LOCUS       NM_001384210            2139 bp    mRNA    linear   ROD 06-NOV-2024
DEFINITION  Mus musculus paired-Ig-like receptor A12 (Pira12), transcript
            variant 2, mRNA.
ACCESSION   NM_001384210 XM_006539427
VERSION     NM_001384210.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2139)
  AUTHORS   Dai,H., Lan,P., Zhao,D., Abou-Daya,K., Liu,W., Chen,W.,
            Friday,A.J., Williams,A.L., Sun,T., Chen,J., Chen,W.,
            Mortin-Toth,S., Danska,J.S., Wiebe,C., Nickerson,P., Li,T.,
            Mathews,L.R., Turnquist,H.R., Nicotra,M.L., Gingras,S.,
            Takayama,E., Kubagawa,H., Shlomchik,M.J., Oberbarnscheidt,M.H.,
            Li,X.C. and Lakkis,F.G.
  TITLE     PIRs mediate innate myeloid cell memory to nonself MHC molecules
  JOURNAL   Science 368 (6495), 1122-1127 (2020)
   PUBMED   32381589
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from AC161409.11.
            
            On Jun 8, 2020 this sequence version replaced XM_006539427.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN01164135
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-91                AC161409.11        140893-140983       c
            92-127              AC161409.11        140703-140738       c
            128-412             AC161409.11        140237-140521       c
            413-718             AC161409.11        139783-140088       c
            719-1003            AC161409.11        138344-138628       c
            1004-1312           AC161409.11        137909-138217       c
            1313-1609           AC161409.11        137385-137681       c
            1610-1912           AC161409.11        136823-137125       c
            1913-2139           AC161409.11        127043-127269       c
FEATURES             Location/Qualifiers
     source          1..2139
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 2.24 cM"
     gene            1..2139
                     /gene="Pira12"
                     /gene_synonym="Gm14548"
                     /note="paired-Ig-like receptor A12"
                     /db_xref="GeneID:100038909"
                     /db_xref="MGI:MGI:3709645"
     exon            1..91
                     /gene="Pira12"
                     /gene_synonym="Gm14548"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..2049
                     /gene="Pira12"
                     /gene_synonym="Gm14548"
                     /note="isoform 2 precursor is encoded by transcript
                     variant 2"
                     /codon_start=1
                     /product="paired-Ig-like receptor A12 isoform 2 precursor"
                     /protein_id="NP_001371139.1"
                     /db_xref="GeneID:100038909"
                     /db_xref="MGI:MGI:3709645"
                     /translation="MSCTFTARLCLGLTLSLWIPVLTGSLPKPILRVQPHSVVSRRTK
                     VTFLCEETIGANEYHLYKDGKLYKTVTKNKQKPANKAEFSLSNVDLSNAGQYRCSYNT
                     QDESSGYSDPLELVVTGDYWTPSLSAQASPVVTSGGYVTLQCESWHNNHRFILTVEGP
                     QKLSWMQDSQYNNSTRKYHALFSVGPVTPNQRWIFRCYSYDRNRPYVWSPPSESVELL
                     VSGNLQKPTIKAEPGSVITSKRAMTIWCQGNLDAEVYFLHNEKSQKTQSTQTLQQPGN
                     KGKFFIPSVTQQHAGQYRCYCYSSAGWSQPSDTLELVVTGIYEYYEPRLSVLPSPVVT
                     AGGNMTLHCASDFHYDKFILTKEDKKFTSSLDTEHISSSRQYRALFIIGPTTPTHTGT
                     FRCYGYYKNAPQLWSVPSALQQILISGLSKKPSLLTHQGHILDPGMTLTLQCYSDINY
                     DRFALHKVGGADIMQHSSQQTDTGFSVANFTLGYVSSSTGGQYRCYGAHNLSSEWSAS
                     SEPLDILITGQLPLTPSLSVQPNHTVHSGETVSLLCWSMDSVDTFILSKEGSAQQPLR
                     LKSKSHDQQSQAEFSMSAVTSHLSGTYRCYGAQDSSFYLLSSASAPVELTVSATENQD
                     HTMENLIRMGMAVLVLIVLSILATEAWRSHRQTHPVAGN"
     exon            92..127
                     /gene="Pira12"
                     /gene_synonym="Gm14548"
                     /inference="alignment:Splign:2.1.0"
