LOCUS       NM_145981               2789 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus phytanoyl-CoA hydroxylase interacting protein
            (Phyhip), mRNA.
ACCESSION   NM_145981 XM_001000600 XM_895316 XM_918656
VERSION     NM_145981.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2789)
  AUTHORS   Raspa,M., Guan,M., Paoletti,R., Montoliu,L., Ayadi,A.,
            Marschall,S., Fray,M. and Scavizzi,F.
  CONSRTM   EMMA/Infrafrontier Technical Working Group
  TITLE     Dry ice is a reliable substrate for the distribution of frozen
            mouse spermatozoa: A multi-centric study
  JOURNAL   Theriogenology 96, 49-57 (2017)
   PUBMED   28532839
REFERENCE   2  (bases 1 to 2789)
  AUTHORS   Kim,M.Y., Jeong,B.C., Lee,J.H., Kee,H.J., Kook,H., Kim,N.S.,
            Kim,Y.H., Kim,J.K., Ahn,K.Y. and Kim,K.K.
  TITLE     A repressor complex, AP4 transcription factor and geminin,
            negatively regulates expression of target genes in nonneuronal
            cells
  JOURNAL   Proc Natl Acad Sci U S A 103 (35), 13074-13079 (2006)
   PUBMED   16924111
REFERENCE   3  (bases 1 to 2789)
  AUTHORS   Koh,J.T., Jeong,B.C., Kim,J.H., Ahn,Y.K., Lee,H.S., Baik,Y.H. and
            Kim,K.K.
  TITLE     Changes underlying arrhythmia in the transgenic heart
            overexpressing Refsum disease gene-associated protein
  JOURNAL   Biochem Biophys Res Commun 313 (1), 156-162 (2004)
   PUBMED   14672712
REFERENCE   4  (bases 1 to 2789)
  AUTHORS   Koh,J.T., Choi,H.H., Ahn,K.Y., Kim,J.U., Kim,J.H., Chun,J.Y.,
            Baik,Y.H. and Kim,K.K.
  TITLE     Cardiac Characteristics of Transgenic Mice Overexpressing Refsum
            Disease Gene-Associated Protein within the Heart
  JOURNAL   Biochem Biophys Res Commun 286 (5), 1107-1116 (2001)
   PUBMED   11527414
REFERENCE   5  (bases 1 to 2789)
  AUTHORS   Koh,J.T., Lee,Z.H., Ahn,K.Y., Kim,J.K., Bae,C.S., Kim,H.H.,
            Kee,H.J. and Kim,K.K.
  TITLE     Characterization of mouse brain-specific angiogenesis inhibitor 1
            (BAI1) and phytanoyl-CoA alpha-hydroxylase-associated protein 1, a
            novel BAI1-binding protein
  JOURNAL   Brain Res Mol Brain Res 87 (2), 223-237 (2001)
   PUBMED   11245925
REFERENCE   6  (bases 1 to 2789)
  AUTHORS   Lee,Z.H., Kim,H., Ahn,K.Y., Seo,K.H., Kim,J.K., Bae,C.S. and
            Kim,K.K.
  TITLE     Identification of a brain specific protein that associates with a
            refsum disease gene product, phytanoyl-CoA alpha-hydroxylase
  JOURNAL   Brain Res Mol Brain Res 75 (2), 237-247 (2000)
   PUBMED   10686344
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK049900.1.
