LOCUS       XM_036157131            8001 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus polycystic kidney disease 1 like 1
            (Pkd1l1), mRNA.
ACCESSION   XM_036157131
VERSION     XM_036157131.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..8001
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..8001
                     /gene="Pkd1l1"
                     /note="polycystic kidney disease 1 like 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 long SRA reads, 2 Proteins, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:171395"
                     /db_xref="MGI:MGI:2156538"
     CDS             1..7656
                     /gene="Pkd1l1"
                     /codon_start=1
                     /product="polycystin-1-like protein 1"
                     /protein_id="XP_036013024.1"
                     /db_xref="GeneID:171395"
                     /db_xref="MGI:MGI:2156538"
                     /translation="MLLLSFSNPPPGISHTCNLSASWYHPESSSPLTQHPPRATLVTQ
                     PENVEHFAICCFPETDAQALPALGIRVHVASGTALCLLLDFGDNCGAQMRLCTLAGAT
                     TVTGYHQYRKEGVYELKAVVHDFHRAEELGPYYVDISHGNVSVFMNSSSIHDSEALSF
                     ADSLPQQRGTVVVHCFSSISSYNVSFISQTQVASGQAWCGVTVGYKMQSVSVYTNGTV
                     FAANTNITFVAITEETIPLEFAWYFGENPPVMTTSRSIRRRLSVPQWYRVKVKATSRI
                     GSVVSEPHLIRVQKRIMANRLVSTASALVNANVSFECRLNFGTDVAYLWNFGDDTIEL
                     GSSSSSHVYSREGEFTVEVLAFNNVSSTTLRKQLFIVREPCQPPPVKNMGPAKVQIWR
                     SQPLRLGVTFEAAILCNISQGLSYTWSFVSAEMTTVTLPTAVNTRRQTIMLPSYTLEC
                     GNYTAIAKVQIKGSMVYSNYCVGVEVRARAPVSVISEGTHIFISTATSTFIILRGAQS
                     YDPDNPGAALRYHWTCTAASSPRWPCFDNSTSYQVDTQAPAISFPAKWLSECCDQFLV
                     TLTVSSRGQNSSQALMFLSTRPDLAFRFVHISWVNFRDISVNWNEEVSLRAVCEDCGD
                     VPDLTYSWDLFLVNATEKSAVEVPFCSTVGLLGALALGTSLKSSKSDLPSNLRAPLTP
                     HSPEPSPTPLGWTALSNLGSISAESTAGGHHVPASGAVAGSGEPMEEYSSLSSLAEEA
                     LMTNSSEGSWPSPSSSTDFDDFEAYYSDIQEAVLSLGRQPGTSTNFQEAGPSLSAEES
                     ASYGDNLLGPFLHTGRAKPTLMIDWPKALVSQAAFHGYTTSGIMGPAVTIKPFSLSSG
                     KTYVLQASVASKHVLLGKAQLYLTVNQAPQDMSCQVRPHHGMEAYTIFSVFCMSGKPD
                     FHYEFRYRIGNTSSHTLYRGQDTQHYFLLPAGDSSDNYKVIVSTEITDGHGSKVQPCT
                     VAVTVLPRYHGNDCCDKELYNSTLESLSTLRLAGSYMETRNYITMITGILSRLYVESR
                     NTSSCGQWSQIQDVLISSACKVPYTDQEGMMDSIHILRDLISFPNKLSLTSAMCIFKY
                     TKMFLAQGQFSRRLLVDKKLRVEFVLLISGVWEAAKEDARDGDYLQEEGMKIISDMLL
                     ACLSDEHQIHVSTGQMEFQTLLHRSPQSSIQNLGFVQVHFPSDLASLHSTTQEATQSS
                     CYISQLMFFMKSPYLGGQVPGQVGGVMIPRLYSCESRRPILRGQLETPVTMEFGEEDY
                     LVKHKRNPAMFVLLRDEVNVHRFTGLSENSQESLQIHIKFSKPVTRPFPIILLVRFSE
                     KATPSDFLVKRVYFWDEQTVQMYVPAAPWKGANVGYLSLLDADYDRKPPNKYLAGAVN
                     YTVHFQWIQCVFWDKTEWRSEGPYPQPGSSPEKVNCSYHHLAPVSVLRRKLNATLEVS
