LOCUS       XM_006527894            6129 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus phosphorylase kinase alpha 1 (Phka1),
            transcript variant X1, mRNA.
ACCESSION   XM_006527894
VERSION     XM_006527894.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000086.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006527894.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6129
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="X"
     gene            1..6129
                     /gene="Phka1"
                     /gene_synonym="5330411D17; 9830108K24Rik; Phka"
                     /note="phosphorylase kinase alpha 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     mRNAs, 41 ESTs, 436 long SRA reads, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 18 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:18679"
                     /db_xref="MGI:MGI:97576"
     CDS             378..4064
                     /gene="Phka1"
                     /gene_synonym="5330411D17; 9830108K24Rik; Phka"
                     /codon_start=1
                     /product="phosphorylase b kinase regulatory subunit alpha,
                     skeletal muscle isoform isoform X1"
                     /protein_id="XP_006527957.1"
                     /db_xref="GeneID:18679"
                     /db_xref="MGI:MGI:97576"
                     /translation="MRSRSNSGVRLDGYARLVHQTILCHQNPVTGLLPASYDQKDAWV
                     RDNVYSILAVWGLGLAYRKNADRDEDKAKAYELEQSVVKLMRGLLHCMIRQVDKVESF
                     KYSQSTKDSLHAKYNTKTCATVVGDDQWGHLQLDATSVYLLFLAQMTASGLHIIHSLD
                     EVNFIQNLVFYIEAAYKTADFGIWERGDKTNQGISELNASSVGMAKAALEALDELDLF
                     GVKGGPQSVIHVLADEVQHCQSILNSLLPRASTSKEVDASLLSVVSFPAFAVEDSHLV
                     ELTKQEIITKLQGRYGCCRFLRDGYKTPKEDPNRLYYEPAELKLFENIECEWPLFWTY
                     FILDGIFSGNVEQVQEYREALDAVLIKGKNGVPLLPELYSVPPDRVDEEYQNPHTVDR
                     VPMGKLPHMWGQSLYILGSLMAEGFLAPGEIDPLNRRFSTVPKPDVVVQVSILAETEE
                     IKAILKDKGIDVETIAEVYPIRVQPARILSHIYSSLGCNSRMKLSGRPYRLMGVLGTS
                     KLYDIRKTIFTFTPQFIDQQQFYLALDNQMIVEMLRTDLSYLCSRWRMTGQPTITFPI
                     SHTMLDEDGTSLNSSILAALRKMQDGYFGGARIQTGKLSEFLTTSCCTHLSFMDPGPE
                     GKLYSEDYDEDYEDDLDSGNWMDSYDSTSNARCGDEVARYLDRLLAHTVPHPKLAPTS
                     RKGGLDRFRAAVQTTCDLMSLVAKAKELHIQNVHMYLPTKLFQPSRPSLNLLDSPESP
                     QDSQVPSVHVEVHLPRDQSGEVDFQSLVSQLKETSSLQEQADILYMLYSMKGPDWNTE
                     LYEEGGATVRELLSELYVKVGEIRHWGLIRYISGILRKKVEALDEACTDLLSYQKHLT
                     VGLPPEPREKTISAPLPYEALTKLIDEASEGDMSISTLTQEIMVYLAMYMRTQPGLFA
                     EMFRLRIGLIIQVMATELAHSLRCSAEEATEGLMNLSPSAMKNLLHHILSGKEFGVER
