LOCUS       XM_017312822            9023 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus polycystic kidney disease 1 like 3
            (Pkd1l3), transcript variant X2, mRNA.
ACCESSION   XM_017312822
VERSION     XM_017312822.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000074.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_017312822.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9023
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="8"
     gene            1..9023
                     /gene="Pkd1l3"
                     /note="polycystic kidney disease 1 like 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 3 ESTs, 826 long SRA reads, 1 Protein, and
                     94% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:244646"
                     /db_xref="MGI:MGI:2664670"
     CDS             132..6749
                     /gene="Pkd1l3"
                     /codon_start=1
                     /product="polycystin-1-like protein 3 isoform X2"
                     /protein_id="XP_017168311.1"
                     /db_xref="GeneID:244646"
                     /db_xref="MGI:MGI:2664670"
                     /translation="MLLQRRSWLWLYIRIGVILGDILGRKPSIREQHGGNSCYQLNRL
                     FCDFQEADNYCHAQRGRLAHTWNPKLRGFLKSFLNEETVWWVRGNLTLPGSHPGINQT
                     GGDDVLRNQKPGECPSVVTHSNAVFSRWNLCIEKHHFICQAAAFPPQGASIWRNEFGP
                     GPLLPMKRRGAETERHMIPGNGPPLAMCHQPAPPELFETLCFPIDPASSAPPKATHRM
                     TITSLTGRPQVTSDTLASSSPPQGTSDTPASSSPPQVTSATSASSSPPQGTSDTPASS
                     SPPQVTSATSASSSPPQGTSDTPASSSPPQVTSATSASSSPPQGTSDTPASSSPPQVT
                     SATSASSSPPQGTSDTPASSSPPQGTLDTPSSSSPPQGTSDTPASSSPPQGTSETPAS
                     NSPPQGTSETPGFSSPPQVTTATLVSSSPPQVTSETPASSSPTQVTSETPASSSPTQV
                     TSDTPASNSPPQGTSDTPGFSSPTQVTTATLVSSSPPQVTSDTPASSSPPQVTSDTPA
                     SSSPPQVTSETPASSSPPQVTSDTSASISPPQVISDTPASSSPPQVTSETPASSSPTN
                     MTSDTPASSSPTNMTSDTPASSSPTNMTSDTPASSSPPWPVITEVTRPESTIPAGRSL
                     ANITSKAQEDSPLGVISTHPQMSFQSSTSQALDETAGERVPTIPDFQAHSEFQKACAI
                     LQRLRDFLPTSPTSAQVSVANLLIDLSEQLLVLPFQKNNSWSSQTPAVSCPFQPLGRL
                     TTTEKSSHQMAQQDMEQHPMDGAHNAFGISAGGSEIQSDIQLRSEFEVEDMLETSLMA
                     LGEIHRAFCQQSLCPQSAVTLASPSATLMLSSQNVSTLPLSTYTLGEPAPLTLGFPSA
                     EALKELLNKHPGVNLQVTGLAFNPFKTLDDKNIVGSIGNVQLSSAYQSIRVHDLIEDI
                     EIMLWRNASMETQPTSLNTSTDHFTISVNITSLEKTLIVTIEPESPLLMTLHLGFQDQ
                     LAHTHFYLNISLPRDQVWQKDEEYTWVLTPENLWYGTGTYYIMAVENKSTEAAQHTPV
