LOCUS       NM_027001               4148 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus PDZ and pleckstrin homology domains 1 (Pdzph1), mRNA.
ACCESSION   NM_027001 XM_885890 XM_896473 XM_896484 XM_917690 XM_925122
            XM_925124 XM_980421 XM_980454 XM_980485
VERSION     NM_027001.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4148)
  AUTHORS   Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen
            A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M,
            Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E,
            Mehmeti S, Dagand E, Schrinner S, Nurnberger A, Schmidt K, Metz K,
            Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe
            F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S,
            Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN,
            Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S,
            Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple
            CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P,
            Reymond A, Davidson DR, Dolle P, Antonarakis SE, Yaspo ML, Martinez
            S, Baldock RA, Eichele G and Ballabio A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT009564.11.
            
            On Mar 8, 2022 this sequence version replaced NM_027001.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC033350.1, SRR9219382.136007.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on single protein-coding
                                                transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-54                CT009564.11        121159-121212       c
            55-180              CT009564.11        117317-117442       c
            181-2502            CT009564.11        102808-105129       c
            2503-2694           CT009564.11        97178-97369         c
            2695-2862           CT009564.11        84198-84365         c
            2863-2964           CT009564.11        80102-80203         c
            2965-3075           CT009564.11        62281-62391         c
            3076-3254           CT009564.11        52432-52610         c
            3255-3412           CT009564.11        17871-18028         c
            3413-3455           CT009564.11        15723-15765         c
            3456-3642           CT009564.11        13768-13954         c
            3643-3778           CT009564.11        10470-10605         c
            3779-4148           CT009564.11        8671-9040           c
FEATURES             Location/Qualifiers
     source          1..4148
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 30.57 cM"
     gene            1..4148
                     /gene="Pdzph1"
                     /gene_synonym="2610034M16Rik"
                     /note="PDZ and pleckstrin homology domains 1"
                     /db_xref="GeneID:69239"
                     /db_xref="MGI:MGI:1916489"
     exon            1..54
                     /gene="Pdzph1"
                     /gene_synonym="2610034M16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            55..180
                     /gene="Pdzph1"
                     /gene_synonym="2610034M16Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             177..3878
                     /gene="Pdzph1"
                     /gene_synonym="2610034M16Rik"
                     /codon_start=1
                     /product="PDZ and pleckstrin homology domains 1"
                     /protein_id="NP_081277.2"
                     /db_xref="CCDS:CCDS37673.1"
                     /db_xref="GeneID:69239"
                     /db_xref="MGI:MGI:1916489"
                     /translation="MGTSQTSGQVCPQNVKDLEEDIKGHTSETVFHQTRTLGKLKENG
                     DENITASINGKQNSSFLVKNEKQAPSDSTIHKSMENGYTPPAISPQLEEVLPVAMFND
                     REKSLPGKITTEDFPNTVEVLKPAKGKFIREVKCGAFNVHVETTKSIFCKTGAQNLTK
                     RRCPTCHQHYSVQQVWRGSKSRGHFSKHRTVLAEEFKRRVPSTYRRGVSRSEVPSVNI
                     SIVGKEIMVEYISKKQNTFINICHPNSIGKLTKHRRGPLKHTTDEPCESASQPGINHP
