LOCUS       NM_001164289            1590 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus PHD finger protein 11C (Phf11c), mRNA.
ACCESSION   NM_001164289 XM_893468 XM_911460
VERSION     NM_001164289.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1590)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1590)
  AUTHORS   Zhang,Y., Dean,C., Chessum,L., Nguyen,D., Stewart,M., Taylor,M.,
            Cookson,W.O. and Moffatt,M.F.
  TITLE     Functional analysis of a novel ENU-induced PHD finger 11 (Phf11)
            mouse mutant
  JOURNAL   Mamm Genome 25 (11-12), 573-582 (2014)
   PUBMED   25091723
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC114007.6.
            
            On or before Aug 21, 2009 this sequence version replaced
            XM_911460.3, XM_893468.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EU155106.1, SRR13862051.1264266.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849383,
                                           SAMN00849387 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-483               AC114007.6         92664-93146
            484-591             AC114007.6         95203-95310
            592-722             AC114007.6         96777-96907
            723-772             AC114007.6         98780-98829
            773-840             AC114007.6         99828-99895
            841-904             AC114007.6         100646-100709
            905-1036            AC114007.6         101261-101392
            1037-1108           AC114007.6         102794-102865
            1109-1275           AC114007.6         104692-104858
            1276-1590           AC114007.6         105029-105343
FEATURES             Location/Qualifiers
     source          1..1590
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 31.48 cM"
     gene            1..1590
                     /gene="Phf11c"
                     /gene_synonym="EG628705; Gm6907; Phf11"
                     /note="PHD finger protein 11C"
                     /db_xref="GeneID:628705"
                     /db_xref="MGI:MGI:3648476"
     exon            1..483
                     /gene="Phf11c"
                     /gene_synonym="EG628705; Gm6907; Phf11"
                     /inference="alignment:Splign:2.1.0"
     CDS             259..1278
                     /gene="Phf11c"
                     /gene_synonym="EG628705; Gm6907; Phf11"
                     /note="PHD finger protein 11"
                     /codon_start=1
                     /product="PHD finger protein 11 family member"
                     /protein_id="NP_001157761.1"
                     /db_xref="CCDS:CCDS49512.1"
                     /db_xref="GeneID:628705"
                     /db_xref="MGI:MGI:3648476"
                     /translation="MALSQEEGPANFFKTRGATKHIKYVSVLTWLLFIGFCQLTEKME
                     KRTCALCPEGHDWSVIYFVPSANIAAHENCLLYSSGLVECEAHNPCKIARNVDVKSVL
                     ERIWRGSTMICSFCNNEGAIVRCGETSCAKNYHLFCAKEDYAVLQGGVTRTYKLFCPE
                     HPPQQEEATESADGPSMKRKRGRKKRLSSGPPAQPKVVKFMRSKRHVTGEPLGHRDAA
                     VKAPFLKKCKKAGLLNVLLEYILEKMNSIYGRLLDETASESDYEGIETLLFGCGLFKD
                     TLRKFQEVIKSKACEWEERQRLMKQQLEALADLQQSLCSFQENGDLDCSSSTSGSLLP
                     PEDHQ"
     exon            484..591
                     /gene="Phf11c"
                     /gene_synonym="EG628705; Gm6907; Phf11"
                     /inference="alignment:Splign:2.1.0"
     exon            592..722
                     /gene="Phf11c"
                     /gene_synonym="EG628705; Gm6907; Phf11"
                     /inference="alignment:Splign:2.1.0"
     exon            723..772