                     LVSVVTAVTQCYFWDRYNRTWKSDGCQVGPKSTILKTQCLCDHLTFFSSDFFIVPRTV
                     DVENTIKLLLHVTNNPVGVSLLSSLLGFYILLAMWASRKDREDMQKVKVTVLADNDPS
                     SASHYLIQVYTGYRRRAATTAKVVITLYGSEGHSEPHHLCDPEKTVFERGALDVFLLS
                     TGSWLGDLHGLRLWHDNSGDSPSWYVSQVIVSDMTTRKKWHFQCNCWLAVDLGNCERD
                     RVFTPASRSELSSFRHLFSSTIVEKFTQDYLWLSVATRHPWNQFTRVQRLSCCMALLL
                     CDMVINIMFWKMGGTTAKRGTEQLGPLAVTLSELLVSIQTSIILFPIHLIFGRLFQLI
                     HPPEALPQLPFIQAAWPPALVCESPSLTQVVKELKETVGFLLRRNTQLLSECEPSSCS
                     SCDINKLAKLLSGLIYCHLEDEGCHQQTESHWEDAVSENHYHFCRYLLQLLRRLKAHL
                     EALGATQDHQSCDFSEAVSQLQNLQELLETQTLRRGPGPCRHSTSFPILSPGEGKKPM
                     SFCLFRWLKCSCWLLLGVISLASAFFITLYSLELDKDQATSWVISMMLSVLQDIFISQ
                     PIKVIFLTLLFSLMANHMPWLNKDKEQHARRIVALWAKCPWSAPGLRDKNNPIYTAPA
                     MNNLAKPTRKAWKKQLSKLTGGTLVQILFLTLLMTTVYSAKDSSRFFLHRAIWKRFSH
                     RFSEIKTVEDFYPWANGTLLPNLYGDYRGFITDGNSFLLGNVLIRQTRIPNDIFFPGS
                     LHKQMKSPPQHQEDRENYGAGWVPPDTNITKVDSIWHYQNQESLGGYPIQGELATYSG
                     GGYVVRLGRNHSAATRVLQHLEQRRWLDHCTKALFVEFTVFNANVNLLCAVTLILESS
                     GVGTFLTSLQLDSLTSLQSSERGFAWIVSQVVYYLLVCYYAFIQGCRLKRQRLAFFTR
                     KRNLLDTSIVLISFSILGLSMQSLSLLHKKMQQYHCDRDRFISFYEALRVNSAVTHLR
                     GFLLLFATVRVWDLLRHHAQLQVINKTLSKAWDEVLGFILIIVVLLSSYAMTFNLLFG
                     WSISDYQSFFRSIVTVVGLLMGTSKHKEVIALYPILGSLLVLSSIILMGLVIINLFVS
                     AILIAFGKERKACEVSNQTGKCSDASNTANLQSSPSWWEDPNHKIIFIATSCHFATLM
                     NHNINMFSDGRRRPR"
ORIGIN      
        1 cctatttaaa agcccaggca gctgccaagc ctccgtacat cttctctctt ctcactcgag
       61 cctccgtaca tctctcttct cactcgagcc tccgtacatc ttctctcttc tcactcggca
      121 cagagagaaa aatgctcttg cagaggcggt cctggctctg gctgtacatt agaatcggtg
      181 tcattctggg tgatattttg ggacgtaaac caagcatccg ggagcaacat gggggaaaca
      241 gctgctatca gcttaacaga cttttctgtg acttccagga agcagataac tactgccacg
      301 cccagagagg acgcctagcc cacacgtgga accccaagct tcggggtttc ctaaaaagct
      361 tcctgaatga agaaacagtg tggtgggtca ggggaaacct gacgctgccc ggatcgcatc
      421 cagggataaa tcagacagga ggtgatgacg tcttaaggaa ccaaaagcct ggcgagtgcc
      481 cttccgtggt cacacactct aatgctgtct tctcaagatg gaacctgtgc atagagaagc
      541 atcatttcat ttgccaggct gccgcctttc cccctcaagg tgcaagcatt tggagaaatg
      601 agtttggtcc tggtcctctg ttacccatga aaagaagagg agctgagaca gagagacata
      661 tgatcccagg aaatggcccc ccgttagcca tgtgtcacca acccgctcct cctgagcttt
      721 ttgagacatt gtgctttccc attgacccag cttcttcagc acctccaaaa gccacacaca