                     SVRPTDSNVSPAISIHEIGAVGATKTERTGIMQLKSEIKQTSGGHPSGVDLMSPSFLS
                     PAACIAASSGSFPTVCDHQTSKDSRQGQWQRRRRLDGALNRVPIGFYQKVWKILQKCH
                     GLSVEGFVLPSSTTREMTPGEIKFSVHVESVLNRVPQPEYRQLLVEAILVLTMLADIE
                     IHSIGSIIAVEKIVHIANDLFLQEQKTLGADDTMLAKDPASGICTLLYDSAPSGRFGT
                     MTYLSKAAATYVQEFLPHSLCAMQ"
ORIGIN      
        1 cccgtgggcg tagcgcgcag ctgcaggacc cacgccccgc ccccgcacgc tcgccaaggg
       61 aggcggcacc cggggcgctg acccgctgct gtcgccggcc ttcagtctca gggccgcccc
      121 ggtctccttc agtcaagcgg aggatgccgg tgcgccaccc ggggaccacg ggagactgag
      181 tggagacggg gtctttgccg gccgaagcct agaccgcggg aggctgagcc gcggcctgaa
      241 gtggactctg aggccgccgg aaccaggtga cgcgcgggaa ccattggcca cacgagcaag
      301 ggagcgttta gaaggtttcc gtaggcctgg cgtccgagct tcccgtgtgt gcagtggggg
      361 attagggacg tggcaccatg aggagccgca gtaactcggg agtccgcctg gacggctatg
      421 ctcggctggt gcatcagacc atcctgtgcc atcagaatcc agtgacaggc ttgcttccag
      481 ccagctatga tcaaaaagat gcctgggtcc gagataatgt gtacagtatc ctggctgtgt
      541 ggggtttggg cctggcatat cgcaaaaatg ctgaccgtga tgaggacaag gcaaaggcct
      601 atgaactgga gcagagtgta gtgaagttaa tgaggggact gctgcactgc atgatcagac
      661 aggtggataa agtagagtcc ttcaagtaca gtcagagtac taaagatagc ctccatgcca
      721 agtacaacac caaaacttgt gccactgtgg tgggtgatga ccagtgggga cacctgcagt
      781 tggatgctac ttctgtgtac ctgctcttcc tagcacaaat gactgcctca ggactccata
      841 tcatccacag cctagacgaa gtcaatttta tacagaacct cgtgttttac attgaagctg
      901 catataaaac tgctgacttt gggatatggg aacgtggcga taagacaaac caaggcatct
      961 cggaattgaa tgcgagttca gttggaatgg ccaaggcagc cctggaagca ctagatgaat
     1021 tagacttgtt tggtgtgaaa ggtgggccac aatcagttat ccatgtcctg gctgatgaag
     1081 tccaacactg ccagtctatc ctgaattcac tactgcccag ggcttcaaca tccaaagaag
     1141 ttgatgccag tctgctctca gtggtctctt tcccagcctt tgctgtagag gacagccatt
     1201 tggtggagct caccaaacag gagatcatca ccaagcttca gggtcgttat ggttgctgtc
     1261 gttttctgcg agatggatat aaaactccta aagaggatcc caatcgccta tactatgaac
     1321 cagctgagct gaagctattt gaaaacattg agtgcgaatg gccattgttc tggacatact
     1381 ttatccttga tgggatcttc agtggcaacg tagaacaggt tcaagaatat agagaggctc
     1441 ttgatgcagt cctcatcaag ggcaaaaatg gagtccctct tcttccagag ctgtacagtg
     1501 tccctcctga cagggttgat gaagagtatc aaaatcccca cactgtggat cgagtcccta
     1561 tgggaaaatt gcctcacatg tggggtcagt ctctatacat tttaggaagc ttgatggcag
     1621 agggattttt agctcctgga gaaattgatc ccctgaatcg taggttttct actgtgccaa
     1681 agccagatgt ggtggttcaa gtctccattc tggctgaaac agaagaaatc aaggccattt
     1741 tgaaggacaa aggaattgat gtggagacca ttgctgaagt gtaccccata agagtacagc
     1801 cagctcgtat tctcagccat atttattcta gtctaggatg caacagtaga atgaaactca
