LOCUS       NM_001029868            3991 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus PDZ domain containing 4 (Pdzd4), transcript variant 1,
            mRNA.
ACCESSION   NM_001029868 XM_359337
VERSION     NM_001029868.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3991)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3991)
  AUTHORS   Katoh,M. and Katoh,M.
  TITLE     Identification and characterization of human PDZRN4L gene and mouse
            Pdzrn4l gene in silico
  JOURNAL   Int J Mol Med 13 (6), 923-927 (2004)
   PUBMED   15138636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL672094.11 and BC056462.1.
            
            On Mar 14, 2014 this sequence version replaced NM_001029868.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC056462.1, SRR7345562.3155974.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138, SAMN01164139
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-654               AL672094.11        87795-88448         c
            655-3991            BC056462.1         1-3337
FEATURES             Location/Qualifiers
     source          1..3991
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 37.41 cM"
     gene            1..3991
                     /gene="Pdzd4"
                     /gene_synonym="B230341P03; D130075J17Rik; Kiaa1444-hp;
                     LU1; Pdzk4; PDZRN4L; Pdzrnk4l; Xlu"
                     /note="PDZ domain containing 4"
                     /db_xref="GeneID:245469"
                     /db_xref="MGI:MGI:2443483"
     exon            1..688
                     /gene="Pdzd4"
                     /gene_synonym="B230341P03; D130075J17Rik; Kiaa1444-hp;
                     LU1; Pdzk4; PDZRN4L; Pdzrnk4l; Xlu"
                     /inference="alignment:Splign:2.1.0"
     CDS             629..2947
                     /gene="Pdzd4"
                     /gene_synonym="B230341P03; D130075J17Rik; Kiaa1444-hp;
                     LU1; Pdzk4; PDZRN4L; Pdzrnk4l; Xlu"
                     /note="isoform 1 is encoded by transcript variant 1; PDZ
                     domain-containing protein 4; PDZ domain-containing RING
                     finger protein 4-like protein"
                     /codon_start=1
                     /product="PDZ domain-containing protein 4 isoform 1"
                     /protein_id="NP_001025039.1"
                     /db_xref="CCDS:CCDS30214.1"
                     /db_xref="GeneID:245469"
                     /db_xref="MGI:MGI:2443483"
                     /translation="MGCNMCVVQKPEEQYKVMLQVNGKELSKLSQEQTLEALRASKEP
                     LVIQVLRRSPRLRGDSSCHDLQLVDSGTQTDITFEHIMALGKLRPPTPPMGILEPYVL
                     SELPPISHEYYDPAEFMEGGPQEAERMDELEYEEVELCKNSHQDKLGLMVCYRTDEEE
                     DLGIYVGEVNPNSIAAKDGRIREGDRIIQINGMDVQNREEAVAILSQEENTNISLLVA
                     RPESQLAKRWKDSDRDDFLDDFGSENEGDLRARKLKSPPVQQIGNDEKGAPDGGPGLN
                     NSQDLDSGVGRTDESTRNEESSEHDLLGDEPPSTTNTPGSLRKFGLQGDALQSRDFHF
                     SMDSLLAEGAGLGGADLPGLTDEEYERYRELLEIKCHLENGNQLGIFFSRASSGNSAL
                     DVNRNESLGHEMAMLEEELRHLEFKCRNILRAQKMQQLRERCMKAWLLEEESLYDLAA
                     SEPKKHELSDISELPEKSDKDSTSAYNTGESCRSTPLLVEPLPESPLKRSGAGNSNLN
                     RTPSGPPVTTHLKGAPSPGSPAKFRSLSRDPEVGRRQHTEERVRRSTKTSVTLERVGP
                     EGSPYLSRRHRGQEIEQYHSCVQLAPPRTLEDLGHGSLSLASGPRVGGVAAAAVEAPR
                     MEWKVKVRSDGTRYVAKRPVRDRLLKARALKIREERSGMTTDDDAVSEMKMGRYWSKE
                     ERKQHLIRAREQRKRREFMMQSRLECLREQQNGDSKPELNIIALSHRKTMKKRNKKIL
                     DNWITIQEMLAHGARSADGKRIYNPLLSVTTV"
     exon            689..942
                     /gene="Pdzd4"