     exon            128..412
                     /gene="Pira12"
                     /gene_synonym="Gm14548"
                     /inference="alignment:Splign:2.1.0"
     exon            413..718
                     /gene="Pira12"
                     /gene_synonym="Gm14548"
                     /inference="alignment:Splign:2.1.0"
     exon            719..1003
                     /gene="Pira12"
                     /gene_synonym="Gm14548"
                     /inference="alignment:Splign:2.1.0"
     exon            1004..1312
                     /gene="Pira12"
                     /gene_synonym="Gm14548"
                     /inference="alignment:Splign:2.1.0"
     exon            1313..1609
                     /gene="Pira12"
                     /gene_synonym="Gm14548"
                     /inference="alignment:Splign:2.1.0"
     exon            1610..1912
                     /gene="Pira12"
                     /gene_synonym="Gm14548"
                     /inference="alignment:Splign:2.1.0"
     exon            1913..2139
                     /gene="Pira12"
                     /gene_synonym="Gm14548"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaaaggctc tgtagctctt ccctcgagca cagttgcagc cactgagggg agatgccatg
       61 tcctgcacct tcacagcccg gctctgcctt ggactgactc tgagcctctg gatcccagtg
      121 ctgacagggt ccctccctaa gcctatcctc agagtacagc cacactctgt ggtctccaga
      181 aggactaagg tgaccttctt gtgtgaggag acaattggag ccaatgagta ccacctctat
      241 aaagatggaa agctatataa aaccgtaaca aagaacaaac agaagccagc aaacaaggct
      301 gaattctcac tctcaaatgt agacctgagt aatgcaggtc aatatcgatg ttcctacaac
      361 acccaggatg aatcatcagg ctacagtgac cccctggagc tggtggtgac aggagactac
      421 tggacaccca gcctttcagc ccaggccagc cctgtggtaa cttcaggagg gtatgtcacc
      481 ctccagtgtg agtcctggca caacaatcac aggttcattc tgactgtaga aggaccacag
      541 aagctctcat ggatgcaaga ctcacaatat aacaactcta caaggaagta ccacgccctg
      601 ttctctgtgg gccctgtgac ccccaaccag cgatggatat tcagatgtta cagttatgac
      661 aggaacagac catatgtgtg gtcacctcca agtgaatccg tggagctcct ggtctcaggt
      721 aatctccaaa aaccaaccat caaggctgaa ccaggatctg tgatcacctc caaaagagca
      781 atgaccatct ggtgtcaggg gaacctggat gcagaagtat attttctgca taatgagaaa
      841 agccaaaaaa cacagagcac acagacccta cagcagcctg ggaacaaggg caagttcttc
      901 atcccttctg tgacacaaca acatgcaggg caatatcgct gttattgtta cagctcagct
      961 ggttggtcac agcccagtga caccctggag ctggtggtga caggaatcta tgaatactat
     1021 gaacccaggc tgtcagtact gcccagccct gtggtgacag caggagggaa catgacactc
     1081 cactgtgcct cagactttca ctacgataaa ttcattctca ccaaggaaga taagaaattc
     1141 accagctcac tggacacaga gcatatatct tctagtagac agtaccgagc cctgtttatt
     1201 ataggaccca caaccccaac ccacacaggg acattcagat gttatggtta ctacaagaat
     1261 gccccacagc tgtggtcagt acctagtgct cttcaacaaa tactcatctc agggctgtcc
     1321 aagaagccct ctctgctgac tcaccaaggc catatcctgg accctggaat gaccctcacc
     1381 ctgcagtgtt actctgacat caactatgac agatttgctc tgcacaaggt ggggggagct
     1441 gacatcatgc agcactctag ccagcagact gacactggct tctctgtggc caacttcaca
     1501 ctgggctatg tgagtagctc cactggaggc caatacagat gctatggtgc acacaacctc
     1561 tcctctgagt ggtcagcctc cagtgagccc ctggacatcc tgatcacagg acagctccct
     1621 ctcactcctt ccctctcagt gcagcctaac cacacagtgc actcaggaga gaccgtgagc
     1681 ctgctgtgtt ggtcaatgga ctctgtggat actttcattc tgtccaagga gggatcagcc
     1741 cagcaacccc tgcgactaaa atcaaagtcc catgatcagc agtcccaggc agaattctcc
     1801 atgagtgctg tgacctccca tctctcaggc acctacaggt gctatggagc tcaagactca
     1861 tctttctacc tcttgtcatc tgccagtgcc cctgtggagc tcacagtctc agccacagag
     1921 aaccaggatc acacaatgga gaatctcatc aggatgggga tggcagtcct ggtcctcatc
     1981 gtcctttcga ttctagccac tgaggcttgg cgaagccata gacagaccca ccctgtagct
     2041 gggaactaat ctaaagagaa aagaatgcat ctttcaatgt tctacacgct gggaaataaa
     2101 gctgatgacc caaagttttc tgtcaaaagg aaaaaaaaa
//