                     SISEFQSHPHNLLPGIFSAFLLVLYGILVSKSRYVDCHEKKNPGFIFLEEDTLPGYQL
                     YAVVIDTGFRSPVRFTSKVFIVLCGENGCSETKELCCPEKPLFGRNSRHTFILSIPNQ
                     LGPLQKIRLWHDSSGSSPCWFISHVMVKELCSGQAWFFSAQCWLAVSKLGGHVLREFF
                     CLSHGLGFWKLFYSKFTEYLEDFHIWLSLYSQPPSRSYLHTQRLAVSFCLLCVYSCLT
                     ALVTVRDHQQRPLDVGPTAITLEPFCMALLCTLLACPVAQLLSLLFRCSKEARGDMQA
                     STQWPLRGVKTETPQGHDSSGRPDSRQPSPHPTSDLLPWNDQAWRIAASSSAVVCSPF
                     PMEACSHKHHDLREKSHYSPPSSQAPGSGFEELGSQKSRVCLLWSSSVAWAISGSASL
                     ACGLGTGFLGYWFVPAQCMWWLYLLLLSLVCCAFITQPLMICLAALVFAWKRKHDSKF
                     FTESLQDATKGLDLELEEHSRTRVPLSPISYSPDTAEEAERVLATRQRERHLRWAQTP
                     SKAKLRVTGERLRRESIMQAALRDMTTHSIMLLLLLFIAYGRFCPGEISLNHAIRKAF
                     TRKANHSLGDLSSTEDWWDWTLSTLLDELYPERTSARAWGAQPGALGGQCHLIGPPVV
                     KLLKISAGTACTPPRPFSELVEDVLPMHSNDLDLENQNVSPGGPETCGVKKESYMHSL
                     GKTRHEAHAALTALRASKWIDHSTRAMSVHFTLYNPPTQLFTSVILGTECLPSGGLVP
                     SFLVESFRIFYSDSALKYLLMLSELLFLVLNVIHLCFQLWGMTTKGILSYWRKPRHWL
                     ELSMVGVAIAYYAASGHLTTLAVNITDQFHKGLYQRLVDIGLMVSWHQRARCLQGILL
                     FLWMLKYVHLLSSLSTMTPFSAVTCFPLFRVLLVGALLLAAHYHSRWFLLFTGTLSHG
                     TSAEAFPGLLLQFPGRSKKDSWHNCLKSDHGVMRCYYGTLFLLLATLGFRMLRATFLT
                     VFQNRKSSHRKPLVTLKDIAVYTWHKVLTLLGLETTLEETEVATDHIYYLDEFSSLLD
                     ELLMKIDGLSDSLELSILENQWKRALESRAGDSPPVGSSEYQATGVPLEARREHYTRI
                     PWNPTYRHLSTVR"
ORIGIN      
        1 atgctgcttc tgagcttctc caaccctcct cctggcattt ctcacacctg caacctctct
       61 gcatcctggt atcatcctga gagttccagt cctctcactc agcatcctcc cagggccacc
      121 ttggtgacac agcctgaaaa tgttgagcac tttgccatct gctgcttccc agaaacagat
      181 gctcaggcac ttccagctct gggaatccgt gttcacgtgg cttccggaac agctctttgt
      241 ctgctgctgg actttgggga caattgtgga gctcagatga gactgtgtac attggcaggt
      301 gcaactactg tgactggcta ccatcagtac aggaaagaag gagtctatga gctcaaggct
      361 gttgtccatg actttcatag agccgaggaa ctggggccct attatgtgga cattagccat
      421 gggaatgtgt ctgtcttcat gaattccagc tctatccatg atagcgaagc tctttccttt
      481 gctgactccc tcccacagca gagaggcaca gtcgtggtgc attgtttttc atccatttct
      541 tcatacaatg tgtcctttat ttctcagacc caagtggcca gcggccaggc ctggtgtggt
      601 gtgactgttg ggtataagat gcaatccgtg tctgtctata ccaatggaac tgtgtttgct
      661 gctaacacaa acatcacatt tgtggctatt accgaggaaa ctatacccct ggagttcgct
      721 tggtatttcg gagagaaccc accagtgatg acaacttcca gaagcattag aagaaggctg
      781 agcgtccctc agtggtaccg tgtgaaggtc aaggccacca gcaggatcgg cagtgtggtc
      841 tctgaacccc acctcatcag ggtgcagaag agaatcatgg ccaatcgact tgtgtccact
      901 gcctcagccc tggtaaatgc caatgtgtcc tttgagtgca ggctcaactt tggcactgat
      961 gtagcctacc tttggaactt tggagatgac accattgagt tgggcagcag ctcctccagc
     1021 catgtctaca gcagggaggg agagtttaca gttgaagtcc ttgccttcaa taatgtcagc