                     /gene_synonym="B230341P03; D130075J17Rik; Kiaa1444-hp;
                     LU1; Pdzk4; PDZRN4L; Pdzrnk4l; Xlu"
                     /inference="alignment:Splign:2.1.0"
     exon            943..1033
                     /gene="Pdzd4"
                     /gene_synonym="B230341P03; D130075J17Rik; Kiaa1444-hp;
                     LU1; Pdzk4; PDZRN4L; Pdzrnk4l; Xlu"
                     /inference="alignment:Splign:2.1.0"
     exon            1034..1132
                     /gene="Pdzd4"
                     /gene_synonym="B230341P03; D130075J17Rik; Kiaa1444-hp;
                     LU1; Pdzk4; PDZRN4L; Pdzrnk4l; Xlu"
                     /inference="alignment:Splign:2.1.0"
     exon            1133..1195
                     /gene="Pdzd4"
                     /gene_synonym="B230341P03; D130075J17Rik; Kiaa1444-hp;
                     LU1; Pdzk4; PDZRN4L; Pdzrnk4l; Xlu"
                     /inference="alignment:Splign:2.1.0"
     exon            1196..1297
                     /gene="Pdzd4"
                     /gene_synonym="B230341P03; D130075J17Rik; Kiaa1444-hp;
                     LU1; Pdzk4; PDZRN4L; Pdzrnk4l; Xlu"
                     /inference="alignment:Splign:2.1.0"
     exon            1298..1408
                     /gene="Pdzd4"
                     /gene_synonym="B230341P03; D130075J17Rik; Kiaa1444-hp;
                     LU1; Pdzk4; PDZRN4L; Pdzrnk4l; Xlu"
                     /inference="alignment:Splign:2.1.0"
     exon            1409..3972
                     /gene="Pdzd4"
                     /gene_synonym="B230341P03; D130075J17Rik; Kiaa1444-hp;
                     LU1; Pdzk4; PDZRN4L; Pdzrnk4l; Xlu"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3944..3949
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pdzd4"
                     /gene_synonym="B230341P03; D130075J17Rik; Kiaa1444-hp;
                     LU1; Pdzk4; PDZRN4L; Pdzrnk4l; Xlu"
                     /note="hexamer: AATAAA"
     polyA_site      3972
                     /gene="Pdzd4"
                     /gene_synonym="B230341P03; D130075J17Rik; Kiaa1444-hp;
                     LU1; Pdzk4; PDZRN4L; Pdzrnk4l; Xlu"
                     /note="major polyA site"
ORIGIN      
        1 gcgcgcgcgt tccggtgttc caggcaggag ctggagacaa gcgaccggct gtgggccagg
       61 ctctgagaga gcgccgtgag ctagagaagc gggaccctgc gaggctacag ctggcgtggg
      121 cctggccgcc tctccgtcgg cgggccgggc cacgtcgcca agcccagagg ctggactccc
      181 ggggctgatg gccatgggcg ggagctggag acgacagcgg caaaggcagc ggcagcggcc
      241 ggccccgcgg gcggggagcc gtgtggccca cggcccctga cagcccctga cggccccggc
      301 gggcaggcgc gctcccgcgc ctcctggggt gggggggccg tagccaggca acgcccggcg
      361 cgcccgccca tcccccgccg cccttttttt cccctggctg ggtgcgaagg agcatgcctg
      421 tgtctggcct cggccagcaa agagttaagt cgagaggctt ggagctgcct tcctcttggg
      481 ggcgtgcccc cctcccccgc taggcggctc ggccccccgg ggtaaggtat ggccccgggc
      541 ccaggcccgg gacccgtggt cccacgcact ggccagtgaa agataccttc ctcttcccgc
      601 tctcctcttt ccctcgccgg ccagcatcat gggatgtaat atgtgtgtgg tccagaaacc
      661 ggaggagcag tacaaagtga tgcttcaggt gaacggaaag gagctctcca agctgtctca
      721 ggagcaaacc ctagaggccc tgcgtgcctc caaggagccc ctggtgatcc aggtgctgag
      781 acgcagcccc cgtctgcggg gggacagctc ctgccatgac cttcagctgg tggacagtgg
      841 cactcagacc gacatcacct tcgagcatat catggcgctg ggcaagctgc gcccgcccac
      901 cccacccatg ggcatcttgg agccgtacgt cctctctgag ctccccccca tcagccatga
      961 gtattatgac ccagcggagt tcatggaggg cggcccgcag gaggcagagc gaatggacga
     1021 gctggagtac gaggaggtgg agctgtgtaa aaacagccac caagacaagc tgggcctgat
     1081 ggtgtgctat cgcacagatg aggaggagga cctaggcatc tacgttggag aggtaaatcc