                     /gene="Phf11c"
                     /gene_synonym="EG628705; Gm6907; Phf11"
                     /inference="alignment:Splign:2.1.0"
     exon            773..840
                     /gene="Phf11c"
                     /gene_synonym="EG628705; Gm6907; Phf11"
                     /inference="alignment:Splign:2.1.0"
     exon            841..904
                     /gene="Phf11c"
                     /gene_synonym="EG628705; Gm6907; Phf11"
                     /inference="alignment:Splign:2.1.0"
     exon            905..1036
                     /gene="Phf11c"
                     /gene_synonym="EG628705; Gm6907; Phf11"
                     /inference="alignment:Splign:2.1.0"
     exon            1037..1108
                     /gene="Phf11c"
                     /gene_synonym="EG628705; Gm6907; Phf11"
                     /inference="alignment:Splign:2.1.0"
     exon            1109..1275
                     /gene="Phf11c"
                     /gene_synonym="EG628705; Gm6907; Phf11"
                     /inference="alignment:Splign:2.1.0"
     exon            1276..1590
                     /gene="Phf11c"
                     /gene_synonym="EG628705; Gm6907; Phf11"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1570..1575
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Phf11c"
                     /gene_synonym="EG628705; Gm6907; Phf11"
                     /note="hexamer: AATAAA"
     polyA_site      1590
                     /gene="Phf11c"
                     /gene_synonym="EG628705; Gm6907; Phf11"
                     /note="major polyA site"
ORIGIN      
        1 aatcaacttt tgctctccag tcctgtctct gcccgtagat atgtgcagct ctcagacatc
       61 atcagagaat ttctaaatgt tttattcatt tcagtaaggc ctctagaatg ttttcagtga
      121 tgccatagcc cacctttgtg ggcttgctct gtttctgttg acagcactgg tctagaaccc
      181 taataagagg ctgtactaca taagagatgc tatttttttc cgcacttaga ttgctgattt
      241 gttattattg taggagttat ggctctatca caagaagagg gtcctgccaa tttctttaag
      301 actagaggag ctaccaagca cataaaatat gtttctgttt taacctggtt gttatttata
      361 ggtttctgtc agcttacaga aaagatggaa aaaagaacat gtgccctctg ccctgaaggc
      421 catgattgga gcgtgatata ctttgtacca tcagctaata tagctgctca tgaaaactgt
      481 ttgctgtatt catcaggatt ggtggaatgt gaggcccata atccatgtaa aatagctaga
      541 aatgttgatg tgaaatcagt actggaaagg atctggagag gaagcacaat gatatgctcg
      601 ttttgtaata atgaaggagc catcgtaagg tgtggtgaaa catcttgtgc caagaattac
      661 cacttattct gtgccaagga ggactacgca gttctacaag gtggagttac aagaacttac
      721 aaattatttt gcccagaaca tcctccacaa caagaagagg ccactgaaag tgctgatggc
      781 ccaagcatga agaggaagag aggaagaaag aaacgcctct catcaggccc tcctgcacag
      841 ccaaaagtgg tgaaattcat gagatccaaa agacatgtga caggagagcc tctcggccac
      901 agagatgcag ctgtcaaagc tccttttctt aagaaatgca agaaagcagg acttcttaat
      961 gttttacttg aatacatact agaaaaaatg aattcaattt atggaagact cctggatgag
     1021 actgcctcag agtcagacta tgaagggatc gagaccttac tgtttggctg tggattattt
     1081 aaagacacac taagaaaatt ccaagaagta atcaagagta aagcttgtga atgggaagaa
     1141 aggcaaaggc tgatgaagca gcagcttgag gcacttgcag acttacaaca aagcttgtgc
     1201 tcatttcaag aaaatgggga cctggactgc tcaagttcta catcaggatc cttgctacct
     1261 cctgaggacc accagtaaaa gctgttcctc aggaaaactg gatggggcct ccatgttctc
     1321 caaggatcga ggaagtcttc ctgcctaccc tgcccacccc agtcaagggc agcaacacca
     1381 gagctttgct cagccttaaa tggaatctta gagctttctc ttgcttctgc tgctcctaaa
     1441 aatggtctca tcatggtctc ctctcagtat taataactcc atcagcatag agcagactca
     1501 accctatgca ttgctccctg ttaccctggg tttctgctca ctaccacatt gacaatattt
     1561 agcacactta ataaatgctt gtcaaaacca
//