      781 ggatgacaat cacatcccta actggaaggc cacaggtgac atcagacaca cttgcatcca
      841 gcagcccacc acaggggaca tcagacacac ctgcatccag cagcccacca caggtgacat
      901 cagccacatc tgcatctagc agcccaccac aggggacatc agacacacct gcatccagca
      961 gcccaccaca ggtgacatca gccacatctg catctagcag cccaccacag gggacatcag
     1021 acacacctgc atccagcagc ccaccacagg tgacatcagc cacatctgca tctagcagcc
     1081 caccacaggg gacatcagac acacctgcat ccagcagccc accacaggtg acatcagcca
     1141 catctgcatc tagcagccca ccacagggga catcagacac acctgcatcc agcagcccac
     1201 cacaggggac attagacaca ccttcatcta gcagcccacc acaggggaca tcagacacac
     1261 ctgcatccag cagcccacca caggggacat cagagacacc tgcatccaac agcccaccac
     1321 aggggacatc agagacacct ggattcagca gcccaccaca ggtgacaaca gccacacttg
     1381 tatccagcag cccaccacag gtgacatcag agacacctgc atccagcagc ccaacacagg
     1441 tgacatcaga gacacctgca tccagcagcc caacacaggt gacatcagac acacctgcat
     1501 ccaatagccc accacagggg acatcagaca cacctggatt cagcagccca acacaggtga
     1561 caacagccac acttgtatcc agcagcccac cacaggtgac atcagacaca cctgcatcca
     1621 gcagcccacc acaggtgaca tcagacacac ctgcatccag cagcccacca caggtgacat
     1681 cagagacacc tgcatccagc agcccaccac aggtgacatc agacacatct gcatccatca
     1741 gcccaccaca ggtaatatca gacacacctg catccagcag cccaccacag gtgacatcag
     1801 agacacctgc atccagcagc ccaacaaaca tgacatcaga cacacctgca tccagcagcc
     1861 caacaaacat gacatcagac acacctgcat ccagcagccc aacaaacatg acatcagaca
     1921 cacctgcatc cagcagccca ccatggcctg ttataacaga ggtcaccagg cctgaatcca
     1981 caatacctgc tggaagatct ttggcaaaca tcacttcaaa ggcacaggaa gactctcccc
     2041 tgggagtcat ctctacccat ccacagatgt catttcagag ttcaaccagt caggccttgg
     2101 atgagacagc aggggaacgg gtcccaacaa ttcctgattt ccaagcccac agtgaattcc
     2161 agaaagcttg tgccatcctc cagagactga gagacttcct gccgacttct cccacatcag
     2221 ctcaggtcag tgtggccaat ttactcattg acctgagtga gcagttgctg gtgctcccgt
     2281 ttcagaagaa caacagttgg agctctcaaa ctccagcagt cagctgcccc ttccagcctc
     2341 ttggacgtct aacaacaacg gaaaaaagca gtcatcagat ggctcagcaa gacatggaac
     2401 agcaccccat ggacggagca cacaatgcat ttgggatcag tgcaggggga tcggaaattc
     2461 aaagtgacat ccagctacgg agtgagtttg aggttgaaga catgctggag acatccctga
     2521 tggccctggg ggagatccac agagcatttt gccagcagag tctgtgccct cagtcagcag
     2581 tgaccctggc ctctccctct gctactctga tgttgagcag ccaaaatgtg tcaacgttgc
     2641 ccctgagcac ctacactttg ggtgagcctg cacccttgac tttgggcttc ccgtcagcag
     2701 aagctctgaa ggagctcttg aacaaacacc caggcgtgaa ccttcaagtg acaggtctgg
     2761 ctttcaaccc ttttaagact ttggatgaca agaacattgt tggaagcatt ggaaatgtgc