            
            On Apr 6, 2007 this sequence version replaced NM_145981.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK049900.1, BC030494.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2789              AK049900.1         2-2790
FEATURES             Location/Qualifiers
     source          1..2789
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 36.32 cM"
     gene            1..2789
                     /gene="Phyhip"
                     /gene_synonym="C630010D02Rik; Lnap1ip; PAHX-AP#1;
                     PAHX-AP1"
                     /note="phytanoyl-CoA hydroxylase interacting protein"
                     /db_xref="GeneID:105653"
                     /db_xref="MGI:MGI:1860417"
     exon            1..287
                     /gene="Phyhip"
                     /gene_synonym="C630010D02Rik; Lnap1ip; PAHX-AP#1;
                     PAHX-AP1"
                     /inference="alignment:Splign:2.1.0"
     exon            288..472
                     /gene="Phyhip"
                     /gene_synonym="C630010D02Rik; Lnap1ip; PAHX-AP#1;
                     PAHX-AP1"
                     /inference="alignment:Splign:2.1.0"
     CDS             308..1300
                     /gene="Phyhip"
                     /gene_synonym="C630010D02Rik; Lnap1ip; PAHX-AP#1;
                     PAHX-AP1"
                     /note="lupus nephritis-associated peptide 1 interacting
                     protein; PAHXAP1; phytanoyl-CoA hydroxylase-associated
                     protein 1"
                     /codon_start=1
                     /product="phytanoyl-CoA hydroxylase-interacting protein"
                     /protein_id="NP_666093.1"
                     /db_xref="CCDS:CCDS36971.1"
                     /db_xref="GeneID:105653"
                     /db_xref="MGI:MGI:1860417"
                     /translation="MELLSTPHSIEINNITCDSFRISWAMEDSDLERVTHYFIDLNKK
                     ENKNSNKFKHRDVPTKLVAKAVPLPMTVRGHWFLSPRTEYSVAVQTAVKQSDGEYLVS
                     GWSETVEFCTGDYAKEHLAQLQEKAEQIAGRMLRFSVFYRNHHKEYFQHARTHCGNVL
                     QPYLKDNSGSHGSPTSGMLHGVFFSCNTEFNTGQPPQDSPYGRWRFQIPAQRLFNPST
                     NLYFADFYCMYTAYHYAILVLAPKGSLGDRFCRDRLPLLDIACNKFLTCSVEDGELIF
                     RHAQDLILEIIYTEPVDLSLGTLGEISGHQLMSLSTADAKKDPSCKTCNISVGR"
     exon            473..647
                     /gene="Phyhip"
                     /gene_synonym="C630010D02Rik; Lnap1ip; PAHX-AP#1;
                     PAHX-AP1"
                     /inference="alignment:Splign:2.1.0"
     exon            648..765
                     /gene="Phyhip"
                     /gene_synonym="C630010D02Rik; Lnap1ip; PAHX-AP#1;
                     PAHX-AP1"
                     /inference="alignment:Splign:2.1.0"
     exon            766..2789
                     /gene="Phyhip"
                     /gene_synonym="C630010D02Rik; Lnap1ip; PAHX-AP#1;
                     PAHX-AP1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2768..2773
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Phyhip"
                     /gene_synonym="C630010D02Rik; Lnap1ip; PAHX-AP#1;
                     PAHX-AP1"
                     /note="hexamer: AATAAA"
     polyA_site      2789
                     /gene="Phyhip"
                     /gene_synonym="C630010D02Rik; Lnap1ip; PAHX-AP#1;
                     PAHX-AP1"
                     /note="major polyA site"
ORIGIN      
        1 gatttcgctc ttgcctctct tcttgcgcgc ttactcgctg ggttcccagc aacgccgccg
