LOCUS       XM_011247793            4909 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus phosphatidylinositol glycan anchor
            biosynthesis, class A (Piga), transcript variant X2, mRNA.
ACCESSION   XM_011247793
VERSION     XM_011247793.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000086.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011247793.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4909
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="X"
     gene            1..4909
                     /gene="Piga"
                     /gene_synonym="Pig-a"
                     /note="phosphatidylinositol glycan anchor biosynthesis,
                     class A; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 4 ESTs, 181 long SRA
                     reads, 2 Proteins, and 97% coverage of the annotated
                     genomic feature by RNAseq alignments, including 21 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:18700"
                     /db_xref="MGI:MGI:99461"
     CDS             2107..2889
                     /gene="Piga"
                     /gene_synonym="Pig-a"
                     /codon_start=1
                     /product="phosphatidylinositol
                     N-acetylglucosaminyltransferase subunit A isoform X2"
                     /protein_id="XP_011246095.1"
                     /db_xref="GeneID:18700"
                     /db_xref="MGI:MGI:99461"
                     /translation="MLPACNRQRNSLREGTDLLSGIIPELCQKYQELHFLIGGEGPKR
                     IILEEVRERYQLHDRVQLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGL
                     QVVSTKVGGIPEVLPESLIILCEPSVKSLCDGLEKAIFQVKSGTLPAPENIHNVVKTF
                     YTWRNVAERTEKVYERVSKETVLPMHKRLDRLISHCGPVTGYMFALLAVLSYLFLIFL
                     QWMTPDSFIDVAIDATGPRRAWTHQWPRDKKRDENDKISQSR"
ORIGIN      
        1 atgtgctatg tggccttttc tttttagatc tcagaagtaa tggcttctta ttgcaggagt
       61 ttgcaaagct cacctagcac atctgtgacg atgtcattca gagatggccc taatgactat
      121 tttcatgcat tgtctttcat gcacctgtac acgatattca gaatcagtgg gccttttagg
      181 gcccgtggct atcttatggc ttcctggttt tatccactct tatgcaaggc actaatatca
      241 gcagtcagtc aagtgacaaa agaaaggaat aggtggctca gagtcaaaac ctggcttatg
      301 gctgatctag gacaggttac ttaatagctc tgtgtccgtt ttttatttgt ttaggtcaga
      361 agaggaacct gtgaaggttc agaggcagct cttaagaaga tctttgccta ggttcccctc
      421 caccccagcc tgtctttatt tcaggagtaa ttcattgctg gctttcgagt ttctgtggcc
      481 ctaatggtct ccactgtagc atttatgttt attatacatt tgaaacaacc tgcttattaa
      541 catagaaata gtctctccga tagtagttga aaagctgccc aataatcaga aatagcatgt
      601 gcagttgggg ggcagtaaca aatactacct atccccctta actgttggat ttttaagcat
      661 ttgagcacat gctgaattgt agagagcttg gtttagagct ctaggacttg agggttagct
      721 cactggctct gcctgtgtcc tattgcatgg ttgccactct gggtttcctt taaaggggtg
      781 ggagtggggc taaagggttg gaaacaatgt gctggatttt taatttgctt tcagttctac
      841 tccagtttag ataaactctc atctgacagg ggatttttta tttccctgat gttcatttat
      901 tggcttttca agctatttag ctttcataga aacttttcag cttatgcact atttaattaa
      961 attattcaat acagtcataa agaaaatggg tattcattga atttgtgcag aaatgccaac
     1021 aggctccgct gtgacatgtg gcagtatgta tattcaggag tcagcagtgg ccagtggagg
     1081 tggaggttgt aagtaagtaa gtggagttgg gtagacaact tgaactcagt tacattttct
     1141 ggggtgaagg aaatcctgtc ttcatattta atcaagatga tacgaatgga attctgtatt
     1201 ctaaacccct gctgggatat tggtgatgta tttcttataa ccttaaaatt tttgcccaac
     1261 ctatttttag tgaatagctt acattggtga gataaatgag aaagcatgat ggtgtgtgtg
     1321 cctgaagatt agcacattta ctcatacaga gagagggtaa acatgctctt atcttatgtg
     1381 ttttaactgt cagagctagc atcacagtta tggcctttcc ttttcttctt ttgcctgcct
     1441 ttctttgtct ctctctgtct ctgtctctgt ctctgtctct gtctctctct ctctctctct
     1501 ctctctctgt ttgtctctgt ctctgtctct ctttctcaag acagggtttc tctgtgtagc
     1561 cctggctatc ttagaactca ctctgtagac catgctggcc ttgaacttaa aaagctctgc
     1621 ctgcctctgc ctcctgagtg ctgggattaa aggcgtgcgc caccactgcc tggccccttc
     1681 ctgttttcag ttcaagaact caacagataa tctattgaac cttctccata gatcaggggc
