LOCUS       XM_030253685            4631 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus phosphatidylinositol glycan anchor
            biosynthesis, class O (Pigo), transcript variant X4, mRNA.
ACCESSION   XM_030253685
VERSION     XM_030253685.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030253685.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4631
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..4631
                     /gene="Pigo"
                     /gene_synonym="PIG-O"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class O; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 60 ESTs, 199 long SRA
                     reads, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 37 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:56703"
                     /db_xref="MGI:MGI:1861452"
     CDS             1915..4359
                     /gene="Pigo"
                     /gene_synonym="PIG-O"
                     /codon_start=1
                     /product="GPI ethanolamine phosphate transferase 3 isoform
                     X2"
                     /protein_id="XP_030109545.1"
                     /db_xref="GeneID:56703"
                     /db_xref="MGI:MGI:1861452"
                     /translation="MTMNGDHGGDSELEVSAALFLYSPTALFPSVPPEEPEVIPQVSL
                     VPTLALLLGLPIPFGNTGEVMAELFSGGSDSSHPHSSALAQVSALHINAQQVSRFLHT
                     YSAATQDLQVKELHRLQTLFSKASARYQHFLRDPQEAEAALSTLTAEFQQFLRGARAL
                     CIESWARFSLVRMAGGAALLAAACLLCLLASQLAVAPGFLFRPLLLIPVAWGLTWTIL
                     YAGVSVTTGSKIDLVVLGAVAAAGSLLPFLWKAWVSRGSKRPLAPLLPVPRPVLILLL
                     IRLATFFSDSFVVAEARATPFLLGSLVFFLVAQLHWEGQLLPPKPLTMSRLGSSAPTA
                     PPRHSGAHALWLGIGLLLFTRLAGLFHRCPEETPACRSSPWLSPLASMVGGRAKNLWY
                     GACVGALVALLVVVRLWLRRYGNLKSPEPPVLFVRWGMPLMVLGTAAYWALASGAEEA
                     PPRLRALVAGASAVLPRAVMGLAALGLVLLLWRPVTVLVKAGAATSRTRTILTPFSGP
                     PTSQADLDYVVPQIYRHMQEEFQGRLERTKAQGPITVAAYQLGSVYSAAMVTALLLLA
                     FPLMLLHVERVSLVFLLLFLQSFLLLHLLAAGTPVATPGPFTVLWQAVSAWVLLATQT
                     FYSTGHQPVFSAIHWHAAFVGFPDGHGSSTWLPALLVGANTFASHLLFAVGCPLLLLW
                     PFLCERQGPKRRQPLPGSESEARVRPEEEEELQEPLMEMRLRDAPNHFNAALLQLGLK
                     YLFILGAQILACALAASILRRHLMVWKVFAPKFIFEAVGFIVSSVGLLLGIALVMRVD
                     VAVSSWFKKLVLAQQR"
ORIGIN      
        1 ggcgtgcacc accattgccc ggctagttta tgttttttgt tactgtgaaa aagtgctctt
       61 gacaagaaca tctaaaggag ctagttacca gacagtttta gttcatcacg ggagggaagt
      121 ctcagcagtg agaacttgaa gcatggggct gggaagatgg ctcagtgatt aagagcatgt
      181 actgctcttg ctgaagacca aagtttagtt cccagcactc agaccttgtg ttgaaaaaca
      241 accaaaaatg gacagtgagt ctggagagag ggctgagtgg ctaaaagcaa ttgcagcaca