     1081 tccactaccc taagaaagca gcttttcatc gtgcgggagc cttgccaacc acccccagtg
     1141 aagaacatgg ggcctgcgaa ggtgcagata tggaggtctc agcccctgag actaggagtg
     1201 acatttgaag ctgccatcct ctgtaacatt tcccaagggc tttcctacac ctggagcttt
     1261 gtgagtgctg agatgaccac tgttaccctc cctactgctg tcaacacccg cagacagacc
     1321 atcatgctcc caagctacac actggaatgt gggaactaca ccgccatcgc caaggttcag
     1381 atcaagggaa gcatggtgta tagcaactac tgtgttggtg tagaagttcg agctagggcg
     1441 cctgtcagcg tcatctctga aggcacacac atcttcatct ccacggccac ctcaaccttc
     1501 atcatcctca gaggggccca gtcctatgac cctgacaacc caggggctgc tctcaggtat
     1561 cactggactt gcacagcggc cagctcacca aggtggccct gctttgataa ctctacttca
     1621 taccaagtgg acacgcaagc tcctgccatt tccttcccag caaaatggct cagtgaatgc
     1681 tgtgaccagt tccttgtgac actgacggtc tctagcaggg gacagaactc atcacaggcc
     1741 ttgatgttcc tgtctacccg tcctgacttg gccttcagat tcgtccacat ctcatgggtc
     1801 aactttagag acatctctgt gaactggaat gaagaagtgt ctctccgggc tgtgtgtgaa
     1861 gactgtggag atgtcccaga cctcacgtat tcctgggacc tcttcctagt caatgcaaca
     1921 gagaagagtg cagtggaagt ccccttctgt agtactgtgg ggctgctagg tgccttggca
     1981 cttgggacca gtctgaagtc ctctaagtct gatctgccat caaatctgag agcaccactg
     2041 acaccacact caccggagcc ttcacccacg cctctgggct ggacagctct ttccaacctg
     2101 ggaagcattt ctgctgagtc cacagctggt ggccaccacg ttcctgcttc aggagctgtg
     2161 gcaggctcag gggagcctat ggaggagtat agctcactga gttccctggc tgaggaagcc
     2221 ctgatgacga acagctctga gggaagctgg ccctccccca gctcttccac tgactttgat
     2281 gattttgaag cctattatag cgacatccaa gaagcagtgc tatccctagg aagacaacca
     2341 gggaccagta caaacttcca ggaagcagga ccaagcctga gtgctgagga gagtgccagt
     2401 tatggggaca acctgctggg ccctttcctc cacacaggta gagcaaagcc aactctcatg
     2461 atcgactggc ccaaggccct ggtcagccaa gctgccttcc atggctacac cacatcaggt
     2521 atcatgggac cagctgtgac aataaaacca ttctcactga gcagtggcaa gacatatgtc
     2581 ttacaagctt ctgtagcttc aaagcatgtc ttactgggca aggctcagct ctacttaacg
     2641 gtcaaccaag ctccgcagga catgtcttgt caggtgcgac cccaccatgg tatggaggca
     2701 tataccatct tcagtgtctt ctgcatgtca gggaaaccgg actttcatta tgaatttcgt
     2761 taccggatag gaaacacttc ctcacatacc ctgtaccgtg gtcaagacac ccagcattat
     2821 tttttattgc cagctggtga ttcttcggac aattacaaag tcattgtttc aactgagatc
     2881 acagatggcc acggctccaa ggtgcagcca tgcactgtgg cggtgactgt gctaccccgt
     2941 taccatggaa atgactgctg tgacaaggaa ctatataact ccactctgga aagcctgtct
     3001 actctccggc tggcaggaag ttacatggaa accaggaact acattaccat gatcactggg
     3061 atcctgagcc gcttgtatgt ggagagcaga aacacttctt cgtgtggtca gtggtcacaa
     3121 atacaggatg tattaatttc ttcagcatgc aaagtacctt atacagatca ggaaggaatg
     3181 atggattcta ttcatatatt gagagacctc ataagcttcc ctaataagtt gagcttgacg
     3241 agtgccatgt gcatcttcaa atacaccaag atgttccttg ctcaaggcca gttctccagg
     3301 aggttgctag tcgacaaaaa actaagagtt gaatttgtcc ttctcatctc tggagtctgg
