LOCUS       NM_001356384            1031 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus PDZ domain containing 11 (Pdzd11), transcript variant
            2, mRNA.
ACCESSION   NM_001356384 XM_006528302
VERSION     NM_001356384.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1031)
  AUTHORS   Shah,J., Rouaud,F., Guerrera,D., Vasileva,E., Popov,L.M.,
            Kelley,W.L., Rubinstein,E., Carette,J.E., Amieva,M.R. and Citi,S.
  TITLE     A Dock-and-Lock Mechanism Clusters ADAM10 at Cell-Cell Junctions to
            Promote alpha-Toxin Cytotoxicity
  JOURNAL   Cell Rep 25 (8), 2132-2147 (2018)
   PUBMED   30463011
REFERENCE   3  (bases 1 to 1031)
  AUTHORS   Guerrera,D., Shah,J., Vasileva,E., Sluysmans,S., Mean,I., Jond,L.,
            Poser,I., Mann,M., Hyman,A.A. and Citi,S.
  TITLE     PLEKHA7 Recruits PDZD11 to Adherens Junctions to Stabilize Nectins
  JOURNAL   J Biol Chem 291 (21), 11016-11029 (2016)
   PUBMED   27044745
REFERENCE   4  (bases 1 to 1031)
  AUTHORS   Nabokina,S.M., Subramanian,V.S. and Said,H.M.
  TITLE     Association of PDZ-containing protein PDZD11 with the human
            sodium-dependent multivitamin transporter
  JOURNAL   Am J Physiol Gastrointest Liver Physiol 300 (4), G561-G567 (2011)
   PUBMED   21183659
REFERENCE   5  (bases 1 to 1031)
  AUTHORS   Nishimura,M., Yokoi,N., Miki,T., Horikawa,Y., Yoshioka,H.,
            Takeda,J., Ohara,O. and Seino,S.
  TITLE     Construction of a multi-functional cDNA library specific for mouse
            pancreatic islets and its application to microarray
  JOURNAL   DNA Res 11 (5), 315-323 (2004)
   PUBMED   15747579
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB316786.1, AK007454.1, BX276129.7 and BP772832.1.
            
            On Oct 4, 2017 this sequence version replaced XM_006528302.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC004608.1, AK007454.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-10                CB316786.1         3-12
            11-342              AK007454.1         2-333
            343-343             BX276129.7         16334-16334         c
            344-835             AK007454.1         334-825
            836-1031            BP772832.1         27-222              c
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 43.72 cM"
     gene            1..1031
                     /gene="Pdzd11"
                     /gene_synonym="1810012H22Rik; 2310079D11Rik;
                     2700099C19Rik; Pdzk11"
                     /note="PDZ domain containing 11"
                     /db_xref="GeneID:72621"
                     /db_xref="MGI:MGI:1919871"
     exon            1..56
                     /gene="Pdzd11"
                     /gene_synonym="1810012H22Rik; 2310079D11Rik;
                     2700099C19Rik; Pdzk11"
                     /inference="alignment:Splign:2.1.0"
     exon            57..156
                     /gene="Pdzd11"
                     /gene_synonym="1810012H22Rik; 2310079D11Rik;
                     2700099C19Rik; Pdzk11"
                     /inference="alignment:Splign:2.1.0"
     CDS             70..492
                     /gene="Pdzd11"
                     /gene_synonym="1810012H22Rik; 2310079D11Rik;
                     2700099C19Rik; Pdzk11"
                     /codon_start=1
                     /product="PDZ domain-containing protein 11"
                     /protein_id="NP_001343313.1"
                     /db_xref="CCDS:CCDS30304.1"
                     /db_xref="GeneID:72621"
                     /db_xref="MGI:MGI:1919871"
                     /translation="MDNRIPYDDYPVVFLPAYENPPAWIPPHERVYHPDYNNELTQFL
                     PRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDF
                     QDIEHSKAVEILKTAREISMRVRFFPYNYHRQKERTVH"
     exon            157..240
                     /gene="Pdzd11"
                     /gene_synonym="1810012H22Rik; 2310079D11Rik;
                     2700099C19Rik; Pdzk11"
                     /inference="alignment:Splign:2.1.0"
     exon            241..297
                     /gene="Pdzd11"
                     /gene_synonym="1810012H22Rik; 2310079D11Rik;
                     2700099C19Rik; Pdzk11"
                     /inference="alignment:Splign:2.1.0"
     exon            298..396
                     /gene="Pdzd11"
                     /gene_synonym="1810012H22Rik; 2310079D11Rik;
                     2700099C19Rik; Pdzk11"
                     /inference="alignment:Splign:2.1.0"
     exon            397..457
                     /gene="Pdzd11"
                     /gene_synonym="1810012H22Rik; 2310079D11Rik;
                     2700099C19Rik; Pdzk11"
                     /inference="alignment:Splign:2.1.0"
     exon            458..1014
                     /gene="Pdzd11"
                     /gene_synonym="1810012H22Rik; 2310079D11Rik;
                     2700099C19Rik; Pdzk11"
                     /inference="alignment:Splign:2.1.0"
     regulatory      981..986
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pdzd11"
                     /gene_synonym="1810012H22Rik; 2310079D11Rik;
                     2700099C19Rik; Pdzk11"
                     /note="hexamer: AATAAA"
     polyA_site      1002
                     /gene="Pdzd11"
                     /gene_synonym="1810012H22Rik; 2310079D11Rik;
                     2700099C19Rik; Pdzk11"
                     /note="major polyA site"
ORIGIN      
        1 atccgcttcc ggttccgacg ccgaattggc tgtcgctgac cgaggccttc ttaccgggct
       61 ttgcctgaaa tggacaaccg gattccctat gatgactacc ctgtggtttt cctgccggcc
      121 tatgaaaacc ctccagcgtg gattcctcct catgagagag tgtaccaccc agactacaac
      181 aatgagttga cccagtttct gccccgaatt gttacactga agaagcctcc tggtgctcag
      241 ttgggattta acatccgagg aggaaaggcc tcgcagctag gcatcttcat ctccaaggtg
      301 attccagact cggatgcaca tcgagcagga cttcaagaag gggaccaagt tctagctgtg
      361 aatgatgtgg atttccaaga tattgagcac agcaaagctg tggaaatcct gaagacagcc
      421 cgagaaatca gcatgcgtgt gcgcttcttt ccctacaatt atcatcgcca aaaggaacgg
      481 actgtgcact agagacttgc agcccacagc cttccgtgtg ggatctgcca ggacaagctg
      541 gctagacctc tgagaagttg gagaagtcag gaaattgtac tctccacacc gtcctggttt
      601 agtggatggg gaggatgggg tgacggctta ccagctgtat tatgtactgt actgtactag
      661 gagttcccta gtttgctagg tgagtttcat tctggaaaag gagaaagata gtgatgtcta
      721 gatgcctgta gcctgtgggg aaaagccaac tagaaaacaa ctggcgttta tcaggtacct
      781 tagattggtc acttatacag ctaattttat tcgtagaaat cagtagaaaa aaaaagtctt
      841 gggaaccttc catctgattt gcctggccat gccatccagt ccttgtacat atataccttg
      901 gagtcccata cacttaggaa actccaagga gacacgtcct gctcatcccc gcccccaccc
      961 aaagtaaaaa cacaatactg aataaacgtg gcttgagtga tactactgct tgaaaaaaaa
     1021 aaaaaaaaaa a
//
