LOCUS       NM_028300               1268 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus PIH1 domain containing 2 (Pih1d2), mRNA.
ACCESSION   NM_028300 XM_917262
VERSION     NM_028300.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1268)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC025500.8, AK012458.1, AV281140.1 and AW488473.1.
            
            On Sep 11, 2009 this sequence version replaced NM_028300.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC039645.1, AK012458.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN00849385
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-25                AC025500.8         81604-81628
            26-1235             AK012458.1         2-1211
            1236-1251           AV281140.1         222-237
            1252-1268           AW488473.1         1-17                c
FEATURES             Location/Qualifiers
     source          1..1268
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 27.75 cM"
     gene            1..1268
                     /gene="Pih1d2"
                     /gene_synonym="2700059L22Rik"
                     /note="PIH1 domain containing 2"
                     /db_xref="GeneID:72614"
                     /db_xref="MGI:MGI:1919864"
     exon            1..278
                     /gene="Pih1d2"
                     /gene_synonym="2700059L22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            279..482
                     /gene="Pih1d2"
                     /gene_synonym="2700059L22Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             306..1253
                     /gene="Pih1d2"
                     /gene_synonym="2700059L22Rik"
                     /codon_start=1
                     /product="PIH1 domain-containing protein 2"
                     /protein_id="NP_082576.1"
                     /db_xref="CCDS:CCDS23167.1"
                     /db_xref="GeneID:72614"
                     /db_xref="MGI:MGI:1919864"
                     /translation="MTVSSKGLLTHISQFWNMLDDLAENDPERYRNFIQQELKDGKQL
                     CVNPEPQLCIQTKILKPNEKVLFINLCQWERIPAPQSATRPVPVSVGRPEDSAEASDA
                     YTIIDVAYNPGVLQAAEKDQGIKDQLIRMAMLCIEERLQFTLAHSYHLTSFRLKGSIQ
                     RMKESLMGIKTDFPDLKAMTRTENTLARIRSSTVSEPNHLPEVLLTKKQASAKGRCLI
                     EEISSSEIQVEVKKPAYELKVVKDRNEKPLKIELKVELPGIKSVSLCELSVSEVDILI
                     EVSEMYRLCLNLPESINTEMTTAKFVKNKSALIITMPLA"
     exon            483..606
                     /gene="Pih1d2"
                     /gene_synonym="2700059L22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            607..852
                     /gene="Pih1d2"
                     /gene_synonym="2700059L22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            853..1118
                     /gene="Pih1d2"
                     /gene_synonym="2700059L22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1119..1259
                     /gene="Pih1d2"
                     /gene_synonym="2700059L22Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1233..1238
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pih1d2"
                     /gene_synonym="2700059L22Rik"
                     /note="hexamer: ATTACA"
     polyA_site      1259
                     /gene="Pih1d2"
                     /gene_synonym="2700059L22Rik"
                     /note="major polyA site"
ORIGIN      
        1 ccggagactc ccacagagcg ggctcgccgg tcgccgtgga agctgacggg tgcaggaagg
       61 aaggcggcgc tctcccgaga gacaagcggg acggcctgcg gaggagccag tccggacccg
      121 gagaagagaa ccggaactgg atatagagac acagctctac tttgcgctct ccggacccag
      181 ttagatggtg taccgggact ggttaccatg gtaaccggag tcgcagtttg tcggcaaact
      241 gagagaagac gtgcgcgttt cccccacgtt tggattaagt tccaaaggcc tgtctcatca
      301 ccatcatgac ggtgtcctca aagggtcttc ttacccacat ttcccagttc tggaatatgc
      361 tcgatgattt ggctgaaaat gaccccgagc gctaccggaa cttcattcag caggagttga
      421 aagatggcaa acagctctgt gtcaacccag aacctcaact ctgcatacag accaagatcc
      481 taaaaccaaa cgaaaaagta ctttttatca acctatgtca atgggaaagg attcccgctc
      541 cgcagtcagc cactcgtcct gtgcctgtaa gtgttggcag accagaagac tccgctgagg
      601 catcagatgc ttataccatc attgatgttg cctacaatcc tggtgttctg caagcggcag
      661 aaaaagacca agggatcaaa gatcagttaa taagaatggc catgctgtgc atcgaggagc
      721 gactccagtt cacacttgca cattcctacc atttaactag ttttagactg aaaggaagca
      781 tccagagaat gaaagaaagt ctgatgggca ttaaaactga cttcccagac ctaaaagcga
      841 tgacgagaac agaaaatact cttgcgagga tcagaagcag cactgtgagt gaacctaatc
      901 accttcctga ggtgctattg acaaaaaagc aagcgtcggc caaaggacga tgtcttatag
      961 aagagatttc tagttcggaa atccaggtgg aggttaagaa acctgcgtac gaattaaagg
     1021 ttgtaaagga tcggaacgag aaacctctga aaattgagct gaaagtcgag ttacccggga
     1081 ttaagtcagt ctctctctgt gaacttagtg tttctgaggt tgatatattg attgaggtct
     1141 ctgagatgta ccgattatgc ctgaatcttc cagaatcgat taatacagaa atgactacag
     1201 caaaatttgt caaaaataaa tctgcattaa tcattacaat gcccctggca taaaaacaaa
     1261 aaaaaaaa
//