     2821 agctgagctc tgcttatcag tcgatcagag tccacgactt aatagaagat attgagatca
     2881 tgctctggag aaatgccagc atggagaccc agcccaccag cctcaacaca agtacagacc
     2941 atttcacaat ctctgtgaac atcacttcct tggagaagac cctcattgtg accatcgagc
     3001 ctgaaagtcc cctcctaatg acgctccact tgggcttcca ggaccagctg gcccacactc
     3061 acttctatct caacatcagc ctgccaaggg accaagtgtg gcagaaagat gaggagtaca
     3121 cgtgggtgct gacaccagag aacctgtggt acgggactgg cacctactac ataatggctg
     3181 tggagaataa aagtacagag gcggcacagc acacacccgt cctggtctca gtggtcacag
     3241 ctgtcaccca gtgctatttc tgggaccgat acaataggac atggaagagc gatggatgcc
     3301 aagtggggcc gaagagcacc attttaaaga cacagtgtct ctgtgaccac ctgaccttct
     3361 tcagcagcga cttcttcatc gtgccgagga cggtggatgt agaaaacacc atcaaactgc
     3421 ttcttcatgt gaccaacaac cctgtcgggg tgtcattgct gtccagcctc ctaggattct
     3481 atatcctctt agccatgtgg gcttccagaa aggatcgaga agatatgcag aaggtgaagg
     3541 taacagtcct ggctgacaat gaccccagct ctgcatccca ctaccttatc caggtctaca
     3601 ctggctatcg gaggagggct gctaccaccg ccaaggtcgt tatcactctc tatggctcag
     3661 aggggcacag tgagccccac cacctttgtg accctgagaa gacagttttt gagcgtggag
     3721 cactggatgt tttccttctt tccaccggat cctggctggg ggacctgcat ggccttcggc
     3781 tgtggcatga caattctggc gacagccctt cttggtatgt aagccaggtg atcgtcagtg
     3841 acatgaccac gaggaagaaa tggcatttcc agtgcaattg ttggctggcc gtggacttgg
     3901 gcaactgtga gcgtgacagg gtgttcacac cagcctccag aagcgagctc tcttccttca
     3961 gacacctgtt ctcctccaca atcgtagaaa agttcaccca ggattatctg tggctctcag
     4021 ttgcaactcg acatccctgg aaccagttta cacgagtcca gaggctctcc tgctgcatgg
     4081 cactactgct ctgtgacatg gtcatcaata ttatgttctg gaagatgggt ggcaccactg
     4141 ccaagagggg caccgaacaa ctaggtccac ttgctgtgac cttgtcggag ctgctcgtca
     4201 gcatccagac ctccatcatc ctcttcccca tccacctcat ctttgggcgg ctcttccagt
     4261 tgattcaccc accagaagct ctgccccagc ttcctttcat ccaggctgcc tggccccctg
     4321 ctcttgtttg tgagtccccc tctcttacac aggtggtcaa ggaattaaag gaaactgtgg
     4381 gattcctgct caggagaaat acacagctgc tctcggagtg tgagccgtct tcgtgcagtt
     4441 cttgtgacat taacaagctg gcgaagcttt tatccggcct catttactgt cacttagaag
     4501 acgaaggctg tcaccagcag acagaatccc actgggaaga cgcagtgtct gaaaaccatt
     4561 accatttctg ccgctacctt ctccaacttc tgcggagact gaaagcgcat ttagaggctc
     4621 ttggtgctac ccaggatcac cagtcttgtg atttctcaga agcagtcagc caacttcaaa
     4681 acctccagga actcctggag acacagactc tccgcagagg gccagggcca tgcaggcatt
     4741 ccaccagttt ccccatcctc agcccaggag aagggaagaa gcccatgtca ttttgcctgt
     4801 tcagatggtt gaagtgcagc tgctggctcc ttcttggtgt catcagcctg gcctcggcct
     4861 tttttataac gctctatagc ttggagttgg acaaagacca agccaccagc tgggttattt