     3361 gaagctgcca aagaggatgc gagggatggg gactatctgc aggaagaagg catgaagatc
     3421 atctctgaca tgttactagc ctgtctctca gacgagcatc agattcacgt aagcactggg
     3481 cagatggagt tccagaccct tctccatcgt agccctcaga gctctatcca gaacctaggc
     3541 ttcgtccagg tacatttccc cagtgacctg gcctccttgc acagtactac tcaagaggca
     3601 acacaaagct catgctatat cagccagctc atgttcttca tgaagagtcc ttatctaggg
     3661 ggacaagttc ctgggcaggt gggtggtgtc atgatcccta ggctctatag ctgcgagagt
     3721 agaagaccta tcctcagagg acaactggag acacctgtga ctatggagtt tggggaagaa
     3781 gactacctgg taaagcacaa gagaaatcca gccatgtttg tgttgcttcg ggatgaggtg
     3841 aatgtccacc ggtttactgg gctttcagaa aactcccagg aatctttaca gatacacatc
     3901 aaattctcta agcccgttac aagacccttt cccatcatac tgttagtaag gttctctgag
     3961 aaagccacgc cttctgattt tcttgtgaag cgggtctact tctgggatga gcagactgta
     4021 caaatgtatg tacctgctgc tccatggaaa ggagccaatg tgggatattt atcgctatta
     4081 gatgctgact atgacaggaa acctccaaac aaatatcttg ctggggctgt aaactataca
     4141 gtgcatttcc agtggatcca atgtgtgttc tgggacaaga cagagtggcg atctgaaggt
     4201 ccctatccac agccaggatc gtctcctgaa aaagtcaact gcagctacca tcaccttgca
     4261 cctgtctctg tcctaagaag aaagctgaat gccactcttg aagtgagcag catttctgag
     4321 tttcagagtc acccacacaa cttgctcccc ggtattttca gtgcatttct cttggttctt
     4381 tatggaattt tggtgagtaa aagcagatat gtagactgtc atgagaaaaa gaatccaggt
     4441 tttatttttc tggaagaaga tacactgcct ggctaccagc tgtatgcagt cgtcatcgac
     4501 actggcttcc ggtcaccagt cagatttacc tcaaaggttt tcattgttct atgtggtgaa
     4561 aatggatgct cagaaacgaa agaactctgt tgtccagaga agcccttatt tggaaggaat
     4621 tccaggcaca ccttcattct gagcatacct aaccaactgg gtccactcca gaagatccgc
     4681 ctctggcacg acagtagtgg atcttcccca tgctggttca tcagccacgt gatggtgaag
     4741 gagctatgct caggacaagc ctggttcttc tctgctcagt gctggctggc tgtgagcaaa
     4801 ttgggtggcc atgtattacg agaattcttc tgcctgagcc atggtctcgg tttctggaag
     4861 cttttctatt caaagttcac tgagtacctg gaggatttcc acatctggct ctcactgtac
     4921 agtcagcccc catccagaag ctacctacac acacagcggc ttgccgtgtc cttctgcctg
     4981 ctgtgtgtct actcgtgcct cactgccctg gtcactgtgc gagaccatca acagcgcccc
     5041 ctggatgtgg ggcccacagc tatcactctg gaacccttct gtatggctct actgtgcacc
     5101 ctcctggcct gtccagttgc acagcttctg tcactgctct tcaggtgcag caaggaagcc
     5161 agaggggata tgcaggcttc aacacagtgg cctctaagag gagtgaagac agagacacct
     5221 cagggccatg attccagtgg gagaccagat tcaaggcagc cctcaccaca tcccacatca
     5281 gaccttctcc cctggaatga ccaagcttgg aggatagcag ccagcagcag tgctgtggtc
     5341 tgttcaccgt tcccaatgga ggcctgcagc cataagcatc atgatctgag agagaagagc
     5401 cattactctc ctcccagttc acaagctcct ggcagtggtt ttgaagaact tgggtcccag
     5461 aagtcaaggg tctgtctgct ctggtcaagc tctgtggcct gggctatctc tggatcagct
     5521 tccctggcct gtggtttggg gacaggattc ctaggctact ggtttgtgcc agcacagtgt
     5581 atgtggtggc tatacctgct gcttctctct ctggtctgct gcgcattcat cacccagcca
     5641 ctcatgatct gcttggcagc acttgtcttt gcttggaaac ggaaacatga cagcaagttt
