LOCUS       XM_030242475            3623 bp    mRNA    linear   ROD 10-APR-2023
DEFINITION  PREDICTED: Mus musculus phosphatidylinositol binding clathrin
            assembly protein (Picalm), transcript variant X9, mRNA.
ACCESSION   XM_030242475
VERSION     XM_030242475.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On May 2, 2023 this sequence was replaced by
            NM_001420466.1.
            
            On Sep 21, 2020 this sequence version replaced XM_030242475.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/05/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3623
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..3623
                     /gene="Picalm"
                     /gene_synonym="CALM; CLTH; fit-1; fit1; mKIAA4114; PAP180"
                     /note="phosphatidylinositol binding clathrin assembly
                     protein; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 51 ESTs, 1843 long SRA
                     reads, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 51 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:233489"
                     /db_xref="MGI:MGI:2385902"
     CDS             364..2286
                     /gene="Picalm"
                     /gene_synonym="CALM; CLTH; fit-1; fit1; mKIAA4114; PAP180"
                     /codon_start=1
                     /product="phosphatidylinositol-binding clathrin assembly
                     protein isoform X9"
                     /protein_id="XP_030098335.1"
                     /db_xref="GeneID:233489"
                     /db_xref="MGI:MGI:2385902"
                     /translation="MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDY
                     LIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNT
                     LFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMN
                     TEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINL
                     LEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLD
                     ALEQHLASLEGKKIKDSTAASRATTLSNAVSSLASTGLSLTKVDEREKQAALEEEQAR
                     LKALKEQRLKELAKKPHTSLTTAASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPND
                     LLDLQQPTFHPSVHAMSAAPQGASTWGDAVEDAIPSLNPFLTKSSGDVHLPIASDVST
                     FTTRTPTHEMFVGFSPSPVAQPHSSAGLNVDFESVFGNKSTNVAVDSGGGLLKPTVAS
                     QNQSLPVAKLPPNKLVSDDLDSSLANLVGNLGIGNGTTKNDVSWSQPGEKKLTGGSNW
                     QPKVAPTTAWSAATMAPPVMAYPATTPTGMIGYGIPPQMGSVPVMTQPTLIYSQPVMR
                     PPNPFGPVSGAQIQFM"
ORIGIN      
        1 gtcacgtgac ctaggggcag cccggaaagc tccgaggagg agcctggcgc cgccattttc
       61 ctgcagctgc ctggccctct tacccggtcg ggctccagct gaccagggaa ggggtgggcc
      121 gaggctgagg cgcgggaccc gggagtggcc ccgacttggt gtgggagccc gccgggggaa
      181 cacgcgagcc ggggctctcg gagcgggtgg cggcgcgcgg ccctgagccc cgccccaggc
      241 cggcaggcgg gcggggagcc ggtgggggta gggggtgcgg tggggggtgg ggaccctcgg
      301 gcgcttgggg gtcccaggcc ccgccggctg cggagcggaa ggggtggcgg acgagccgca
      361 gagatgtctg gccagagcct gacggaccga atcaccgcgg cccagcacag tgtcactggc
      421 tccgcggtat ctaagacagt atgcaaggcc acgacccacg agatcatggg ccccaagaaa
      481 aagcacctgg actacttaat tcagtgtaca aatgagatga atgtgaacat cccacagttg
      541 gcggacagtt tgtttgaaag aactactaac agtagttggg tggtggtctt caaatcactc
      601 attacaactc atcatttgat ggtgtatgga aatgagcgtt tcattcagta tttggcttca
      661 agaaacacat tgtttaactt aagcaatttt ttggataaaa gtggattgca aggatatgat
      721 atgtctacat ttattagacg gtatagtaga tacttaaatg aaaaagcagt ttcatacaga
