LOCUS       XM_036161058            3932 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus plakophilin 4 (Pkp4), transcript variant
            X31, mRNA.
ACCESSION   XM_036161058
VERSION     XM_036161058.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3932
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..3932
                     /gene="Pkp4"
                     /gene_synonym="5031422I09Rik; 9430019K17Rik; Armrp; p0071"
                     /note="plakophilin 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 8 mRNAs, 72 ESTs, 1554
                     long SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 45 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:227937"
                     /db_xref="MGI:MGI:109281"
     CDS             629..3175
                     /gene="Pkp4"
                     /gene_synonym="5031422I09Rik; 9430019K17Rik; Armrp; p0071"
                     /codon_start=1
                     /product="plakophilin-4 isoform X16"
                     /protein_id="XP_036016951.1"
                     /db_xref="GeneID:227937"
                     /db_xref="MGI:MGI:109281"
                     /translation="MTAVPQHLGPSLQRTVHDMDQFGQQQYDIYERMVPPRPDSLTGL
                     RSSYASQHSQLGQELRSAVSPDLHITPIYEGRTYYSPVYRSPNHGTVELQGSQTALYR
                     TGSGIGNLQRTSSQRSTLTYQRNNYALNTAATYAEPYRPVQYRVQECSYNRLQHTGPA
                     DDGATRSPSIDSIQKDPREFAWRDPELPEVIHMLQHQFPSVQANAAAYLQHLCFGDNK
                     VKMEVYRLGGIKHLVDLLDHRVLEVQKNACGALRNLVFGKSTDENKIAMKNVGGIPAL
                     LRLLRKSIDAEVRELVTGVLWNLSSCDAVKMTIIRDALSTLTNTVIVPHSGWNNSSFD
                     DDHKIKFQTSLVLRNTTGCLRNLSSAGEEARKQMRSCEGLVDSLLYVIHTCVNTSDYD
                     SKTVENCVCTLRNLSYRLELEVPQARLLGLNELDDLLGKESPSKDSEPSCWGKKKKKK
                     KRTPQEDQWDGVGPIPGLSKSPKGVEMLWHPSVVKPYLTLLAESSNPATLEGSAGSLQ
                     NLSAGNWKFAAYIRAAVRKEKGLPILVELLRMDNDRVVSSVATALRNMALDVRNKELI
                     GKYAMRDLVNRLPGGNGPSILSDETVAAICCALHEVTSKNMENAKALADSGGIEKLVN
                     ITKGRGDRSSLKVVKAAAQVLNTLWQYRDLRSIYKKDGWNQNHFITPVSTLERDRFKS
                     HPSLSTTNQQMSPIIQSVGSTSSSPALLGIREPRSEYDRTQPPMQYYNSQGDTTHKGL
                     YPGSSKPSPIYISSYSSPAREQNRRLQHQQLYYQDDSTRKTLDAYRLYLQSPRSYEDP
                     YCDDRVHFPASTDYSTQYGLKSTTNYVDFYSTKRPSYRAEQYPGSPDSWV"
ORIGIN      
        1 gtttctgaca ctattcatcc caacaactat ctcatcagga cagagccaga acaggggacc
       61 ctctactcac cagaacagac ttctctccat gaaagatcgt tgggaaactc aagaagttca
      121 acacagatga attcttactc tgacagtggg taccaggaag cagggagttt ccacaacagc
      181 caaaccgtga acaaggcaga cagcagacag catccattca caggatcaac aagtaaccat
      241 gtggtgagga cttcaagagc tgaaggacaa acactggttc agcacaggcg tgtctccttc
      301 aagggggtca ctgagaactt ctctgggtag tggatttggc tctccatcag tgacggactc
      361 ccgacctctg aaccccagtg cttactcctc cagcacgctc cctgcacagc gggccgcctc
      421 tccatactca cagagacccg cctccccaac agccgtgcgc cgggtcgggt ctgtcacctc
      481 ccggcagacc tccaatccca acggaccagt ccctcagtac cagaccacca ccagggtggg
      541 gtccccactg accctgactg atgcccagac tcgagtagct tccccatccc aaggccaggt
      601 ggggtcatcg tccccgaaac gctctgggat gaccgccgta ccacagcacc tgggaccttc
      661 actgcaaagg actgttcatg acatggacca atttggacag cagcagtatg acatttatga
      721 aaggatggtt ccacctcggc cagacagcct gacaggctta cggagttcct atgccagtca
      781 gcatagtcag cttgggcaag agctccgttc agctgtgtct cctgacttgc acatcactcc
      841 tatctatgaa gggaggacct actacagtcc agtgtaccgc agcccaaacc acgggaccgt
      901 ggagctccag gggtcacaga cagcattgta tcgcacaggc tcaggtattg gaaatctaca
      961 aaggacatcc agccagcgaa gcacccttac ataccaaaga aataactatg ccctgaacac