     5701 tttactgagt ctttacaaga tgcgaccaag ggtctggatt tggaattgga agaacattcc
     5761 agaacccgtg ttcctctttc tcctatctcc tatagtcctg acactgctga ggaggctgaa
     5821 agggtcttgg ctacccgaca acgagaacgc cacctgcgct gggctcagac accatccaag
     5881 gctaagctca gagtgaccgg ggagagactg aggagagaga gcatcatgca ggcagccctg
     5941 agagacatga ccacacacag catcatgcta ctgctgcttt tgtttatagc atatgggaga
     6001 ttctgcccag gtgaaatttc tctcaatcat gccatcagga aagcatttac aagaaaggcc
     6061 aatcactcct tgggggacct cagcagcaca gaagactggt gggactggac gctgagcaca
     6121 ctgctagatg agctgtaccc agaaagaaca tctgctagag cctggggggc tcagcctgga
     6181 gctcttggag ggcaatgcca cctaataggc cccccggtgg tcaaactgct gaagatttct
     6241 gctggcactg catgcacgcc tcccagacca ttctcagagc ttgtggaaga tgtacttcct
     6301 atgcacagca atgaccttga ccttgagaac caaaatgtgt cccctggcgg ccctgagacc
     6361 tgtggcgtga agaaagagag ctacatgcat agcctaggaa aaacaagaca tgaagcccat
     6421 gcagctctga ctgccctcag ggctagcaag tggatcgacc acagcacaag ggccatgtct
     6481 gtgcacttca ctctctacaa ccctccaaca caactcttca caagcgtgat cctgggcaca
     6541 gaatgtctcc cctcaggagg tcttgtcccc tcattcctgg tagagtcctt ccgcatcttc
     6601 tacagtgact cagccctaaa gtaccttctt atgctttctg agctgctgtt cctggtactc
     6661 aacgtgatcc acctctgttt ccagctctgg gggatgacaa ccaagggcat cctcagctac
     6721 tggagaaaac caagacactg gctggagctc tctatggttg gagtagcaat agcctactat
     6781 gcagcctctg gtcacctcac tactcttgct gtgaacatca ccgaccagtt ccacaaagga
     6841 ctttatcaga ggcttgtgga catcggcctg atggtgtcat ggcatcagag ggcgcgatgc
     6901 ctccaaggaa tcctcttgtt cctctggatg ttgaaatatg ttcatcttct cagctctcta
     6961 agcaccatga cacccttctc agcagtgacc tgttttcctc tcttcagagt cttgctggtg
     7021 ggggccctat tgctggctgc ccattaccac tcgcgctggt ttctgctctt caccgggaca
     7081 ctgtcacatg gcacctcggc agaagcattt cctgggctac tgcttcaatt tcctggaaga
     7141 agtaaaaaag actcatggca taactgtttg aagtctgacc acggagttat gcgttgttac
     7201 tatgggaccc tctttctgtt gctggctact ctgggtttca gaatgttgag agctaccttc
     7261 ctgactgttt tccaaaacag aaagtcttct cacagaaaac ctctcgtgac acttaaagac
     7321 attgctgttt acacatggca taaagtcctc acccttctgg ggctggaaac aactttggaa
     7381 gagactgaag tggctacaga ccatatttat tacctggatg aattttcaag tctcttggat
     7441 gaacttctga tgaagatcga tggtttgtct gacagcctag aactttctat cctagaaaac
     7501 caatggaaga gagcactaga gtcaagggca ggtgacagtc ctccagttgg cagttcagag
     7561 taccaagcta ctggggtacc tttggaggcc agaagagagc actatactcg gatcccctgg
     7621 aaccctactt ataggcactt gtcaacagtc agatgatggt gctgagaaat gaacctgtgt
     7681 ccttcctgtg caagggtcat aacttcctct tcctcttcaa actctgaacc acaacctgaa
     7741 cactggaaac ctgtagttca aaccatcatc ggggactatc tgtatatata accaggaact
     7801 ctgtcccagg gttaaaaaga atagatttaa atctgttaaa actaggcaaa acacagcaga
     7861 gtagttacca gacttaaagt ataagcatca ttctgttgct gtctagatat tgccactcgc
     7921 tgcttctaca tgatttaaaa cttaaaaggc tgttatgttt tattacttat tacttgtaat
     7981 tattaaattg atctgaatgc t
//