     1741 cctgcaaaat gtaacacgag gaggaatggc cacatctatg gcccaggtgt gactagttat
     1801 attaatgatc tattccttct caatagggta attcccttgg gagatgttca gtggaccaga
     1861 tgtgcaaggc ccattggtgt agattaagag gatagagtta tgttctccct gcccagcttt
     1921 tgtggagaaa aggctggctt ctgagtcttc ttccttccat gtagttgggg ctcccctctc
     1981 ttctgtgggt gcaggcaccc ccagatactt gctgtagtgg taatgacaac ttaacatttg
     2041 tattctgcag ttgctaaagc ctgtgcatgg tacagtacct catttacccc aacaactgta
     2101 gggtagatgt tacctgcatg taacagacaa agaaacagtc tcagagaggg gactgatttg
     2161 cttagtggta taatacctga actctgtcag aaataccaag aattacattt cctaattgga
     2221 ggagagggac caaagagaat cattttggaa gaagtacggg aaagatacca actacatgac
     2281 agggtgcagc ttttgggagc tttagaacac aaggatgtta gaaatgtctt agttcaagga
     2341 cacatttttc ttaacacctc cctcactgaa gcgttctgca tggccatcgt ggaagctgcc
     2401 agttgtggtt tgcaggtcgt cagcacaaag gttggtggga ttcccgaagt ccttccggaa
     2461 agtcttatta ttctctgcga gccttcagta aaatctttgt gtgacggtct ggaaaaagcc
     2521 attttccaag tgaagtcggg gacattgcca gctccagaaa atatccacaa tgtagtgaag
     2581 actttctaca cctggcggaa cgtggcagag agaactgaaa aggtgtatga gcgagtgtcg
     2641 aaggaaactg ttttgccaat gcacaagaga ttggacaggc tcatctcaca ctgtggccct
     2701 gtgacgggct acatgtttgc tttgctggct gtgctcagct atctcttcct cattttcctg
     2761 cagtggatga ctccagactc tttcattgat gttgcaatag atgctactgg gccaaggaga
     2821 gcctggactc atcaatggcc tcgtgataag aaaagagatg agaatgataa gatatcccaa
     2881 agcaggtaga agcaagccca agttaacaag tcctattaga tacttgcaat agtcctgtta
     2941 gcatttgaaa ggagttttgc tcctgtgttg ggctttagag ttggatttgc tacctctgta
     3001 tggttcactt ttgttgttgc aaaaagataa acacttatgc aattcctgag tgtgggaact
     3061 ccttgcactt ctttaaaatt taggggataa tggtttagcc actcaggtag gacagttttc
     3121 agattactga gaccccccta agcagagatg ttttaacatt atattttggg agccttgggt
     3181 gctgaaaggc caaatgtttc tggattgttt ttggccaatt tttcacatta taccattaat
     3241 ccacattcac cagatgttta catgctttct ttagggaggt acaacagtta tgtgaactgt
     3301 tttaaggcaa ggtcatgtat ccttctctgg gcatcattga agtcatgttc ctagacactt
     3361 actgggtcca ctcaagggat acgtggaatg tgatttcttg agcaagacca tctattggtt
     3421 gccagcatgt ttgaacacct gctgtgtatg aaaagttgac ctagatggtt cctgagacta
     3481 aggactggtc aacgagaagt ggtaaaactg tcaacatggc gaaatgctca agctactgaa
     3541 tgacaggaga tcatcgctgg catacaccaa gtacctttct gacctgttct atgtatatgc
     3601 attctcttag gaagagccct tctctctctc tctctctctc tctctctctc tctctctgta
     3661 tgtgtgtgtg tgtgtgtgtg cgtgtgtgtg tatgtgtgca cgcgtgcgtg tgtgttgttg
     3721 ctttttatgt tctatggatt gaccgataca actgttgatg cttgtgctgg ccaaccctct
     3781 gcttttatag tgcacagttc agtcccccat aaatgccttt atggtttcta agcagaacag
     3841 aaaaggtgtg ctatctcaaa accagctgct cttcctgccc tctgtggaag ccccttcctg
     3901 tcactctggt cttgcccatc tctgataagt attgccagtg tggggaaagg cttttctcca
     3961 gaatggttta tttagagcgt attaattctg aaactcgtca gagctcgcag gctttttgtg
     4021 ggtggaattt ctcaatcgta attaaggttt ccagagccat gggtttttaa atcccaaact
     4081 gtatgtgata tgtattatta atcctttgaa ctctttcgca tgggtttgtg tggggaacag
     4141 actaaaatga gagcagcgag ccacttgtgg gtgttccatt ctgtcagtat tgtgattctg
     4201 tacaggagtt ttttttagcg acatttgcaa aacttttaaa agagtatctt aacatgccta
     4261 ttacttggtt gccaccgata taaaagagat atatttgtgt ttggtttcta tggaaacaaa
     4321 tggtagagag taatttttaa aatatagaag ttagggcttc ttttattgga gaaaaatgac
     4381 cttgtccaaa ccgttcagtc ttatttaaat ctttatgcgc tgagacaggc gtacaggtta
     4441 acagtgccaa tatccacggt agactgaggc atgtgtaaca cttggctgta tttattctac
     4501 tctattattt cttctatgtt tgcttctagc ttttattaaa atatcattaa atgcttcagt
     4561 tgttctttat ttaagatgaa catagaattg aaaattaatt tgctcttgtg ggcaaatatg
     4621 taatttatga attaaaattg ttttcctttt ttgaacaagt aaaaataaaa tttgtgtgac
     4681 agaaaccatt ttcaggcttc ctggatacct tagttgtcag tgttgtactg gtcaggatgt
     4741 gggacactct tccactgtgc tactcataat tatctgaaat gaaattagcg tggatgagga
     4801 atcgttggaa agatactgtg ttgcttttga tgtcatacac atgaaaccag tgtgctaaaa
     4861 catgctcatg tccagtaata aagatgagaa cgctgtttta atagtctta
//