     1861 gtggacgacc ctacaggctc atgggtgtgc ttggaacatc aaaactttat gacattcgca
     1921 aaactatctt tactttcact ccacagttta tagaccagca acagttctac ctggctctgg
     1981 acaaccagat gatagtagaa atgctcagaa cagacctttc ctacctctgt agccgctgga
     2041 ggatgacagg ccagcccacg atcactttcc ctatctcgca caccatgctt gatgaagatg
     2101 gaaccagctt gaattcaagt atcttggcag cactccgaaa aatgcaggat ggctattttg
     2161 gtggggccag gatccaaaca ggtaaattgt cagagttttt gacaacatct tgctgcacac
     2221 acttaagctt catggaccct ggacctgagg gtaagctgta cagtgaagat tatgatgaag
     2281 actatgaaga tgatttggac tctggcaact ggatggacag ctatgattca acaagtaatg
     2341 ctcgctgtgg tgatgaagtt gcccgttatt tagaccgcct tttggcacac actgttcccc
     2401 atcctaaact agctcctacc tcacggaagg gagggctaga tcggttccga gctgctgtgc
     2461 aaacaacttg cgacttaatg tccttggtgg ccaaggccaa ggagctgcat atacagaatg
     2521 ttcacatgta tcttcctaca aagttatttc agccttctcg tccttcactc aacttacttg
     2581 actcccctga gtctccacaa gatagccagg ttccttccgt tcatgtagaa gtgcatcttc
     2641 ctagggacca gtctggggaa gtggacttcc agtcattggt ttcacagttg aaggagacct
     2701 caagcttaca ggagcaagct gatatactct acatgctgta ttcaatgaaa ggacctgact
     2761 ggaacactga attgtatgaa gaaggggggg ctactgtcag agagcttctt agtgaactgt
     2821 atgtcaaagt tggtgaaatt cggcactggg gtctgatccg atatatctct gggatcttac
     2881 ggaagaaagt ggaggcactt gatgaggcct gcacagacct tctgtcctac cagaaacacc
     2941 tgacagtagg acttcctcca gaacctcgag agaagaccat ctctgcgcct ctaccgtacg
     3001 aggcactcac taagctgata gatgaagcca gtgaaggcga catgagcatc tcaaccctta
     3061 cacaggaaat aatggtctat cttgccatgt atatgagaac tcagcctggc ctctttgcag
     3121 aaatgttcag acttcgaatc ggtttgatca tacaagttat ggcaacagaa ctagcacact
     3181 ctcttcgatg ttcagctgag gaagccacag agggcctgat gaatctcagt ccttcagcca
     3241 tgaagaacct cctgcatcac attctcagtg gcaaagagtt tggagtggaa cgaagcgttc
     3301 gtcccactga ttcaaatgtg agtcctgcta tttccatcca tgagattggt gctgttggag
     3361 caacaaaaac tgaacgaact ggaatcatgc agttaaaaag tgagataaag cagactagtg
     3421 gtggtcatcc ctcgggtgta gatttgatgt cgccatcctt tctgtcccct gcagcctgta
     3481 ttgctgcaag tagtggatcc tttcctacgg tgtgtgatca tcagacatct aaagatagtc
     3541 gtcaaggcca gtggcaacgc aggagaaggc tagatggagc actaaataga gtaccaattg
     3601 gattttatca aaaagtatgg aaaattttgc agaaatgtca tgggctttct gtggaaggtt
     3661 ttgttcttcc ctcttcaacc actagggaga tgaccccagg tgagattaaa ttctctgtcc
     3721 atgtggagtc tgtcctgaat cgtgtccctc agccagaata ccgccaactt ctggttgaag
     3781 ccatccttgt tctcaccatg ctggcagata ttgaaattca tagcattggg agcatcattg
     3841 ctgtggagaa aatagttcat attgccaacg acttgttcct tcaagaacag aaaaccctcg
     3901 gcgcagatga taccatgttg gcaaaggatc ctgcatctgg catctgtact ctcctgtatg
     3961 acagtgcacc cagtggcaga tttggcacca tgacctacct ctccaaggca gctgccacct