     1021 agcagctacc tatgcggagc cctacaggcc agttcagtac cgagtccaag agtgcagcta
     1081 taacaggctg cagcacacag ggccagctga tgacggtgcc acaagatccc catcaataga
     1141 cagcattcag aaggacccca gggagtttgc ctggcgtgac cctgagctgc cagaagtcat
     1201 tcacatgctg cagcaccagt tcccatcggt ccaggcaaat gccgcagcct acctgcagca
     1261 tctgtgcttt ggtgacaaca aagtgaagat ggaggtgtac aggctagggg gaatcaagca
     1321 tctggtcgac ctgttggacc acagggtgtt ggaagttcag aagaatgctt gtggcgccct
     1381 tcgaaacctt gtgtttggca agtcaacaga cgaaaataaa atagcaatga agaacgttgg
     1441 tggaatccct gccttgctgc gactgttaag aaaatccatt gatgcagaag taagggagct
     1501 tgttacaggg gttctttgga atctatcttc gtgtgatgct gtaaagatga caatcattcg
     1561 agacgcgctc tcaaccttaa ccaacactgt gatagttcca cattctggtt ggaataactc
     1621 ttcctttgat gatgatcata aaattaaatt tcagacctca ctggttcttc ggaacacaac
     1681 aggttgcctg aggaacctca gctctgccgg ggaggaagca cgaaaacaaa tgcgctcctg
     1741 cgaggggctg gtggactcgc tgttgtatgt gatccacacg tgtgtgaaca cttctgacta
     1801 cgacagcaag acagtggaga actgtgtgtg taccctgagg aacctgtcat accggctgga
     1861 gctggaagtc cctcaggccc ggctgctcgg actgaacgag ctagatgact tactaggaaa
     1921 agagtctccc agcaaagact cggaaccaag ctgctgggga aagaagaaga aaaagaaaaa
     1981 gagaacgcca caagaggacc aatgggatgg agtcgggcct atccctggac tgtccaagtc
     2041 ccccaaggga gtcgagatgc tgtggcatcc atcagtggta aagccgtacc tgactctgtt
     2101 agcagaaagt tccaaccctg ccaccttgga aggctctgcc ggatccctgc agaacctctc
     2161 tgctggcaac tggaagtttg cagcatacat ccgggcagct gtccggaagg aaaaagggct
     2221 tcctatcctt gtcgagcttc taaggatgga taatgacaga gttgtctctt ctgtggccac
     2281 tgccttgagg aacatggcgc tggacgttcg caacaaggag ctcataggta aatacgccat
     2341 gcgagacctg gtgaacaggc ttccaggtgg caacggcccc agcatcctgt ccgatgaaac
     2401 cgtggcagcc atctgctgtg ctctgcacga ggtcaccagc aaaaacatgg agaatgccaa
     2461 agctctggcc gactcgggag gtatagagaa gctggtgaac ataaccaaag gcagaggaga
     2521 cagatcctct ctgaaagtgg tgaaggcggc agcccaggtc ttgaatacat tatggcagta
     2581 ccgggacctc cggagcattt acaaaaagga tgggtggaat cagaaccatt ttattacacc
     2641 tgtgtccacg ctagagcgag accgattcaa atcacaccct tctctgtcca ccaccaacca
     2701 acagatgtcg cccatcattc agtcagttgg cagcacctct tcctcaccag cactgttagg
     2761 aatcagagag cctcgctctg aatacgatag gacccagcca cctatgcagt attacaatag
     2821 ccaaggggac accacacata aaggcctgta ccctggctcc agcaaacctt caccaatata
     2881 catcagttcc tattcctcac cagcaagaga acaaaataga cggctacagc atcagcagct
     2941 gtactatcaa gatgactcca ccaggaagac cttggatgca tacagactgt acctgcagtc
     3001 tcctcgaagc tatgaagacc cttattgtga tgaccgagtt cacttcccag cttctactga
     3061 ttactcaacg cagtacggac tgaaatcaac cacgaattat gtagactttt attccactaa
     3121 acgaccttct tatagagccg aacagtaccc tgggtccccg gactcctggg tgtagcatca
     3181 agacggctgc ctgctgaggg gcgctttcct tctgactctg tttggattga ggggaagtcc
     3241 gtcttgctga tgatggtgac cgtgaaagtg aaatggaagg gatgagtgaa gaggttttgg
     3301 tttgtttgtt tgttttttct ttttttgagg aattttcagg gaagtgagga aacccttggg
     3361 agaggacttt gtacgcgctg tgtaggtgtt agatctaatt acttgtagag tctagtggtg
     3421 aaggtgtggg tgacgtgctg ggaggcttga gacgtgggtg agatgagatg ggtatgtgta
     3481 ggtcaaatca aatgacagat gattttttta atgtgaataa agttatgttc agatagtttg
     3541 tacagaaaaa ataataataa aatggatgcc cttcatgttt tattgctatt actaaatgtc
     3601 aagattgtat gctattatgt cttgtaaaaa ttccttctgt tggtgtaaat atggaaatgc
     3661 cacattggtt aagtgccatc aattgtaatg cagtgtgtca tttgaaaaga gatttgaaga
     3721 actgacagct taaagcccaa gcgggaaacc cgcccgggaa ctgttcgcag ttgacaacaa
     3781 actctgacgc cctctgtttt cagtgagtag tgaactccgg aagcacaaag gccagcgtga
     3841 cagcagcgcc atgctcatcc ccctcacagg acacttcact gccattttct atgcacatgg
     3901 aagaataata aatgtggaaa tttcatcctg ga
//