       61 ttttcttgcc gggagcagta gctatagctg cagagccaga caggcgctgc ctgtggggca
      121 tggaagccga cttcccagta gcccagagag gagcgagcga gccccgctgc ctgtgacccc
      181 aggcgtcagg ctgctgtccc ctgcctggag agatcatcat ctatctacac agagtctctc
      241 ccttccttct cttccaagta tccctctgca gggccggctg aagccaggag ccaaaccaga
      301 ggggaacatg gagcttctgt ctacccccca cagcatcgag atcaacaata tcacctgtga
      361 ctctttccgt atctcctggg ccatggagga cagtgacctg gagagggtca cccattattt
      421 tattgacctg aacaagaagg agaataagaa ttccaacaag ttcaagcacc gagatgtccc
      481 caccaagctt gtggccaagg ccgtgcctct gcccatgacg gtgagaggcc actggttcct
      541 gagtccccgg acagagtaca gtgtggcagt gcagactgcg gtgaagcaga gtgatggaga
      601 gtacctggtg tctggctgga gtgagactgt ggagttctgc actggggact atgccaagga
      661 acaccttgcc cagctgcagg agaaggctga gcagatcgct ggccgcatgc tccgcttctc
      721 tgtgttctac cgcaaccatc acaaggagta cttccagcat gccaggaccc actgtgggaa
      781 cgtactgcag ccttacctga aggacaacag cggtagccac ggctccccca ccagcggcat
      841 gctgcacggg gtcttcttca gctgcaacac ggagttcaac acaggccagc ccccgcagga
      901 ctccccttac ggccgctggc gcttccagat ccctgcccag cgcctcttca accccagcac
      961 caacctctac tttgcggact tctactgtat gtacacagcc taccactatg ccatcttggt
     1021 gctggcaccc aaaggctccc tgggggaccg cttctgtcgt gaccggctgc ccctcctgga
     1081 cattgcctgc aacaagttcc tgacctgcag tgtggaggat ggagagctga tcttccgcca
     1141 cgctcaggac ctcatcttgg agatcatcta caccgagcct gtcgacctgt ccctgggcac
     1201 cctgggagag atcagcgggc accagctcat gagcctgtcc actgctgacg ccaagaaaga
     1261 tcccagctgc aagacctgca acatcagcgt gggccgctag ggactcctgg ggagccggag
     1321 ggcaggaggg tgggacgtga tgtgtggctt aggtttgggg acctggcttt ctctcccctc
     1381 tccctgctcc ctccactttg tccactaccc cctcctccct acgttggaga caacggaagg
     1441 tcttagcatg gcacagtccg ggcctggtgg acctggagat gggggggctt ctcagcaggt
     1501 gataacctcc tttcctgttt ccctcttctg gtttttgacc tcaagcaggc ctccctgagt
     1561 cctcgggcat ctcccagagt cctccctgcc tctcgggcca atgcccatgt atagcctggc
     1621 ctccatatag atgcagaaag ctgtggggta cctccttcct agccccaccc accccactca
     1681 gggctacccc agacagcccc cttctcactc agctgggcct gagggctttg cctcctccgt
     1741 gccagtgcca ggctcctctc tctataaata acctcctgca ctgctgtctt gccctggctg
     1801 cccctgatcc ccccagagcc caattcccgc atgggagaac cgtccatccc tcctgtcact
     1861 gtcgttgacc cacttgagat gccctcccac tctctggaaa agtaccctct ctcgttttct
     1921 agtttggagg gctcgctctg gtttcttgag attttccttt cttctataca ttcctcagca
     1981 aatctctctc gctcagagag cacccaggta ggcacaaaac agctgctggg gtcgaggagg
     2041 gggaaggaga cccctgagac ctgttcctca gcctgaagcg ggtaacctca tgtcttgatg
     2101 ggtctgacag agcgagagaa ctgagtgtga cccacagggc cctggcaccc tgcccagctg
     2161 tgcactttgc tcgctcaccc gctcacccac ccgctctgcc tgagagtcat gactgttctg
     2221 tgccatgtga gccagatctt tggctctcta tcacaccatc ccttgctctc tgggctaatc
     2281 ccctggggag ttcctgatga attccccgcc tcccccccag ctccctgtgt tttcatcttg
     2341 ttcttgctgt tgtctggatc aggagggcgg ggagggtgga ctccctgaga caagacaagc
     2401 aggtagagac agattagagg gagggattgt catagtaaca ttttccgagg tgacagagat
     2461 gatacacagg cagctggact tctgtgaagg acagaggagc tggcagaccc acagggccac
     2521 acctctgagg gaccggtgaa tggctggcta ccagagacag tgctggtaga cagtcaggta
     2581 cctcatggga tgggccaaga gatctgggat cctgggaact atgtagagaa gaggatttga
     2641 caccccccac ccacccaccc aaggcccttc ccctctgctg acagcattgt tgtggtcgtg
     2701 gcctgctgcc ttgtcttctg tccctgggtg gggcacaccc ttctgtgctg tgcttgccat
     2761 gagcatcaat aaaccacaat ggcccaagg
//
