LOCUS       XM_030248682            6962 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus PHD finger protein 21A (Phf21a), transcript
            variant X6, mRNA.
ACCESSION   XM_030248682
VERSION     XM_030248682.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030248682.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6962
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..6962
                     /gene="Phf21a"
                     /gene_synonym="80kDa; Bhc; Bhc80; BHC80a; D030065N23Rik;
                     mBHC80; PFTF1"
                     /note="PHD finger protein 21A; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 13 ESTs, 706 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 39 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:192285"
                     /db_xref="MGI:MGI:2384756"
     CDS             2220..4286
                     /gene="Phf21a"
                     /gene_synonym="80kDa; Bhc; Bhc80; BHC80a; D030065N23Rik;
                     mBHC80; PFTF1"
                     /codon_start=1
                     /product="PHD finger protein 21A isoform X3"
                     /protein_id="XP_030104542.1"
                     /db_xref="GeneID:192285"
                     /db_xref="MGI:MGI:2384756"
                     /translation="MELQTLQEALKVEIQVHQKLVAQMKQDPQNADLKKQLHELQAKI
                     TALSEKQKRVVEQLRKNLIVKQEQPDKFQIQPLSQSENKLQTAQQQPLQPLQQQQPQQ
                     PQQQQQQQQQHAQQSAAAPPSLTASQKTVTTASMITTKTLPLVLKAATATMPASVVGQ
                     RPTIAMVTAINSQKAVLSTDVQNTPVNLQTSSKVTGPGAEAVQIVAKNTVTLQVQATP
                     PQPIKVPQFIPPPRLTPRPNFLPQVRPKPVAQNNIPIAPAPPPMLAAPQLIQRPVMLT
                     KFTPTTLPTSQNSIHPVRVVNGQTATIAKTFPMAQLTSIVIATPGTRLPGPQTVQLSK
                     PSLEKQTVKSHPEAEEKQAESRTVTPPAAPKPKREENPQKLAFMVSLGLVTHDHLEEI
                     QSKRQERKRRTTANPVYSGAVFEPERKKSAVTYLNSTMHPGTRKRGRPPKYNAVLGFG
                     ALTPTSPPSSHPDSPENEKTETTFTFPAPVQPVSLPSPTSTDGDIHEDFCSVCRKSGQ
                     LLMCDTCSRVYHLDCLEPPLKTIPKGMWICPRCQDQMLKKEEAIPWPGTLAIVHSYIA
                     YKAAKEEEKQKLLKWSSDLKQEREQLEQKVKELSSSISKCMEMKSSILARQKEMRSSL
                     DKVKRLIRLVHGVDLCRPVDSEATAGALSNGPDCTPPANAASTPAPSPSSQSCTANCN
                     QGEETK"
ORIGIN      
        1 accccctggg atgctgtcgg ggggaagttt ttattatggt tatttaattt taaaaaatat
       61 ttttttggga aaaccatctt gtttggtgac tgagagatct ggtttaaaaa aaaaaaaaaa
      121 aagctgcggc tgctgacgct gccgggcccg agtgtgtgtg agtgagtgtg tgttggtgca
      181 tttgtcttgg gtggccggag cagcgttggg gaaattccgc ttattcttct tcttctgcaa
      241 cttgttattc cgaggagtcc gcctgcaccc ctcaccctgg ggcggccctc ccgccgtcgc
      301 cgccggccgg ccgccccggg accccgcgcg ggccggggac tcgcaggccc ctcagagagg
      361 ggccgcggcc gcccctcccc cccgggccgc ggggggaggg gcgcgcggag tgggactctt
