LOCUS       NM_177391               2745 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus PH domain containing endocytic trafficking adaptor 2
            (Pheta2), transcript variant 2, mRNA.
ACCESSION   NM_177391
VERSION     NM_177391.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2745)
  AUTHORS   Swan,L.E., Tomasini,L., Pirruccello,M., Lunardi,J. and De
            Camilli,P.
  TITLE     Two closely related endocytic proteins that share a common
            OCRL-binding motif with APPL1
  JOURNAL   Proc Natl Acad Sci U S A 107 (8), 3511-3516 (2010)
   PUBMED   20133602
REFERENCE   2  (bases 1 to 2745)
  AUTHORS   Carninci,P., Waki,K., Shiraki,T., Konno,H., Shibata,K., Itoh,M.,
            Aizawa,K., Arakawa,T., Ishii,Y., Sasaki,D., Bono,H., Kondo,S.,
            Sugahara,Y., Saito,R., Osato,N., Fukuda,S., Sato,K., Watahiki,A.,
            Hirozane-Kishikawa,T., Nakamura,M., Shibata,Y., Yasunishi,A.,
            Kikuchi,N., Yoshiki,A., Kusakabe,M., Gustincich,S., Beisel,K.,
            Pavan,W., Aidinis,V., Nakagawara,A., Held,W.A., Iwata,H., Kono,T.,
            Nakauchi,H., Lyons,P., Wells,C., Hume,D.A., Fagiolini,M.,
            Hensch,T.K., Brinkmeier,M., Camper,S., Hirota,J., Mombaerts,P.,
            Muramatsu,M., Okazaki,Y., Kawai,J. and Hayashizaki,Y.
  TITLE     Targeting a complex transcriptome: the construction of the mouse
            full-length cDNA encyclopedia
  JOURNAL   Genome Res 13 (6B), 1273-1289 (2003)
   PUBMED   12819125
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ162278.1, BY775160.1 and AK083325.1.
            
            On Dec 12, 2009 this sequence version replaced NM_177391.3.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Both variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK083325.1, BB654222.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849388, SAMN01164133
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-129               CJ162278.1         1-129
            130-367             BY775160.1         110-347
            368-2745            AK083325.1         343-2720
FEATURES             Location/Qualifiers
     source          1..2745
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 38.56 cM"
     gene            1..2745
                     /gene="Pheta2"
                     /gene_synonym="C920005C14Rik; Fam109b; IPIP27B; Ses2"
                     /note="PH domain containing endocytic trafficking adaptor
                     2"
                     /db_xref="GeneID:338368"
                     /db_xref="MGI:MGI:2443609"
     exon            1..93
                     /gene="Pheta2"
                     /gene_synonym="C920005C14Rik; Fam109b; IPIP27B; Ses2"
                     /inference="alignment:Splign:2.1.0"
     exon            94..2745
                     /gene="Pheta2"
                     /gene_synonym="C920005C14Rik; Fam109b; IPIP27B; Ses2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2696..2701
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pheta2"
                     /gene_synonym="C920005C14Rik; Fam109b; IPIP27B; Ses2"
                     /note="hexamer: ATTAAA"
     polyA_site      2721
                     /gene="Pheta2"
                     /gene_synonym="C920005C14Rik; Fam109b; IPIP27B; Ses2"
                     /note="major polyA site"
ORIGIN      
        1 gtttgcgacc tgggcggagg ccggggttca gagcgagaaa gcccaggggg cgacagcatc