     4021 acgtgcagga gtttctgcca cacagcctct gtgccatgca gtgagggctg tgggttctgc
     4081 ctgttagaac acttcagtag ctagcccgtc tggttgattg tgcatggaac tgacatgtta
     4141 acacctgatc actcccccag gcccttttcc tgccccatcc ctcctaggaa gagagaactt
     4201 tgctgacgat ctcactactt ttgaagaaaa gaagccctat ctggagactt gactccagag
     4261 cgaagcccta tctggagact tgactccaga gcgaaggttc aactgcgcct gcagtcacta
     4321 tccctacttt tgtggttcat agaagtctgc atgtgcgttg attctgtaga gctgttagtg
     4381 gcttagtttt taaactccta ttggggagta ggtattaata acttattcct gtaagttggt
     4441 tttcttattt gttggttttt acgtgtgtat atgagtggtg ggtattgatt aggccatcat
     4501 ttcaagagag tagatgctaa gttggatttc gtgctgctgt aaattggaac tgtcgactct
     4561 aagtgccttt acttaggaaa agccagtacc acatcatggc ttccttcttc actcaaaggc
     4621 tgctttgctc tgagtgggga aagagtgggt gttttgtaga agcattgcct ttcattgttc
     4681 tttctatatc tgtccacaat gcctactgtc tctgtggtga aatattaaaa tatgtaagct
     4741 cacatggaag tttaagaatt tctgtgttaa tacttggaat aacccagaga aaagaagcca
     4801 gaagcctaat tccagagagg aagggaaaga agttctgtag gtagtgcttt acacataggg
     4861 ggccgagaga acatcagagg caggtaggtt gcttgtggac agccttagac accaaatcct
     4921 tgcctctgga gtgtagccac acacaacaca gagagtaact gaagcctatc ttaagcaaag
     4981 agaaaccacc cgtccactct ggggctgccc tactgaatgc ccctttccag gaccttggta
     5041 ttccttctca ttcagtcccc agcacatccg gctaccccta gctctctcca cattcattcc
     5101 tcaagtctct catttacatg gtttgacttt ttaattctag tacttacaac ctttaatctt
     5161 ggtaactgtg gccaaatatc tattgttata catatctctg aatgtgcttg taagtggtta
     5221 aataatttgt aagcattttt gatctgtctg tctgtctcta catggatgga ctgaataaga
     5281 atgtaaataa tatttattgc aaagcaagcc tggtcatact tgctgcttga gaagctgagg
     5341 caggaggatc atgaattcaa agccagcctg ggatacatag caagtttcag ggcagtgtgg
     5401 gtatgaggtt gtgtctcaaa aacatttgaa agcatgttgt gcatgtgtga gagagtggcg
     5461 tggctggtct caggctgaca ctcgaagggt agtagaaata tcccttctgg cctattgtct
     5521 gcttcgctgt gtaggtagcc tgacttgaca gaggtttctc ctggttttcc ttgtttctac
     5581 ccagagaatt tcctactccc ctttccctcc aaatgttaag ggttttctcc cagaacagta
     5641 atggggctaa aggggcagtg agctccaaac agtcacagag tgaggagtct tctgagctcc
     5701 ctggctaagt gcagcgtgct agcagacagg caggggatgc aaacggctgc cgggccacct
     5761 ctcccctctc acaaaccata taaacacagg gaggggcttt ctcaccactt ctgaggagac
     5821 tgtacagccc gttttgtgcc tgtgtgtgtg ttcatggcct gtaagtgtac cccaagcact
     5881 gtgggcggga gctaccactt ctttgagaac ctctgcttta cggttgacac tgatgcttat
     5941 ctttctctgg agttacggat ttgcctgtgg atttaatgct cacaccatgc tatttaattt
     6001 ttaaagtaac ttttcagaaa atattactgg cgttttgttc attttaagac tgttaacatg
     6061 aagaaaagtg tgctagaact ttttaaaaac acataatgtc ttgaagttag aataaacact
     6121 aagaaatga
//