      421 tccgtttggt ccagccccgc ggtgcacgca gttcccaaca cttctcgtca tcctctctct
      481 gctctcttta ttctgctgag cggtgctgtt aggatttctt tctctctctc tcttcgctcg
      541 ctctcttttt tttcctacct cctcttcctc ccttgaccac gctcgcaatg gtgggtagct
      601 gcaaggtggc cctggcaggg gaggggtttg atgtggacac tggggcaccg ggcgagagag
      661 gtctcctttc aactttgtct tgtggcttgc accccgggag gaggccacat gccgattgtg
      721 gggtgtagat gtgccgggag tgatttctaa gtagttgagt tgttgagatg agggtacgac
      781 ggctagtggt agacaggttt tgttttcgtg ggtgaattcg gtgtcatcat attccggtca
      841 tatgttgaaa tattctttgt ttaggtcttg aagtagagga tctccctctg cacgtccaca
      901 ttgtgttgtt tttaaatgat gtttccggga gtatggattt ctagaatcac aaatgtgatt
      961 ttaaggtctc ggcatgtgtg ggcctcagca ctggccttga cagtgaactt tatggctgtg
     1021 tttttggact tctaagattt tatcccatgg ctgggatgct cgttatgctt tttcttaatg
     1081 gtagataatc aggaatgtag agtcttgagc tgaggaagtt agagagggaa gggcatttat
     1141 ttattaataa ttgatagctg agtgttagaa tcagattcat ttgggctggt tgaaggtttt
     1201 tggttgttgt ttttcctccc ttttttcttt aaagttgtcc tgtactccag ggagcctttt
     1261 ggcaggcatt ctttctggtg gctctttggg ggcacggaga gggtgggtat caccttttag
     1321 agaggccgtc accatcatct gtagttttac tgaaggcagg cctgctcagg aggctgatat
     1381 tgaggctaag aagtggaggg ccacttttca gaaaagtatt tatgatgctt gtttacattt
     1441 catgtttgct cacatttggg cagtagaaat aaataggtca gcatttctat tggtctttga
     1501 aggttagccc ccccccaccc cctcaaagtt ttaccatcta cttggtttac agccttgtag
     1561 gaaagaatta ctgatttttc cctgggaata ctgttactta ttttaatttc gctcacaaag
     1621 gtttatggtg gtcacacttt ggacgcacgc aaatccttat ggagctggaa gaataataca
     1681 ttgcgaagac acctgcctgg gccgtacctt gttgtaaagg gataaaaagt gatggatggg
     1741 acaccgtgtc ctttggtttt caatggccca ccctttttcc tcttcaatta tctggaagga
     1801 gctgcttcag aaacactctt ctgtttacaa gaagatctct agcactatcc agcaggaggt
     1861 gctacaacaa gttaaagggg atcacttaat tttgagggtc tttttgaagt tctcttctta
     1921 ttgaagttct cttagctcag ctaagcaaca ggagtaacgt tccaggaaga ttttgaggga
     1981 ctggagagct gaaggagcgc cagcttctcc agaattggac ttctcagaac ctttaatatg
     2041 ctaatgtgca ttgtgaatct ccaagatggg gatatgatat gcagcattct tgaatacttc
     2101 taatgacagg gagcccacta cctcataagc tgcagcaaca agaggagctt gtaattttaa
     2161 acggaggctg aagacactgt agaattagca gacataagag agcgtggaga aggcagagga
     2221 tggagttgca gactctacag gaggctctta aagtggaaat tcaggttcac cagaaactgg
     2281 ttgcccaaat gaagcaggat ccacagaatg ctgacttaaa gaaacagctt catgaactcc
     2341 aagccaaaat cacagctttg agtgagaaac agaaaagagt agttgagcag ctgcgcaaga
     2401 acctgatagt caaacaagag cagccggaca agttccagat acagccattg tcacagtctg
     2461 aaaacaaact acaaacagca cagcagcagc cactacagcc actgcagcag cagcaaccgc
     2521 agcaaccgca gcagcagcag cagcagcagc agcagcacgc ccagcagtca gcagcagcac