      301 aagtgcattg tacaaacata catataataa aatgctcggt ggtccctggg cttttcttct
      361 ttcatgcttc tgtacacacc cagtcatcat ccccctctct tagaccttgc cctcatttat
      421 gaattactga acctcctatc aaagttttca gccccacgtt tcttgtcgaa cttccctgct
      481 ggtgccggca ggcggcgaca aatctcctgg tagggcgctc tgtcaggctt gcacacctct
      541 gtggtgccag acagcgagcc ctgccgctgc acttccgggc gcggatccag gtgagccaag
      601 gtctccctgt tacctctgtt actgtcaccc ctaggacggg tgtctcagct tactgccggg
      661 gtgcccagta tcagagggag catgtccagg tgttggccgg gttcccaccg gaggagacag
      721 agctgccggg acttctggat cccagcttag ctcaatgggc tttataccgg gcttcctggg
      781 gacgtcgttc cttcggtttt ttcttgagcc tggccgcccg gaagcggagc aagactcctc
      841 cccgtcgttt cctcggttcc cgccaggcgg cgccgtttac tcaatccagt taatccgtgt
      901 ggtttctgtc tattgccacc ctggaaatgt tgagttagtc cgaagagagc cattgaaatg
      961 gactgtcaga gaacaatcta cctaccattt ggaatagtct tcctcctaga ctgtggtttg
     1021 acagcattag atctcccggt tggatatgca caggctcccg tgctcacccc cagaacctga
     1081 atcggatgcg gaaggtgtct gtgctcctct tcttagcctg ggtctgtttt cttttctacg
     1141 ctggcattgc actcttcacc agtggcttcc ttctcactcg tctggagctc accaatcaaa
     1201 gcagctgcca agagctccca ggccctggtc ccttgccgtg gggaagtcat ggaaagcctg
     1261 gggcttgctg gatgccttcc cgcttctcca gggtggtttt ggtactgata gacgctctgc
     1321 ggtttgactt tgcccagcct cagcgctcgc atgtgcctgg ggaacctcct gtctccgtgc
     1381 cttttctggg aaaattaggt tccttgcaga ggatcctaga gagtcaaccc caccatggcc
     1441 ggctgtaccg atctcaggtg gaccccccca cgaccaccat gcagcgtcta aaggctctca
     1501 ccactggctc gctgccgact ttcattgatg ctggcagtaa ctttgccagc catgctatag
     1561 tggaagataa tgtcatccaa cagctcaaca gtgcaggaag gcgtgtagtc ttcatgggag
     1621 atgatacctg gagagacctc ttccccggag ccttttctca agctttcttc ttctcatcct
     1681 tcaatgtcag agacctgcac acagtggata acggcatctt ggaacacctc tatcctaccc
     1741 tggacggcgg ttcgtgggat gtgctgatcg ctcacttcct gggtgtggat cactgtggtc
     1801 acaagcacgg ccctcaccac cctgaaatgg ccaagaaact tagccagatg gaccagggga
     1861 ctcatagaac gcctggagaa tgacacactg ctggtggtag ccggtgacca tgggatgacc
     1921 atgaatgggg accatggagg ggacagtgag ctggaggtgt cagctgcact tttcctgtac
     1981 agccccacag ctctcttccc tagtgtccca cccgaggagc cggaggttat tcctcaggtc
     2041 agccttgtgc ccacgctggc actgctgcta ggcctgccca tcccgtttgg gaacactggg
     2101 gaagtgatgg cagagctatt ctcaggtggc agtgactcct cccatcctca ctcctctgcg
     2161 ctagcccaag tctcggctct ccacatcaat gcccagcagg tgtcccggtt tcttcatacc
     2221 tactcggctg cgactcagga tctccaagtt aaagaacttc atcggctgca gacgctcttc
     2281 tccaaggcct ctgcgcgtta ccagcacttt ctgcgggatc cccaagaggc tgaggcagcg
     2341 ctgagcacat tgactgctga gttccagcag ttcctgcggg gagctcgggc cctgtgcatc
     2401 gagtcttggg cccgcttctc tctggtccga atggcagggg gcgctgctct tttggctgct