                     ENQRLENQHQSSDAFHDAPCSVNAVQKENSDTIVVSLSSPPRREKEKPNTLPSAPDDS
                     EEGESATSPQKVLQITQDKPLEQHCFTADSCLPTSSETLRTTSLNNVDLSKMSLEDSR
                     DVDEERKNSSDVRENITPDSQVQPCTAGTNGPLSAVNSIIPIQDASGSEFSPLSFLTL
                     QLLGAKADNMGCRGEETLPGEGHESSNSLLFPVSEQAAKPSPLLSPSHRVSRCSEPVE
                     TTGNTFSFSQYIGVEREQEKVHYRLINKASLHNDSSSNIQPLERKDPQSPAVTIASCS
                     ILVPKSPLHGNIHSSVEWNQTEDHANHAERAGLSRMEVPVMASITNELEQSLATQNYK
                     ESTVDSNSPMAIRNPRESTSYLENVGDDASQALPVVKNMCHRNFEDLTRENQNEICSQ
                     MDFLQNSSESTSVGHTTEKLFLIDKTLASDDDSNSNRDHKTCGLNNFQQEPAECQRTT
                     SRVYCEESGNQRYPTEVSCHPVDILLSPQKQKALKDQNLEINNPRKLSQELALRGGRA
                     SDGSQEEAIEQWARRRQQFKDGKRCSSAGGSSVISNFTEGSITSDDVHSVDFGFRVDI
                     EEKGFYTENFHSTAWVFRGDDGNPEDSPRCLSKKPRPVAVRERTVRLFKGTGDYPWGF
                     RIQFSKPIVVTEVDTNSAAEEAGLQIGDVVLSVNGTEVTSVEHAEAVHLAKKGLDILT
                     MVVASDISRCPNTPWPTCRGYLHKRTHSGFVKGWRKRWFVLKHDGFLLYYKHRKDEGK
                     WPPLDMIKLEGAEVDIDNSLGKPFVFNCMPQSGSRILCLCATSNQEMKRWLEAMQRAA
                     RPVHQNHVWEDVTVHNSSLPPLAIKHPECLGLLHQLERSTDVWIQHYCILKDGCLYFY
                     ASIRSTQASGGLYLQGYSVSEQTHGFEQPVIELKPSSEEFKTFYFCAENKTENQRWIA
                     ALKTSIKKWLPLDQAIQEFMSRPLEETRM"
     exon            181..2502
                     /gene="Pdzph1"
                     /gene_synonym="2610034M16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2503..2694
                     /gene="Pdzph1"
                     /gene_synonym="2610034M16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2695..2862
                     /gene="Pdzph1"
                     /gene_synonym="2610034M16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2863..2964
                     /gene="Pdzph1"
                     /gene_synonym="2610034M16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2965..3075
                     /gene="Pdzph1"
                     /gene_synonym="2610034M16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3076..3254
                     /gene="Pdzph1"
                     /gene_synonym="2610034M16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3255..3412
                     /gene="Pdzph1"
                     /gene_synonym="2610034M16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3413..3455
                     /gene="Pdzph1"
                     /gene_synonym="2610034M16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3456..3642
                     /gene="Pdzph1"
                     /gene_synonym="2610034M16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3643..3778
                     /gene="Pdzph1"
                     /gene_synonym="2610034M16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3779..4148
                     /gene="Pdzph1"
                     /gene_synonym="2610034M16Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcattttatc aatgtttctt tcagagctga gcaattcgcg aaggctttac ccagaccctg
       61 acgcattaaa gttaccaaga tcctctggat gaattttcat tcacgctgtc caattctgcc
      121 tctttttgaa tggaagtttc tgagtcaaaa gcacttggtt catgcagaag aaaagaatgg
      181 gtacatctca gacatctggt caagtatgcc cccaaaatgt aaaagattta gaagaggaca
      241 tcaagggaca cacttctgag actgtgtttc atcagactag gacattaggg aaattgaagg
      301 aaaatggaga tgagaatata actgcttcta taaatggaaa acagaattcc tcttttcttg
      361 tcaaaaatga gaaacaagct ccatctgaca gcaccataca caagagtatg gagaatggtt
      421 acactcctcc ggccatctct cctcaactag aggaagtctt accagtggcc atgtttaatg
      481 accgtgaaaa atcgttacca gggaaaatta caacagagga tttcccaaac actgtagaag
      541 tcttaaagcc agccaaaggc aaatttatta gagaagtcaa atgtggtgct ttcaatgtac
      601 acgtggaaac cacaaaaagc attttctgta aaacaggagc acagaacctc acaaaaagga
      661 gatgtccaac atgtcaccaa cattattctg tccagcaagt atggagaggc tccaaatctc
      721 ggggtcactt ctctaaacac aggactgtac tggcagaaga atttaaacgt agggttccat
      781 ctacatacag aagaggggtt tctagaagtg aggtaccttc agtgaacata agcattgtag
      841 gaaaagaaat tatggttgaa tacataagta aaaaacagaa tacattcatc aatatatgtc