     4921 caatgatgct gtcggtacta caagacatct ttatcagcca gccgataaag gtcatcttcc
     4981 tgacattgtt gttctccctg atggcaaacc acatgccgtg gcttaacaaa gacaaggaac
     5041 aacacgcccg gagaatcgta gcactttggg caaagtgtcc ttggtcggca cctggcttga
     5101 gagacaagaa caatcccatc tacactgccc cagcaatgaa caacctagcc aagcctacaa
     5161 ggaaggcctg gaagaagcag ctctccaagc tgacgggtgg tactctggtg caaatcctct
     5221 tcctgaccct gctgatgact accgtctatt ctgcaaagga ctctagtcga tttttcctcc
     5281 atcgagctat ctggaagagg ttttctcacc gtttctcaga aatcaaaact gtagaggatt
     5341 tctacccctg ggccaacggc accctccttc ctaacctata tggggattac agaggattta
     5401 ttactgacgg gaactccttt cttctgggca atgttttgat ccgccagact cgcattccta
     5461 atgacatatt cttcccagga tctctccaca agcaaatgaa gtcgcctccc caacatcagg
     5521 aggacagaga gaactatggg gctggctggg tcccccctga cacaaacatc acaaaagtag
     5581 acagtatttg gcattatcag aatcaggagt cgctgggagg ctatcccatc caaggggagc
     5641 tagccactta ctcaggagga ggctatgttg tgaggcttgg aagaaaccac agtgcggcaa
     5701 ccagggttct gcagcatctg gaacagaggc gctggctgga ccactgcaca aaagccctct
     5761 ttgtagaatt cacggtcttc aatgctaatg tgaatctgct ctgtgcggtg accctcatct
     5821 tggaatccag tggtgtgggg actttcctca cctccctgca actggacagt ttaacttccc
     5881 ttcagtcatc agagaggggc ttcgcctgga tcgtctcaca ggtcgtctac taccttctcg
     5941 tctgttacta tgccttcatc cagggctgtc ggctgaagcg gcagaggctg gcgttcttca
     6001 ctaggaaaag gaacctcctg gacacaagca tcgtcctcat tagcttcagc atcctgggcc
     6061 tcagcatgca gagcctctct ctacttcaca aaaagatgca gcagtaccac tgtgaccggg
     6121 acaggttcat cagtttctac gaggcactga gagtgaactc tgcagtcacc cacctcaggg
     6181 gcttcctgct tctcttcgca actgtgcggg tctgggacct actgcgacat catgcccagt
     6241 tacaggtcat caacaagaca ctgtccaaag cctgggacga ggtgctgggc tttatactga
     6301 tcatcgtggt cctgttaagc agctatgcca tgactttcaa cctgctgttt ggatggagca
     6361 tctctgacta ccagagcttc ttcagatcta tagtgactgt tgttggcctc ttgatgggaa
     6421 cttcaaagca caaggaggtt attgctctat acccaatcct gggctccctt ttggttctca
     6481 gtagcatcat cttgatggga cttgtgatca ttaatctttt tgtttctgcc attctcattg
     6541 cctttgggaa agaaaggaag gcctgtgagg taagtaacca aactggaaag tgtagtgacg
     6601 cttccaacac tgcgaacctt caatccagtc cctcatggtg ggaggacccc aaccataaaa
     6661 ttatcttcat cgctacttcc tgtcattttg ctactcttat gaatcataat ataaatatgt
     6721 tttctgatgg tcgtaggcga ccccggtgaa tgagttattt gacacccacc taataggggt
     6781 cgcaacccac aggttgagaa atgctgcttt aagcaaacag gcatggggac ggagcacagg
     6841 gtccccaatg gaggagctag agaaaggacc caaggagctg aagaggtttg cagccccata
     6901 ggaggaacaa tatgaactaa ccagtacccc cagagctccc aaggactaaa ccatcaacca
