LOCUS       NM_001040136            1615 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus PDZ domain containing 9 (Pdzd9), transcript variant 1,
            mRNA.
ACCESSION   NM_001040136
VERSION     NM_001040136.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Alvarez-Dominguez,J.R., Zhang,X. and Hu,W.
  TITLE     Widespread and dynamic translational control of red blood cell
            development
  JOURNAL   Blood 129 (5), 619-629 (2017)
   PUBMED   27899360
REFERENCE   2  (bases 1 to 1615)
  AUTHORS   Alvarez-Dominguez,J.R., Hu,W., Yuan,B., Shi,J., Park,S.S.,
            Gromatzky,A.A., van Oudenaarden,A. and Lodish,H.F.
  TITLE     Global discovery of erythroid long noncoding RNAs reveals novel
            regulators of red cell maturation
  JOURNAL   Blood 123 (4), 570-581 (2014)
   PUBMED   24200680
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK005921.1.
            
            On Apr 5, 2007 this sequence version replaced NM_001040136.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK005921.1, AK017019.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1615              AK005921.1         2-1616
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 64.9 cM"
     gene            1..1615
                     /gene="Pdzd9"
                     /gene_synonym="4930408O21Rik"
                     /note="PDZ domain containing 9"
                     /db_xref="GeneID:67983"
                     /db_xref="MGI:MGI:1915233"
     exon            1..178
                     /gene="Pdzd9"
                     /gene_synonym="4930408O21Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             148..948
                     /gene="Pdzd9"
                     /gene_synonym="4930408O21Rik"
                     /note="isoform 1 is encoded by transcript variant 1; PDZ
                     domain-containing protein C16orf65 homolog; PDZ
                     domain-containing protein 9"
                     /codon_start=1
                     /product="PDZ domain-containing protein 9 isoform 1"
                     /protein_id="NP_001035226.1"
                     /db_xref="CCDS:CCDS40110.1"
                     /db_xref="GeneID:67983"
                     /db_xref="MGI:MGI:1915233"
                     /translation="MEKGSLKSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVV
                     IQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTV
                     LQIKAYRGFLEIPQEWQDVYDLIPETKFPIPHTPKKTEPARESLVKDDHEEAVLDKKL
                     KYYRYPRSVWNHPVRTPISISTEWHGYEKKERTISVGRDINSDVVIHKDDKKELRAPS
                     PYWAMVEQDRAISSSSSSTANSSSSDAFWLEDYAQVEEGNGKQVSKFG"
     exon            179..358
                     /gene="Pdzd9"
                     /gene_synonym="4930408O21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            359..548
                     /gene="Pdzd9"
                     /gene_synonym="4930408O21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            549..1615
                     /gene="Pdzd9"
                     /gene_synonym="4930408O21Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1013
                     /gene="Pdzd9"
                     /gene_synonym="4930408O21Rik"
                     /note="major polyA site"
     regulatory      1471..1476
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pdzd9"
                     /gene_synonym="4930408O21Rik"
                     /note="hexamer: AATAAT"
     polyA_site      1511
                     /gene="Pdzd9"
                     /gene_synonym="4930408O21Rik"
     polyA_site      1517
                     /gene="Pdzd9"
                     /gene_synonym="4930408O21Rik"
ORIGIN      
        1 ctggtggcca ttcgaagaga tggacggatc gaggattccc cgtggcctga ggtcctcatc
       61 tggggtctcg aggattccaa actgttggaa gttgggacag attccagcct aggctttggg
      121 aggatcaaga gagccctgct ctgagcaatg gaaaagggct ctctcaaaag caaaaatgaa
      181 aaagaacaac tctccaaggc caaggcgtct gtaagcagct tgaacaaagt gattcagacc
      241 aaactcactg tgggcaacct gggattgggc ctggtcgtca tccagaatgg accctacctc
      301 cagattagcc acctcatcaa taaaggggcc gcagccagtg atggaatcct ccagccaggt
      361 gatgttctga ttagtgttgg acatgccaat gtgttaggat atacgctccg tgaattttta
      421 aagcttttgc aaaatatcac catagggaca gtgctacaaa ttaaggctta ccgaggcttt
      481 cttgaaatac cccaggaatg gcaagatgtg tatgatttga tccccgagac caaatttcca
      541 atcccacaca caccaaagaa aacggagccg gcaagagagt ctcttgtaaa ggatgaccat
      601 gaagaggcgg ttttagataa aaagctcaag tattacaggt accctcggtc agtctggaat
      661 caccccgtaa ggacaccgat ctccatctcc acagaatggc acgggtatga aaagaaggag
      721 cgcactatta gtgttggcag agacattaac tcggatgtag tcattcacaa ggatgacaag
      781 aaggaactga gggccccttc tccatactgg gcaatggtgg agcaagacag agccatctcc
      841 tcctcgtcct cctccactgc caattcttcc tcctcagatg ccttctggct ggaggattat
      901 gcacaggttg aggagggcaa tggtaaacag gtatcaaagt ttggttaggt attggtttgc
      961 aaatctgtgg ccatagaact ttttattttt aaacatccca tttttatgcc ttaccatggt
     1021 gttgatttgt agatttccta cacggatgac ctgctctcct ccgactacag aaaagccttc
     1081 ttccactagc agctcgggac ttgctgtggt ctcacaggca ggctctgcag acctgttctc
     1141 agagcccagc atcacttgct cagattttac agtgtcacta gaggaacctg cccaatcatc
     1201 agaatggctg aacatttgtc ttgtaaggta ccgttttcct tgaggtttta gactagttgt
     1261 ttacattaca acccctgccc ccaccctctc agtgatactt ttactgggaa tgtcaggact
     1321 gaaacaagca aggaagagac agaaggagtc agacacaaat gaaggaacca gctgagagga
     1381 tgttcttcag aaacgcaggt ttactgtaca tggggcaaaa tccaggctgt tcaagtgtta
     1441 aagttgtttt tattttaaaa agccaccagt aataatctgg aatttttact tttaaagctg
     1501 cttagcctca attttaacag tttctgaaat ttcttaattg atgtaattgg cgaactcaaa
     1561 aattactcta ttattgtttt ccttaaagca tttaataaat acttgctgac tgctt
//