      781 caagttgcat tcgatttcac aaaagtgaag agaggagctg atggagttat gagaacaatg
      841 aacacagaaa aactcttaaa aactgtacca attatccaaa atcaaatgga tgcacttctt
      901 gattttaatg ttaatagtaa tgaacttaca aatggggtaa taaatgctgc cttcatgctc
      961 ctcttcaaag atgccattag actatttgca gcatacaatg aaggaattat taatttattg
     1021 gaaaaatatt ttgatatgaa aaagaaccag tgcaaagaag gtcttgacat ctataagaag
     1081 tttctgacta ggatgacaag aatctcagag tttctgaaag ttgcagagca agttggaatt
     1141 gacagaggag atattccaga tctttcacag gcccccagca gtcttcttga tgctttagaa
     1201 caacatttag cttccttgga aggaaagaaa atcaaagatt ccacagctgc aagcagggct
     1261 acaacacttt ccaatgcagt ctcttctttg gcaagcactg gcctatctct gaccaaagtg
     1321 gatgaaaggg aaaaacaggc agcattagag gaagaacagg ctcgtttaaa agcattaaag
     1381 gaacagcgtc taaaagaact tgcaaagaaa ccgcatacct ctctaacaac tgcagcctct
     1441 ccggtgtcca cctcagcagg gggaataatg actgcaccag ccattgacat attttctacc
     1501 cctagttctt ctaacagcac atctaagctg ccaaatgacc tgcttgactt gcagcagcca
     1561 acctttcacc cgtctgtcca cgccatgtcg gctgctcctc agggagcgag tacatgggga
     1621 gatgctgttg aggatgccat tccaagctta aaccctttcc tcacaaaaag tagtggtgat
     1681 gttcacctgc ccattgcttc agatgtatcc acttttacta ctaggacacc tactcatgag
     1741 atgtttgttg gattcagtcc ttctccagtt gcacagccac attcttcagc tggccttaat
     1801 gttgactttg aatctgtgtt tggaaataaa tctacgaatg ttgctgtaga ttctggtggt
     1861 ggacttctca aaccaacagt ggcctcccag aaccagagtc ttcctgttgc caaacttccg
     1921 cctaacaaat tagtgtctga cgacttggat tcatctttag ccaaccttgt gggcaatctt
     1981 ggcattggaa atggaaccac taagaatgat gtaagttgga gtcaaccagg tgaaaagaag
     2041 ttaactggag gatctaactg gcaaccaaag gttgcaccaa caactgcctg gagcgctgca
     2101 acaatggcgc cccctgtaat ggcctatcct gctactacac caacgggcat gataggatat
     2161 ggaattcctc ctcagatggg aagtgtacct gtaatgacac aaccaacctt aatatacagc
     2221 cagcctgtca tgagaccacc aaaccccttt ggccctgtat caggagcaca gatacagttt
     2281 atgtaactag atggaagaga atggaattac tccaagaata caagtgcaca ggcggcaact
     2341 ccttacttcc agcaaaattg aaactgctgt ctctgaaact cttcctccat tagagcgctc
     2401 cagtaaccca tgaaggccca cagcgggatg ggactagttt ataggagagc gttgtcaata
     2461 ccacttataa agccaagaat tgccatgatt taagactaag atctgtcttt ttggtgacta
     2521 acacttcagt tctttcaact cctattaata cccataatca gtaacctacc aagaaaagcc
     2581 cgtatttgga aagtgtggag tttgtgttgg aaaagctgcc tggagagaag agttgtgtcc
     2641 tttaccatag caacaggatt cattggggga tcaaaatcat aattttaaat tatgcattat
     2701 atttcttttc tccactcctc acatatacag aaaccataat tgaagttaac ttttcttttt
     2761 aaaaaaaatt tatattcagt ttgcagtaga cattccttaa gtatttgtat ttatttatga
     2821 ttatcaattt tacataacat taatattata tcagacctcc ttaagaaaat gagtatggat
     2881 gttcacagta tgtttgattt ttatccacaa gaatgaatct gattcagaat gcttttcagc
     2941 tgacatacag agcactaaat actttacggc aaatccatag gtctgaatct cttaagaatt
     3001 ctcagtctct ctgggatgta gggcgcatta taaatgcatt aatccttata gtcaatcctg
     3061 tgcctaggat tttgcaaggg aacagttcac tgactaggaa aagcactaca tttaaaactc
     3121 agcattagtg cattgggaag gatctttact gctttgtgct tggcatgtcg ttattttcca
     3181 tttgacatta gggcctttcc aaatgaatgt gaggagttgc tttcacttca agactgtcct
     3241 tcttttcagt aaaactttag gagatgttat ggggaaaggg agggaacaga aatccttgaa
     3301 ctttttattt ggcgtgtgcc atgttatgat catgtacctt ttcaataagg ggagatagta
     3361 tctttaaagt caatgtctag ccaagagttt agttaatgaa gaattaaact gcactgttga
     3421 tcggtgcttt ctgtaaatac atcttatcgc ttgggttgag aggggcctta agaaggacag
     3481 ttcattgtag gaaagcaatt ctgtacatga gttaagcata cttgttgcat tgtctctgca
     3541 gattctattt ttgtttacaa tattaaaatg tatgttagca aatgggtgga ttttcaaata
     3601 aaatgcagct tccacaaaac atg
//