      901 atcctaatag cataggaaaa ttgacaaaac atagaagagg ccccttgaaa cacaccacgg
      961 atgaaccctg tgagtctgct tcacagcctg gcataaatca ccctgaaaat cagaggcttg
     1021 aaaatcagca ccagagttca gatgcttttc atgatgctcc ctgtagtgtt aatgctgtcc
     1081 agaaagagaa ttcagacaca attgtggttt ccctaagctc acctcccagg agagagaaag
     1141 agaaacccaa cacactgcct tcagccccag atgactctga agagggagag tctgctacct
     1201 ctccgcagaa ggtcttacaa attactcaag acaagcccct agagcagcat tgcttcacag
     1261 ctgactcttg ccttcctacc tcatctgaaa ccttaaggac cacgagttta aataatgtgg
     1321 atttaagtaa aatgtctttg gaggattcta gggatgtgga tgaagagaga aaaaacagtt
     1381 ctgatgtcag ggaaaatatc accccagatt cccaagtaca gccatgcaca gcaggaacaa
     1441 atggtcccct aagtgctgtg aatagcataa ttcccattca agatgcctca ggctctgagt
     1501 tttctccttt gtctttttta accttgcagc tcttgggagc aaaagcagac aacatgggct
     1561 gcagaggtga ggaaactcta ccaggagaag gacatgagag ctcaaattcc ctattgtttc
     1621 ctgtcagtga acaagctgca aaaccttctc ctttactcag tccgtcccac agggtcagca
     1681 gatgttcaga acctgtagag actactggga acacattttc ctttagtcaa tatattgggg
     1741 ttgagagaga gcaagagaaa gtacattaca gacttattaa caaggctagt ttacataacg
     1801 actcctcttc taacatacaa ccattagaaa ggaaggaccc acagagtcca gctgtcacga
     1861 ttgcatcctg cagcattcta gttccgaaga gcccacttca tggcaatatt cacagctctg
     1921 tggaatggaa tcaaacagag gaccatgcaa atcatgcaga gagggcaggc ctcagcagaa
     1981 tggaagtgcc agtcatggcc tccataacta atgagttaga gcagagcctc gctactcaaa
     2041 actacaaaga aagcacagtt gattctaact ctcccatggc aataagaaac cctagagagt
     2101 cgaccagcta tctggaaaat gttggagatg acgcaagcca ggcactacca gtggtgaaga
     2161 atatgtgcca cagaaatttt gaagacttaa ctagagagaa tcaaaatgaa atctgttctc
     2221 aaatggactt tctgcaaaat tcctctgagt ccacctctgt aggacacact acagaaaagc
     2281 tgtttcttat tgataagaca ctagccagtg atgacgattc aaacagtaac agagaccaca
     2341 aaacctgtgg actgaacaac ttccaacagg agccagcaga gtgccaaagg actacatcaa
     2401 gagtgtactg tgaggaaagt ggaaaccaaa ggtaccccac agaagtttcc tgccaccctg
     2461 tggacatact gttgtcacct cagaagcaga aggctctaaa agaccagaat ttggagatca
     2521 ataacccccg aaagctatcc caggaactgg ccctaagagg tggaagagcc agtgatggtt
     2581 cccaggaaga agcaatagag cagtgggcta ggcggaggca gcagttcaag gatggcaaga
     2641 gatgcagctc agctgggggc agttctgtca tcagcaactt cactgaaggc tcaatcactt
     2701 cagatgatgt tcattctgtg gattttggct ttcgagttga tatcgaagaa aaaggattct
     2761 acacggagaa tttccactca acagcatggg ttttccgagg cgatgatgga aatcctgaag
     2821 acagccccag gtgtcttagt aaaaagccaa gaccagtagc tgttcgtgag cggactgtga
     2881 gactattcaa aggaactggc gattatccct ggggatttcg gattcagttc tccaaaccaa
     2941 tcgtagtaac tgaagtggat accaatagtg ctgctgagga agctggactc cagattggag
     3001 acgtggtgct gtctgtcaat ggcactgagg tcaccagtgt tgagcatgca gaagctgtgc
     3061 accttgcaaa gaaaggtcta gacatcctga ctatggtggt agcatccgac atcagccgct
     3121 gtcccaatac cccgtggccc acctgccgtg gttacctgca taagaggact cactcaggtt
     3181 ttgtgaaggg ctggaggaag aggtggtttg tgttgaagca tgatggcttt ctcctctatt
     3241 acaagcacag aaaggatgaa gggaagtggc cacctctaga catgataaaa ttagaaggag
     3301 cagaagttga cattgacaac agcttgggaa aaccatttgt atttaactgt atgcctcagt
     3361 ctggaagtag aatactctgc ctctgtgcaa cctcaaacca agagatgaag aggtggcttg
     3421 aagcaatgca gagagcagcc cgtcctgtcc accagaacca tgtctgggaa gatgtcacgg
     3481 tgcacaacag tagcctccca cctcttgcta tcaaacaccc tgagtgtctg ggccttctgc
     3541 accagctgga gagaagcaca gatgtgtgga tccaacacta ctgcatcctg aaggatggct
     3601 gcttgtactt ctatgctagc attcgctcta ctcaggcgtc aggtggccta taccttcaag
     3661 gatacagtgt gagtgaacag acccatggct ttgagcaacc agtgattgaa ctcaagcctt
     3721 catcagaaga gttcaagact ttctatttct gtgcagaaaa taaaacagag aatcagcgct
     3781 ggattgcagc tttgaaaaca tctatcaaaa aatggcttcc cctggaccaa gccattcagg
     3841 agttcatgag tcgacctcta gaggagacca ggatgtgaag aaactcaaat taaaaagcca
     3901 gagtccacaa ggctgttccc agcttgagga aagaagcata gcatttcttt ctgctgtcct
     3961 gagacacagg gatcaaatga atctattcct tatgttttaa aacttggagc aactccctaa
     4021 tatcagtatt caagtactgc acttacatta aagcctaggc agcttggctt acatttgcat
     4081 cagcataacc tagttcccta ccttcagctc ttgaaagtat aaataaacat gtatttgtct
     4141 tcttttta
//