     2461 gcctgccttc tctgcctgct tgcttcccag ttggcagtcg ccccaggctt tctcttccgc
     2521 ccactactgc taatacctgt agcctggggc ctaacttgga ccatcctgta tgctggagtc
     2581 tcggtaacta ctgggtcgaa gatagactta gtggttctgg gggctgtggc tgcagccggt
     2641 tcactcctcc cttttctgtg gaaagcttgg gttagcaggg ggtctaagag gccactggct
     2701 cccctacttc ctgtccctag acctgtccta atattactgc tcattcgctt ggccaccttc
     2761 ttctcggata gctttgttgt tgctgaggcc agggccaccc ccttccttct gggctctctc
     2821 gttttcttcc tggttgctca gctccactgg gagggtcagc tactgccacc caaaccactc
     2881 acgatgtccc gccttggctc ttctgcccca acagcgcccc cacggcacag tggcgcgcat
     2941 gccctgtggc ttggaattgg gttgctttta tttacaaggc tcgctgggct ttttcaccgc
     3001 tgcccggaag agacacctgc ctgtcgctcc tctccctggc tgagtcctct ggcatctatg
     3061 gtgggaggtc gagccaagaa tttgtggtac ggagcttgcg tgggggcact ggtggccctg
     3121 ttagtcgtcg tgcgcttgtg gcttcgccgc tatggtaatc tcaagagtcc tgagccccct
     3181 gtgctctttg tgcgctgggg gatgcctctc atggtactgg gcacggctgc ctactgggca
     3241 ctggcatcag gtgcagagga agcaccacca cgcctccggg ccctggtcgc cggggcatca
     3301 gctgtgctgc ctcgggctgt gatggggctg gctgccttgg ggctcgtgct gctgctctgg
     3361 aggcctgtga cagtgctggt gaaagctggg gctgctactt caaggaccag gactatcctc
     3421 actcccttct caggtccccc tacttctcag gctgacctcg actatgtagt cccacaaatc
     3481 taccgccaca tgcaggagga gttccagggc cggctcgaga ggactaaagc tcagggtccc
     3541 ataaccgtgg ctgcctatca gttgggaagc gtgtactcgg ctgctatggt cacggccctc
     3601 ctcctcttgg ccttcccact tatgctgttg catgtagagc gggtcagcct ggtgttcctg
     3661 ctcctgtttc tgcagagctt ccttctcctg catctgctgg ccgctgggac accagtcgcc
     3721 acccctggcc cttttactgt gctgtggcag gcagtctcag cttgggtcct tctggctacc
     3781 cagaccttct actccacagg ccaccagcct gtcttttcag ccatccattg gcacgcagcc
     3841 tttgtgggct tcccagacgg ccatggctct tctacctggt tgcctgcctt actagtggga
     3901 gctaacacct ttgcctccca cctcctcttc gcagtaggct gcccactgct cctgctctgg
     3961 cccttcctgt gtgagcgtca agggccaaag agaaggcagc ccctcccggg aagtgagtct
     4021 gaagccagag tccggcctga ggaagaggag gagctgcagg agccactgat ggagatgcgc
     4081 ctccgggatg ctccgaatca cttcaatgca gccctgttgc agctgggcct caagtacctc
     4141 tttatccttg gagctcagat tctagcttgt gccttggcag cttccatcct ccgcaggcac
     4201 ctcatggtct ggaaggtgtt tgctcccaag ttcatttttg aagccgtagg tttcatcgtg
     4261 agcagtgtgg gacttctcct gggcatagca ttggtgatgc gagtggatgt cgctgtgagt
     4321 tcctggttca aaaaactagt tctggcccag cagaggtagc ccaggctgtg ctcgttggcg
     4381 tctggccatg gagagagctg gggactaatc cggcctgacc tgtactggtg ctggattctg
     4441 caagagactc cgacacacct cttgagccac cctgtaacca gagactgctc aactctggga
     4501 ctttattatt ttataactga gaatcatctg gagcccgagc ccgagcccga gccttccctc
     4561 ctgggttgga tacatctgac ggacaacagg ggcggctacc aaagtggaat aaaagaacaa
     4621 tgtgaatgtt t
//