     2581 cgcctagtct aactgcatca cagaagactg taactacagc ttctatgatt accacaaaga
     2641 cactacctct cgtcttgaaa gcagcaactg cgaccatgcc tgcctctgtt gtgggccaga
     2701 gacctaccat tgctatggtg accgccatca acagccagaa ggctgtgctc agcactgatg
     2761 tgcagaacac accagtcaac ctccagacgt ctagtaaggt cactgggcct ggggcagagg
     2821 ctgtccaaat tgtggcaaaa aacacagtca ctctgcaggt tcaagcaaca cctcctcagc
     2881 ccatcaaagt accacagttt atccctcctc ctagactcac tccacgccca aacttccttc
     2941 cacaggttcg acccaagcct gtggcccaga ataacattcc tatcgctcca gcgcctcctc
     3001 ccatgcttgc agctcctcag cttatccaga ggcctgtcat gctgaccaag tttacaccca
     3061 caaccctccc cacatcccag aattccatcc accctgtccg tgttgtcaat ggacagactg
     3121 caaccatagc caaaacgttc cccatggccc agctcaccag cattgtcata gctactccag
     3181 ggaccagact ccctggacct cagactgtac agcttagcaa accaagcctg gagaaacaga
     3241 cagttaaatc ccacccagaa gcagaggaaa aacaagcaga gagccgtacc gttaccccac
     3301 ctgctgcacc aaaaccaaaa cgagaagaga accctcagaa acttgccttc atggtgtctc
     3361 tagggttggt aacacatgac catctagaag aaatccaaag caagaggcag gaaagaaaga
     3421 gaagaacaac agcaaacccg gtgtacagtg gggctgtctt tgagccagag cgtaagaaga
     3481 gtgcagtcac ttaccttaac agcacaatgc atcctgggac gcggaagaga ggtcgtcctc
     3541 caaaatacaa tgcggtgctg gggtttggag cccttacccc aacatccccc ccatccagtc
     3601 atcccgactc ccctgaaaat gaaaagacag agaccacatt cactttccct gcacctgttc
     3661 agcctgtgtc tttgcccagc cccacctcca cagacggtga tatccatgag gatttttgca
     3721 gtgtttgcag aaaaagtggc cagttgctga tgtgtgacac gtgttcccgt gtgtatcatc
     3781 tggactgctt agagccgccc ctgaaaacaa ttcccaaggg catgtggatc tgtcccagat
     3841 gtcaggacca gatgctaaag aaggaagaag caattccttg gcctggaacc ttagccattg
     3901 ttcattccta catcgcctac aaagcagcaa aagaagagga gaaacagaag ctacttaagt
     3961 ggagttcaga tttaaaacag gagcgggaac aactggagca gaaggtcaaa gagctcagca
     4021 gttctataag taaatgtatg gagatgaaga gcagcatcct ggcgcggcag aaggagatgc
     4081 gcagctccct ggacaaggtg aagcggctca tccgccttgt gcatggcgtc gacctctgca
     4141 gacctgtgga ctcagaggcc acggcggggg ccctctccaa tggcccagac tgcactcccc
     4201 ctgccaacgc cgcctccaca cccgcccctt ccccctcctc gcagagctgc acagcgaact
     4261 gtaaccaggg ggaagagact aaataacaga gccctcgagg cggacatgcc acagtcctgg
     4321 tggcgaggag acgctagaag agcaaagccg gatttcttct ggaaagtaca gagttctttt
     4381 ggttctttgg ttccagagag agagaagatg cttgtgccag gtggcacccg agtttgccaa
     4441 ttgattcttg ttattctgtg tgtacatgca aagactggac catgttacat gaaatagtgc
     4501 cagctggagg ttctttgcca gcaccatgcc aagtgacata atatattact ctctctatta
     4561 tacaccagtg tgtgcctgca gcagcctcca cagccacggt gggttcgttt ttgttttgtt
     4621 gggtggggag cagggacggg cggagggagg agagcaggtt tcagatcctt actgggagcc
     4681 gtttgtttag gtagaaagac aagtccaaag agtgtgtggg ctttcctgtt cctaaacttt
     4741 tcactaccat aaaaccaaaa aacgaaaaaa aaagaaaaaa agataaaaaa ggaaatagag
