LOCUS       NM_001364762            2424 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus peroxisomal biogenesis factor 12 (Pex12), transcript
            variant 2, mRNA.
ACCESSION   NM_001364762 XM_006531913
VERSION     NM_001364762.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2424)
  AUTHORS   Bustos,O., Naik,S., Ayers,G., Casola,C., Perez-Lamigueiro,M.A.,
            Chippindale,P.T., Pritham,E.J. and de la Casa-Esperon,E.
  TITLE     Evolution of the Schlafen genes, a gene family associated with
            embryonic lethality, meiotic drive, immune processes and
            orthopoxvirus virulence
  JOURNAL   Gene 447 (1), 1-11 (2009)
   PUBMED   19619625
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK035552.1 and AK041175.1.
            
            On Jul 4, 2018 this sequence version replaced XM_006531913.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13861890.151882.1,
                                           SRR7652917.96268.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-35                AK035552.1         2-36
            36-568              AK041175.1         2-534
            569-578             AK041175.1         536-545
            579-1300            AK041175.1         547-1268
            1301-2424           AK035552.1         1174-2297
FEATURES             Location/Qualifiers
     source          1..2424
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 50.3 cM"
     gene            1..2424
                     /gene="Pex12"
                     /note="peroxisomal biogenesis factor 12"
                     /db_xref="GeneID:103737"
                     /db_xref="MGI:MGI:2144177"
     exon            1..266
                     /gene="Pex12"
                     /inference="alignment:Splign:2.1.0"
     exon            267..504
                     /gene="Pex12"
                     /inference="alignment:Splign:2.1.0"
     CDS             379..1458
                     /gene="Pex12"
                     /note="peroxin-12"
                     /codon_start=1
                     /product="peroxisome assembly protein 12"
                     /protein_id="NP_001351691.1"
                     /db_xref="CCDS:CCDS25160.1"
                     /db_xref="GeneID:103737"
                     /db_xref="MGI:MGI:2144177"
                     /translation="MAEYGAHITTASVADDQPSIFEVVAQDSLMTAVRPALQHVVKVL
                     AESNPAHYGFLWRWFDEIFTLLDFLLQQHYLSRTSASFSEHFYGLKRIVAGSSPHLQR
                     PASAGLPKEHLWKSAMFLVLLPYLKVKLEKLASSLREEDEYSIHPPSSRWKRFYRAFL
                     AAYPFVNMAWEGWFLTQQLRYILGKAEHHSPLLKLAGVRLARLTAQDMQAIKQRLVEA
                     SAMQEPVRSVGEKIKSALKKAVGGVALSLSTGLSVGVFFLQFLDWWYSSENQEAIKSL
                     TALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSGYVFCYRCVFNYVR
                     SHQACPITGYPTEVQHLIKLYSPEN"
     exon            505..1058
                     /gene="Pex12"
                     /inference="alignment:Splign:2.1.0"
     exon            1059..2424
                     /gene="Pex12"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2404..2409
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pex12"
                     /note="hexamer: AATAAA"
     polyA_site      2424
                     /gene="Pex12"
                     /note="major polyA site"
ORIGIN      
        1 acattcgatg ctagagcgcc tgtcttccgc ccgccgtgtg gaggtcctcg gagcttctgt
       61 ttccgggtac ggtttcggtc acaaagccga gacctccttt cgcaggtggc gtcacgggtc
      121 ctctgctccg tgcccgaggt cagcaagcaa ggacgggcgc ttctcaggca gccgccggag
      181 ccgggcctcg cagctcccgg actgcggttc gagcgacacg tttcttggcc cactccccgc
      241 ctccgagtca cgctctgccc tgtgagtttc aggtgccatg cagaaggact aagactcagc
      301 acccgtttga tacaaaaaca agttcatgct cactagagtg ttcgtgggaa aagtgaatcc
      361 cagttcacac aagacacaat ggctgagtat ggggctcaca tcacaactgc ttcagtggcg
      421 gacgaccagc catccatctt tgaggtggta gcacaggaca gtttaatgac agcagtgaga
      481 cccgctcttc agcatgtggt caaggttctt gcagaatcaa atcctgcgca ctatggcttc
      541 ctctggcggt ggtttgatga aatcttcact ctgctagact tcctgctcca gcagcattat
      601 ctttctagaa ctagtgcctc attttctgaa cacttttatg gcttaaagcg gattgtggca
      661 gggagctcgc cgcatcttca gagaccggcc agtgctggtc ttcccaagga acacctctgg
      721 aaatctgcca tgttccttgt ccttcttccc tatctgaaag tgaagctaga gaagctggct
      781 tctagcttga gagaagaaga cgaatactct attcaccccc cttcttctcg ctggaaacga
      841 ttctacagag cctttctggc ggcctaccct tttgttaaca tggcctggga aggctggttt
      901 cttacacaac aactgcgtta catcttgggg aaagctgagc atcactctcc cctgctgaaa
      961 ctggctggag ttcggttagc tcgactgaca gctcaggaca tgcaagctat caaacagaga
     1021 ctggttgaag ccagtgcaat gcaggagccc gtcagaagcg ttggtgagaa gataaagtca
     1081 gctctgaaga aagctgtggg aggtgttgcc ttatccctct cgactggcct ctctgtgggt
     1141 gtattcttcc tgcagtttct tgactggtgg tactcttctg agaaccaaga agccatcaaa
     1201 tcactgactg ccctgcccac tccaccacca cctgtacacc tagactacaa ctctgattct
     1261 cccctcttac ccaaaatgaa aacagtgtgc ccactctgtc gtaaaactcg agtgaatgat
     1321 acggttcttg ccacctctgg ctatgtattc tgttaccgct gtgtgtttaa ttatgtgagg
     1381 agtcaccaag cctgtcccat tacagggtat ccaacagaag tccagcatct aattaaactc
     1441 tactctccag agaactgaaa gagcttagtg cattatctca ccactcaagt tctatactct
     1501 aaggccatga gacggtttta gtatggcaga caacagtgat acttccctga ttcataacta
     1561 cattaacttt aagtagttac atgggtttct ttaaaaggat atatccattc gatcctaacc
     1621 ttttggtttg ctctctacca agctggttaa gcaggagaat caggattatc ggtggtgtga
     1681 gagccaatgt ggaggtgagt tataaaagac cacctcactt aaagagtaag gttttaagtt
     1741 ggatgtggta gtatagtatc aacactctgg agatggaggc aggattttga gttcaaggcc
     1801 accataggga gactgtcaaa agtaaaatga aagtgagaga ctgattaaga gggataaaat
     1861 atcacaggaa acctcaggtt agaccttata aagcaagtgg tttgggaagc aggccttctc
     1921 tttagaaaac attacttttg aattagaggc tttatcagac atggactttc tctttataga
     1981 aatgctttag agaaaagccc cttccatcta tcatgactta ctaacatcta ccacagttta
     2041 tcagcatttg aagatttcct tgatgatcca tacttgtctt gggatagggt ttgtttatag
     2101 ggaggagtct ggaaatttca gtatgaatga aaactagcag gcaatggtga gatgcagtaa
     2161 aatccttatc taatgtttac ctgatgccta cctagtgaag agttaatgaa gggcagaagc
     2221 cttctgcttg ctctcatgag tttgctcaac tggcagtttg ctcagttgat atgaatcatg
     2281 ctaggtatta tgaaagtttc tatgaaacat ttaagtcaat tttaacaata catgattctg
     2341 ggaaagaatt gttccatgct gtcatgatta tgcggaaacc caaaagatta cttcaggggt
     2401 ttaaataaat ttccgttcag atca
//