     1141 caacagcatt gcagccaaag atggccggat ccgtgaggga gacagaatca tccagattaa
     1201 tggaatggat gtccaaaatc gagaggaggc agtggccatc ctgagccagg aggagaacac
     1261 taacatctcc ctgctggtgg cccgacctga gagccagcta gcaaagcggt ggaaagacag
     1321 tgacagagat gacttcctag atgactttgg atctgagaat gaaggggacc ttcgtgctag
     1381 gaagctaaag tcacctcctg tccagcagat tggaaatgat gagaaggggg ctcctgatgg
     1441 gggcccaggc ttaaacaaca gccaggacct ggacagcggg gtgggtcgga ctgatgagag
     1501 tacccgcaat gaagagagct ctgaacatga cctgctgggg gatgaacctc ccagcaccac
     1561 caacactcct ggaagcctac gcaaatttgg tctacaaggg gatgccctac agagcaggga
     1621 cttccacttc agcatggatt ctctgttagc tgagggggca gggctgggag gggctgacct
     1681 acctgggctc actgatgagg agtatgaacg ctaccgggag ctgctggaga tcaagtgcca
     1741 cctggaaaat ggcaaccagc tgggcatctt cttctcccgg gcctccagtg gcaacagtgc
     1801 cctagatgtc aaccgcaatg agagcctagg ccatgagatg gccatgctgg aggaagagct
     1861 tcggcaccta gagttcaagt gccgcaatat cttgcgggca cagaagatgc agcagttgcg
     1921 ggagcgctgt atgaaggcct ggctgctgga ggaggaaagt ctctatgacc tggcagccag
     1981 tgagcccaaa aagcatgagc tgtctgatat ctctgaactg ccagagaaat cagacaaaga
     2041 tagcaccagc gcttacaaca cgggggagag ctgccgcagc actccacttc ttgtggagcc
     2101 tctgcctgag agcccgctga agcgatctgg tgctggcaat tccaacttga atcggacccc
     2161 ttctggccct cctgtcacca cccacctcaa gggggctcct tcaccaggga gcccagctaa
     2221 gttccgatca ctctctcggg atcctgaagt gggccggaga cagcacacag aagagcgtgt
     2281 ccgccggagc accaagacaa gtgttactct ggagcgtgtg ggccctgaag gcagccctta
     2341 cctctccagg cgccatcgtg gccaggagat tgagcagtac cacagctgtg tgcagttggc
     2401 cccgccacgc accctggagg atctgggcca tggctccttg agcttggcta gtggtcctcg
     2461 ggtgggtggg gtggcagctg cagctgtcga agcaccccgc atggagtgga aggtgaaggt
     2521 gcgaagtgat ggaacccgct atgtggccaa gcgacctgtg cgagatcggc tgctgaaggc
     2581 cagggccctg aagatccgag aggaacgcag tggtatgacc actgatgatg atgcagtgag
     2641 tgagatgaag atgggccgct actggagcaa ggaagagagg aagcaacacc tgatccgagc
     2701 acgggagcaa cggaagcggc gtgagttcat gatgcagagc cgtctggagt gtctaaggga
     2761 gcagcagaat ggtgacagca aacctgagct caacatcatt gcgctgagcc accgtaaaac
     2821 catgaagaag cgaaacaaga agattctgga caactggatc accatccagg agatgttggc
     2881 tcatggtgcc cgctcagctg atggaaaaag gatctacaac cctctgctct ctgtcaccac
     2941 tgtctgagct gctccagcag gagcccagcc caggtctaga aagcctgacc ctcaccctcc
     3001 cttagaatct agtgtgtgtc gatgtgtgtg cttgcacgat gtgctcatgc acactcctta
     3061 cctgtatgtt atgtgtgcac aggaccttgg taatagaaag ccccaagaag ggacacttct
     3121 cttacgccta gttccttttc cccaagaagc tatgctaaca accaacatag aggcataccc
     3181 ataaagggca cctctttgtg tatacacatg gtattcttgc tattttcttg gagacaggga
     3241 aatcagtgca gagaggtgag gtggactatc ctaagcacaa gagaatgtcc agcttcatgc
     3301 tgagcacgac ctctcccctc ctaggagctg caattatttg tagacaaagg caaccctgaa
     3361 ttttgtggtt tttcttcttt tctgtgcttg ccaatagttg ttttctgttt tgtgggcctg
     3421 ctctgggggc tggcagctcc tttaggcagc ctgacaaagg tggaccccac cgagtgctgg
     3481 ctggaaagga ggttgggggg aggaaaagag ggagggttgg gtgggaggga aaggaaaaag
     3541 atggggaaga ataaaaagca gctgtcctgg tggcctctag gggctctgcc ttggctttca
     3601 aggcttaacc atggaggccc acctctcttg ccagtgactg aaggaaagtg agatcacagg
     3661 gatttggggc acagtatcca tgcaaaagaa tctgtctatg ccatctggag cagagtcact
     3721 cttctcagtg gcttaagcaa ggagggccaa acctaatgag tctagagagg atgtggtggg
     3781 agttggaagg cctgggccca atgaaaggaa ggtgggctga ctgagagatg cctagaacct
     3841 tttccaggtg atggaacttt aaaatgtttg gtgcctgtca ggcttggtga agctcattgg
     3901 atgctacagg atgcccctgc tccccaccta catacacccc aagaataaag caagctgcct
     3961 ttttgctgtt aaaaaaaaaa aaaaaaaaaa a
//