       61 gcactcgacg ggccaggccc tcgggcgccg gagtgttttg atgtccaggt tctttttttt
      121 ttttttttta aatttttttg gtgaccctta taagactttt gagatgaaag gcaaggaaga
      181 ctagtccttc agctgaagtc tgagaactgc aggaacatgg tctgtaggag ccacaggact
      241 gggctgctgg tcttctgagc tgggtccttc cctgcgggtg ctaccatctc tctatctcac
      301 tgttctcgtg ggagccatga agctgaacaa gaggagtgtg gcccactatg cgctgagtga
      361 ttctccggca gaccacactg gctttctgcg tagttgggga ggaccaggtt ccccacccac
      421 tcccagtggc actggccgaa gatactggtt tgttctcaag ggcaatctgc tattctcttt
      481 cgagactaga gagagccggg tcccgctgag tcttgtggta ttggaaggct gcacggtgga
      541 gctggccgag gctcctgtac ccgaggagtt cgccttcgct attcgctttg atgcccctgg
      601 agtgcgccca cacctgctgg cagcagatgg gcaggctgcc caagaggcat gggtgaaggc
      661 actgtcccga gccagctttg gctacatgcg acttgtggtg cgagaattgg agagccagtt
      721 gcaggatgcc cgtcagagcc tggccttgca tcgctgtgca tcccagaggg ctgttgccaa
      781 ttgtagtaaa tctcaggctc ctgaccaccg agctccagac cctgagaacg gccactttct
      841 ccccagggac cgcagttcca ttggtactgt ggaagaaagg gggatccggc caataggtcg
      901 ggatttgacc gagtgggagt tacagggccc tgctagcctc ctcctaagca tgggacagag
      961 ccccgtgtcc cctgagagct cctgtttctc taccctgcat gactggtatg ggaaggagat
     1021 catggagctg aggcgagggt ggcagcaaag ggcaaaagga agccagacag agaacaagtc
     1081 acagaatagg ccctgagcca gagcccttta agctatggcc ctgtcctgct ggtcaggatg
     1141 ccggggtcag aacgtcaggg gttaaatatt tactcattta ccaggttgct ctgtgtgtgt
     1201 gtgtgtgtgt tcccctgctc tgtagacttt ctctagcttc cagatcctcc cctctcgctg
     1261 gcatgaactg aagaatcatg gctccctact tattttctga ggtctagaaa ggccaggtgg
     1321 ttgatgggaa gataatataa ttcaggaagt ggggctctgc tctctagcca taaagtccaa
     1381 cacaagaagt cttgggcatc tccatgccag aggtgacagg aagtggcttg aagactgaca
     1441 tcgttgtagc ttgggcaggg ctctctgtag gagaaggtct ttaggtgcta aagagggatt
     1501 tgttctctct cccgctgctg ccctgtccat gtatagtgct ggacattgcc cgcagggagg
     1561 caggcagcct tttatataga agacctgacc tgtcgtcatg gcaacttgta gggactcttg
     1621 ttacctagcc cgcttgttcc taaggcttgt ctgctgaggg ctctcatagc tactctgtcc
     1681 cgtgtcattc caagtatctt tttctttagc tctaaggtca gatggctagg tctacagagc
     1741 cagaaaccag gcccgtctgt cccctttata tagatgtagt gacagtggct gtggctcaat
     1801 agagatgtat accgttccca aacaaaattg gactcttcct gacctccctc ctttccctat
     1861 ctggggcctt gggccagcct gacccaaatc caacaaggcc taaaggctgg attttgcctc
     1921 caggagactg agttccatgg ttcctctggt cagggctatg tttctcaagc ctgcttgtaa
     1981 cctcatagcc agctgccctc actgtacaca caggtacctt tgctaagttt cttgtcacag
     2041 tagttagtgt ttgctctttt aatagttttg gtttttggag accaagtctt tgtagcccac
     2101 gcaggtctgg aactccttag catggcaatc tgctgggatt atagatagga gtgccacacc
     2161 tcacttggtt ttggtgtttg ttttgcagca ggacctggtg gaaggcctgt tagcctcccc
     2221 tccccccttc cctttataac cagaacggta aagttccccg gttggtagca aagaggtgga
     2281 ggaggatcag gagttcaaaa gcatccttga caacaccgcg agttttttgg ctagattggg
     2341 ctatgtgtga gaccctctca gaaagttaat tttggttatt acaatcaacg tgtttacaaa
     2401 tgaagaatca ggagcctgag ttgcaaagct ggtgtctgag gctaacaatt gagtccaaga
     2461 acctggcttg gtggtatgac ctccatcagg ccaatccgtc tatttgtttg ttccctagat
     2521 ctgtagggga agcccgctgt ccactgcacc cattgtacca atgtccacag aaaccatgag
     2581 ctatttattg ttaacttgat ttttttcgcc gcactacgta gctccggctg tcctggaact
     2641 tactggattt gaactcacag agatcctcct gcctctgcat cccaagtagt gtaagattaa
     2701 aggtgtgcgc cacttcgccc agctttttgt taactttttg ttacc
//