     6961 aagagtacac gtggagggac ccatggctcc agctgcatat gcagcagaag atggccttgt
     7021 gggacatcag tgagaggaga ggcccttggt cttgtgaagg ctcaaagccc cactataggg
     7081 gaatgccagg acagggaagc aggtgggtta gtgagcaggg ggaggagggg tgggatgggg
     7141 gggttcagag gagaaatgaa ggggataaaa tttgcaatgt aaataaagaa aacatctaat
     7201 aaaaaaagaa aacaggcatg gccgggcagt ggtggcgcac gcctttagtc ccagcacttg
     7261 ggaggcagag gcaggcagat ttctgagttc gaggtcagcc tggtcttcag agtgagttcc
     7321 aggacagcca gggctacaaa gagaacccct gtctcgaaag aataaataaa taaataaata
     7381 aataaaattt agaaagcagg catggtggca aaataaataa ataaataaat aaataaaatt
     7441 tagaaagcag gcatggtggc acacgcctgt aaccctagca tttggaagtg gagctaggac
     7501 ttaagagctc aaggccaacc tgggttacaa aataagaccc cactacacta caaactgaca
     7561 cagtgcacag gatcagcaca ttctctttgg tagtctcaac tacttttcta cgaaaaaata
     7621 aaaatataaa gttgccaaga cattatattc tgtaaccata agtaaacacc cggtcttcaa
     7681 ccattcagta gatatcccca acatctgaca ataagccatt aaagactttg tatctttact
     7741 atctactatg tttgtggggt tgtttggagg ggtatccttg gtactgtccc ctacaatttc
     7801 cattcactta ctcttttttg tcttcaacta ctcagaaaga agctacactg acagatatgt
     7861 tactacaaaa gctctcaagt ctgttaggaa tccgcctgca ccagaatcca tctgaggaac
     7921 acgctgacaa cactgggtat tgaccttagt ggcttttttt ggcttttgga aacagggttt
     7981 ctctgtgtag ccctgggtgt cctggaactc actctgtaga ccaggctggc tctgaactca
     8041 gaaatctgcc tgcctctgcc tcccgagtgc tgggattaaa ggtgtgcacc accacgcccc
     8101 cggcgacctt ggtgtcttaa gatgaactct cattgctttc atcactgccc agcatagctt
     8161 acctttcact ctattatcac actttgtgtt agtggagaat caaagtccac ttgtctccat
     8221 attcttgctg gtgggtatca gcagagtatt aaggatgata ccctaagaac acagcaccac
     8281 tacactgcca accaacaggt aacagaatgc caccactcat gcccaaaggg tgagcacacc
     8341 tgcagcttac taaatggagc agcagagcaa attcattgat gccatctgac ctccaatcaa
     8401 aggatggaaa tgagctgcca acagcccctg acacctgcag tggtgagagg aaagtgaagg
     8461 ctggatctgc cttgtacact aacgtgggtc acctgggtaa ctattgtcca ctaaaatcca
     8521 aattcactca tttgaccaac actagagaaa gcaggacatg ggatctttat tagcagctag
     8581 agctataaga cacaaataaa tcaaaaacat tgacactgaa gttgctggaa acaggtatgt
     8641 acagaaatac tacaggtaag caaaaatctc atcttccaat gccaaagcta acctcttggg
     8701 gaaggagagc cttggctagg ggcaaagcag cacagaagtt accataataa agaggttcat
     8761 ccacccagga aagcagcaga ctacagcgac atggcactaa aacttaagat gccagtttgt
     8821 aaagagtccc ttaatcataa aagttttcca atgaaaacaa gtacccctcc tctcctgcag
     8881 gcttccagat ctctacccaa gagacttgag tacttctatt aaggcaactg gaagcccacg
     8941 ctagcttagg taacgacctg tacttccttc ctaacatgct atggggaaaa gcaaatttcc
     9001 acagtgctgt tctttcctaa aaa
//