     4801 atttaactaa cccagtgccc agaagaggga cgggaagggc tgggaggggg caagggtggg
     4861 aaagtatatg acataagcag tatttaacgt tcctggaggg gccgaagtgc aagaggagag
     4921 ccccgcccct ccctagctcg ccccgcccac agcctccagc agcccctccc ctctgcttgg
     4981 tgtagtgcag agcccgggtg gttctaggcc ttgttaagca gggaagggag ggtgcgaggg
     5041 gtccggaggg agaaaggcgg atcagaggtt tacttgaaaa caagctccat cccttttcta
     5101 tatttataag aagagaaggt tctaagcaga gcagcacgac ccaggtgtgt gtgaatggag
     5161 acaacccttt tctcttcttc aagtttattt tgtttctgtt cttgttttgt ttaaacaaag
     5221 ttttgttttg ttgtttattt ttcctttctt tctttctttc tttctttctt tctttctttt
     5281 taacaagaac taaaataaga aatagaaaag ctgttttttc aggctgacgg tcctgttgag
     5341 ggtagcggag accttgcatg atagagtagg cgtcatagtg tcaagtgagg tcggtgagtc
     5401 tgtgtgcgtc ctgtgtcatc agtcaggcac tgttctggtt tgtttgtttt gttttttact
     5461 ttctggtttt gttttctggt tttgtttttt gttttttcat gcaagggcaa aaaaaaaaat
     5521 ctttgtacct ggggaaaaca actttttttt tattaaaaag gaaaataaaa gatattgagg
     5581 tcttcctagt gttacttaaa ttaagatcaa ggtaagaaac attgtaaaaa ttacaaaagt
     5641 gctatttgtt tcctaaaaac agtgattttt attaaaaagg tgtcagaact ggagaaaacg
     5701 ctgtgtagtg acagtttttt agcacagagc ctactgatcc tgatgacatt ttactgtgtt
     5761 gtatctctag actggtgtgc cagtttcctg cagggccggg tccgccccct cctcgctcct
     5821 ccctactcag acttgctgtc tccttggtac agggatctca tctcctgttt gaagccaaaa
     5881 tggaatgtgc atagtgtcag ggcgttccca cggtctcaga ccttgctaga acgcaggctg
     5941 gtgcccacct agcccttccc ttggtgctgc tctgtcttac agccaccagc attacttatg
     6001 cctcgggggc cccttggggg actgaccagt gaggctcctc actgcctgta tacttggcct
     6061 ccaggagggt ataggatgca ggctggctgc atcagggagg aaatgctttg agagtccgta
     6121 tgtctctaag agcccaggta gccttcaagt ccatcttgcg ttaaagagag aaatctgaag
     6181 ctctaggggg tctctgcctg cccgccccaa ggtcagagtt cactcccatt ccactcactc
     6241 acatgcttcc tgggtgttcc tgggctagaa tcactatgct tgccttgtgt ggcctagtgt
     6301 agacttttct tcttggaaaa atggggttct gaaaggctct ctactcatct ccccgacaat
     6361 accataggga acataactct acgagacgca tgctcccagt ggaaatcttt atctgatcca
     6421 tgtccttgag tgaagggaca gagacctagg ctctaccccc aggtctgaaa gcagcatctc
     6481 tctgagcccg ccaggctccc aagtctagga gtagcaggaa agaccccttt gcttcttcct
     6541 tgcccagtta ggtccatgga aaatgagctg gatcctgact gaaactacag cagacaagag
     6601 gtgcttgtga gagtgagcca ggcccatcca caccagccac ccattcactt cccagcgttt
     6661 gagaagaggg caggtagtct ggccacacag gcctcagctt caggcctctg gcttcaggtt
     6721 gactgagggg agcagagaaa agccctcttt tcttatttag gaactaaggt gctgtctagt
     6781 tagcgggcgt tggagatgcc tggactagtt ggatctttgg cagaggatca gagaccagct
     6841 gcaggctgat atcctgtctc agctccccca acctgccaac cccctgttgg acttgtctgg
     6901 gcccataggc tggggcttgg cacatactac ctacctgtga tgggaagagg ttgacaagcc
     6961 at
//
