LOCUS       NM_172603               1371 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus PHD finger protein 11A (Phf11a), mRNA.
ACCESSION   NM_172603
VERSION     NM_172603.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1371)
  AUTHORS   Gong,Y., Handa,N., Kowalczykowski,S.C. and de Lange,T.
  TITLE     PHF11 promotes DSB resection, ATR signaling, and HR
  JOURNAL   Genes Dev 31 (1), 46-58 (2017)
   PUBMED   28115467
REFERENCE   2  (bases 1 to 1371)
  AUTHORS   Zhang,Y., Dean,C., Chessum,L., Nguyen,D., Stewart,M., Taylor,M.,
            Cookson,W.O. and Moffatt,M.F.
  TITLE     Functional analysis of a novel ENU-induced PHD finger 11 (Phf11)
            mouse mutant
  JOURNAL   Mamm Genome 25 (11-12), 573-582 (2014)
   PUBMED   25091723
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY162942.1 and EU155109.1.
            
            On Aug 20, 2009 this sequence version replaced NM_172603.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EU155109.1, AK077176.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849375,
                                           SAMN00849380 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-16                BY162942.1         1-16
            17-1371             EU155109.1         1-1355
FEATURES             Location/Qualifiers
     source          1..1371
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 31.48 cM"
     gene            1..1371
                     /gene="Phf11a"
                     /gene_synonym="4933417L10Rik; Phf11; Phf11l"
                     /note="PHD finger protein 11A"
                     /db_xref="GeneID:219131"
                     /db_xref="MGI:MGI:1918441"
     exon            1..79
                     /gene="Phf11a"
                     /gene_synonym="4933417L10Rik; Phf11; Phf11l"
                     /inference="alignment:Splign:2.1.0"
     CDS             37..918
                     /gene="Phf11a"
                     /gene_synonym="4933417L10Rik; Phf11; Phf11l"
                     /note="PHD finger protein 11"
                     /codon_start=1
                     /product="PHD finger protein 11A"
                     /protein_id="NP_766191.1"
                     /db_xref="CCDS:CCDS27169.1"
                     /db_xref="GeneID:219131"
                     /db_xref="MGI:MGI:1918441"
                     /translation="MAQEKPGCSNPVPNGDCPIIEKMEKRTCALCPEGHEWSQIYFSP
                     SANIVAHENCLLYSSGLVECEAPDLPNTVRNFDVKSVKKEIGRGRRLKCSFCKNKGAT
                     MGYDLQSCTKNYHLSCAMEDHAILQVDEDHGTYKLFCQKHAPEGQEPTQRDAAVKAPF
                     LKKCQEAGLLNVLLEYILEKMDLIHGRLLNETASESDYEGIETLLFGCGLFGDTLRKF
                     QEVINSKACEWEERQRLMKQQLEALADLQQNLCSFQENGDLDCSSSTSGSLLPPEDHQ
                     VRCQESPEVQAGSGDSL"
     exon            80..201
                     /gene="Phf11a"
                     /gene_synonym="4933417L10Rik; Phf11; Phf11l"
                     /inference="alignment:Splign:2.1.0"
     exon            202..309
                     /gene="Phf11a"
                     /gene_synonym="4933417L10Rik; Phf11; Phf11l"
                     /inference="alignment:Splign:2.1.0"
     exon            310..443
                     /gene="Phf11a"
                     /gene_synonym="4933417L10Rik; Phf11; Phf11l"
                     /inference="alignment:Splign:2.1.0"
     exon            444..493
                     /gene="Phf11a"
                     /gene_synonym="4933417L10Rik; Phf11; Phf11l"
                     /inference="alignment:Splign:2.1.0"
     exon            494..625
                     /gene="Phf11a"
                     /gene_synonym="4933417L10Rik; Phf11; Phf11l"
                     /inference="alignment:Splign:2.1.0"
     exon            626..697
                     /gene="Phf11a"
                     /gene_synonym="4933417L10Rik; Phf11; Phf11l"
                     /inference="alignment:Splign:2.1.0"
     exon            698..1354
                     /gene="Phf11a"
                     /gene_synonym="4933417L10Rik; Phf11; Phf11l"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1334..1339
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Phf11a"
                     /gene_synonym="4933417L10Rik; Phf11; Phf11l"
                     /note="hexamer: AATAAA"
     polyA_site      1354
                     /gene="Phf11a"
                     /gene_synonym="4933417L10Rik; Phf11; Phf11l"
                     /note="major polyA site"
ORIGIN      
        1 agaggcactt caaggactgc aagaccacac caagccatgg cccaagagaa gccagggtgc
       61 tctaacccag ttcccaatgg tgactgtcca atcatagaga agatggaaaa aaggacatgt
      121 gccctgtgcc ctgaaggcca tgagtggagt caaatatact tttcaccatc agcgaatata
      181 gttgctcatg aaaactgttt gctgtattca tcaggactgg tggagtgtga ggctcctgat
      241 ctacctaata cagttagaaa ctttgatgtc aaatctgtaa agaaagagat cgggagagga
      301 agaagattga aatgctcatt ttgtaaaaac aaaggagcca ccatgggata tgatttacag
      361 tcctgcacca agaattacca cttatcctgt gccatggaag accacgcaat tctacaagtt
      421 gatgaagatc atggcactta caaattattt tgtcaaaaac atgctccaga gggtcaagaa
      481 cccacacaac gtgatgcagc tgtcaaagct cctttcctta agaaatgcca ggaagcagga
      541 cttcttaatg ttttacttga atacatacta gaaaaaatgg atttgattca tggaagactc
      601 ctgaatgaga ctgcctcaga gtcagactat gaagggatcg agaccttact gtttggctgt
      661 ggattgtttg gagacacact aagaaaattc caagaagtaa tcaatagtaa agcttgtgaa
      721 tgggaagaaa ggcaaaggct gatgaagcag cagcttgagg cacttgcaga cttacaacaa
      781 aacttgtgct catttcaaga aaatggggac ctggactgct caagttctac atcaggatcc
      841 ttgctacctc ctgaggacca ccaggtcaga tgccaggagt ctcctgaagt gcaagcaggc
      901 tcaggagata gcctgtgaca gatccacagt gtcctccaac tctgacctgc tactgctcat
      961 ccatgctcca tacctgactg ggtgtttctt gtctcctctc ttctcatctc acttgtcctg
     1021 ctttcccctg atagtaaaag ctgctcctca ggaaaactgg atggggcctc catgttctcc
     1081 aaggatcgag gaagtcttcc tgcctaccct gcccacccca gtcaagggca gcaacaccag
     1141 agctttgctc agccttaaat ggaatcttag agctttctct tgcttctgct gctcctacag
     1201 atggcctcat catggtctcc actcagtatt aataactcca tcagcataga gcaaactcaa
     1261 cactgtgcat tgcacactga taccctgggt ttatgctcac tatcatacca gattgccaat
     1321 atttagcaca cttaataaat gcttgtcaaa accaaaaaaa aaaaaaaaaa a
//
