc actttgtcct atcatgtatc aaagtgatta tttgtatact ggaaaaggtt
     3121 ttttacagct ataaaatatg tataaataaa taatatggac tataaaattt tgttttcacg
     3181 tccaaccttc aaaccaattg taggttgtag gctccacagt agaaggtagg tgtgttcttg
     3241 aatgcttgat ttattaagtt aaccctgttt agattttatc cctcaaaaca gccttagctg
     3301 gcattccaaa gaggactttt cagtcctgct ttaaagtagg atggggcagt ggggaaggaa
     3361 agtatgacaa aataacatat tgctgcctct ccaatatgat aatttcttag ctttagtgtc
     3421 agattttgtc ataaaatatg gaagggaagg taaacgtttt taccagaaaa attagattac
     3481 agtatctttt tctcacatat attccttcac aaaccaggtc tgtattccag tattttacca
     3541 aaactggaat atgatgtgtt taatacatgt atttgttgtc tagagtaaga tatgttggag
     3601 tgggtatatt gtctctatag ttctcatggg tcatctataa actctaaaaa gtgtataaac
     3661 tattttttat aaactattgt gtatatttat aaacacataa aaagtgtaat acctagggtt
     3721 gttccttttg ctcagcctgt ttccccacca aagtttattt ttcctgtgac ccaaatattg
     3781 ctaccataca tgcactctct ctctttgtaa atttggggca tcttactgac tctgtttgtt
     3841 tggtgtttgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     3901 gtgtgttgcg tgtgcatgtt tgcctacatt cagaagtagg tagaggaaag cactgttccg
     3961 tggtattgct atctccattg atctcttctg gcaggatctc tcactgtttt tctgccaggc
     4021 tgtctggcca ttgctgagtt tacaggctca cactaccaac ccagcttttc tctccatgtt
     4081 gtgtgtgttg aggcacggaa gctggggatc agaactcaat tccattcata ggaaatgccc
     4141 ctaccttaga gccatcttcc acgcccagtt aatcctcttc aattggacaa attgaggggt
     4201 aacaggtcac caagaaacag aagaaattgc atcatacatc gcactacccc tgaacaccac
     4261 caacaaatgt ggattcattt tctaggtaaa tcagattggc cctacctact acagtggttt
     4321 ctcgagtaga gaaactaatt tttgtatttc tcatctgagc atcagtttag gcttgcagat
     4381 actatcaaca ctcatcacaa gacagagtgt tcttattaac agatgactta ccatgaaaaa
     4441 tgggtctaaa ggggcctcag ggcccacaaa gtataagtat ttgatagtag gggtgatata
     4501 agacattcct tgacgccact ttgacaaatg cttctagagg aaatgaactc ggtccacaca
     4561 tctcttgact actttggagc agtagggtat gggagctgcc tgctgttctc atggttgtag
     4621 ttaggtcagc caagttttgt taccggctct tgactctgtt ggctggagcc taccttccaa
     4681 gagctcccct ccccctcccc cagaaggccc ctcccccctc aatcccagca acacccacgc
     4741 gccctgcaca atatggctgg agcaggcagc aacggagaga ccttggctac ccggatggag
     4801 gtaacggctg gggtttggga gaacggagca ggatgttaag gatgggttag aaatatcccg
     4861 agagaaaggt cttaaattac tcactcctcc tctagggttc attgtcctaa gctggagaaa
     4921 tggaagactt ttaaatgtca ttttcccaga gcactgttgg tatcaaaatg tgtttataat
     4981 ggtcgggtcg tcatggtgct tacacccaca tggaggccta ctggaggtga ggcctacggg
     5041 tcgcttttgt acaaatactt tgccagagca gaagccagga gtggtgtaat caagtctatg
     5101 gcattttagg atatttacac agttaaaagt gttgggtcca atttagatga acaagtcttt
     5161 gttttccttg attatttaaa gccctcaacc ccaccccctg cttgtttttg gtttctctgt
     5221 gtagcttggc tgtcctggaa ctttctctgt ataccaggct ctggcttcaa actcattcac
     5281 ctgctcagcc tccctcgcac tgggattaaa ggagtgcact gccaccaccc ggtttccttg
     5341 attgtttagt tgtgatttta tataaacttt gtggcttagg ttgcagtcac tggaacccat
     5401 acctctacag caaacgtttc tcactaaaag tgtaaagaaa atgttttgcc ctgtttattt
     5461 tcatcatatg tttgcaagat ctctccagtc tcataaaagg tggaggaggg gagtgagcgc
     5521 ccttaaaatc aggttagggc ttactcatag aaagtaggtt aacttgacag ttccaactgc
     5581 aaaagaaaat gctagtgaga cacaaacaaa acactggtgg catactggtt ggagctcagc
     5641 tacagaacat ttgcttagca tgaacaaatg atcaagtctc tggacttggt tcccagcatg
     5701 accatcccct tgaaaaaaa
//
