LOCUS       XM_006504115            5413 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus PDS5 cohesin associated factor A (Pds5a),
            transcript variant X1, mRNA.
ACCESSION   XM_006504115
VERSION     XM_006504115.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006504115.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5413
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..5413
                     /gene="Pds5a"
                     /gene_synonym="9030416H16Rik; B230308N11Rik;
                     E230024D05Rik"
                     /note="PDS5 cohesin associated factor A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 112 ESTs, 317 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 41 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:71521"
                     /db_xref="MGI:MGI:1918771"
     CDS             267..4268
                     /gene="Pds5a"
                     /gene_synonym="9030416H16Rik; B230308N11Rik;
                     E230024D05Rik"
                     /codon_start=1
                     /product="sister chromatid cohesion protein PDS5 homolog A
                     isoform X1"
                     /protein_id="XP_006504178.1"
                     /db_xref="GeneID:71521"
                     /db_xref="MGI:MGI:1918771"
                     /translation="MDFTQPKPATALCGVVSADGKIAYPPGVKEITDKITTDEMIKRL
                     KMVVKTFMDMDQDSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAP
                     EAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCN
                     EIFIQLFRTLFSVINNSHNTKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKN
                     LNKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDP
                     QLLLSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKDSDLATQNRPLWQCFLGRFNDI
                     HVPVRLESVKFASHCLMNHPDLAKDLTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLA
                     LVNDQLLGFVRERTLDKRWRVRKEAMMGLAQLYKKYCLHGEAGKEAAEKVSWIKDKLL
                     HIYYQNSIDDKLLVEKIFAQYLVPHNLETEERMKCLYYLYASLDPNAVKALNEMWKCQ
                     NMLRSHVRELLDLHKQPTSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKFNQVLGDDE
                     KLRSQLELLISPTCSCKQADVCVREIARKLANPKQPTNPFLEMVKFLLERIAPVHIDS
                     EAISALVKLMNKSIEGTADDEEEGVSPDSAIRSGLELLKVLSFTHPTSFHSAETYESL
                     LQCLRMEDDKVAEAAIQIFRNTGHKIETDLPQIRSTLIPILHQKAKRGTPHQAKQAVH
                     CIHAIFSNKEVQLAQIFEPLSRSLNADVPEQLITPLVSLGHISMLAPDQFASPMKSVV
                     ANFIVKDLLMNDRSTGEKNGKLWSPDEEVSPEVLAKVQAIKLLVRWLLGMKNNQSKSA
                     NSTLRLLSAMLVSEGDLTEQKRISKSDMSRLRLAAGSAIMKLAQEPCYHEIITPEQFQ
                     LCALVINDECYQVRQIFAQKLHKALVKLLLPLEYMAIFALCAKDPVKERRAHARQCLL
                     KNISIRREYIKQNPMATEKLLSLLPEYVVPYMIHLLAHDPDFTRSQDVDQLRDIKECL
                     WFMLEVLMTKNENNSHAFMKKMAENIKLTRDAQSPDESKTNEKLYTVCDVALCVINSK
                     SALCNADSPKDPVLPMKFFTQPEKDFCNDKSYISEETRVLLLTGKPKPTGVLGTVNKP
                     LSATGRKPYVRSAGTETGSNINANSELSPSAGSRSSREQSSEASETGVSENEENPVRI
                     ISVTPVKNIDTVKNKEINSDQSTQGNISSDRGKKRIVTAAGAENIQKPDEKVDESGPP
                     APSKPRRGRRPKSESQGNATKNDDLNKPVSKGRKRAAGSQESLEAGNAKAPKLQDGAK
                     KAVPAERQIDLQR"
ORIGIN      
        1 agtgtcgccc cggccggcgc acgctcggcc cgcttctccc cccgcggcgg ctgctcctcg
       61 gcaccgccag ccccagcgcc gctccggggc gggcgggcgg cggcggcggc ggcggcggga
      121 cggacggagc cgctttgtgt gcagcccgac gaggggcggc ggcggcggcg caaccacctg
      181 acagaggccc ggcgctcgct gcaccgtccg cccgcatgag gaggagaggc cggtagagga
      241 ctgtgagaga aaagttattc cccaggatgg acttcacgca gccgaagcct gccactgccc
      301 tctgtggcgt cgtgagtgcg gacgggaaga tcgcttaccc tccgggagta aaagagatca
      361 ccgacaagat caccaccgat gaaatgatca aacgtctgaa gatggtagtg aaaactttta
      421 tggatatgga tcaggattca gaagatgaaa agcaacagta tctcccacta gccttgcatc
      481 tcgcatctga attctttctc aggaacccta ataaagatgt gcgccttctc gtagcatgtt
      541 gtttggctga tatatttcga atctatgccc cagaagctcc atatacttcc catgataaac
      601 ttaaggacat atttctcttt attaccagac agttaaaagg tttggaggat acaaagagtc
      661 cacagtttaa tagatatttt tatttattag agaatttagc ttgggttaaa tcatataaca
      721 tctgctttga gttggaagat tgcaatgaaa tttttattca gctttttaga actctcttct
      781 cggtaatcaa caatagccac aatacgaaag tacaaatgca catgttagac ttgatgagtt
      841 ctatcatcat ggaaggtgat ggagttactc aagaattatt ggattccatt cttatcaacc
      901 tcatccctgc acacaagaac ttaaataaac agtccttcga ccttgcaaaa gtcctactga
      961 aaaggacagt ccagactatt gaagcatgta ttgccaattt tttcaatcaa gtcctggtgc
     1021 tgggcagatc atcagtcagc gacctgtctg aacacgtatt tgatctgatt caggaacttt
     1081 ttgctatcga tcctcagtta ctgttatctg tcatgccaca gcttgaattc aaactgaaga
     1141 gcaacgatgg tgaagaacgc ctagctgtgg ttcgactcct cgcaaaattg ttcggctcta
     1201 aagattcaga tttagcaaca cagaatcggc ctctctggca gtgctttctt gggcgattta
     1261 atgacattca tgttcctgtg aggttagaaa gtgtgaagtt tgccagccac tgtttgatga
     1321 atcacccaga cttagcgaag gatctgacag aatatttgaa agttaggtca catgatccag
     1381 aagaagccat tcgtcatgat gttattgtta ctataataac agctgccaaa agagaccttg
     1441 ccttagtaaa tgatcagttg cttggctttg tcagggaaag gacactggat aaacggtggc
     1501 gagtaagaaa agaagccatg atgggtctgg ctcagctcta taagaaatac tgtcttcatg
     1561 gggaagcagg aaaggaagcc gcggagaaag tcagctggat aaaggacaag ctgctgcata
     1621 tctactatca gaacagcatt gatgacaaac tattggtaga gaaaatcttt gctcagtatc
     1681 ttgttcccca caacctggaa acagaagaga gaatgaaatg cttatattat ttatatgcta
     1741 gcttggatcc aaatgctgta aaagctctca atgaaatgtg gaaatgtcag aacatgcttc
     1801 gaagtcatgt gcgtgaacta ttggacttac acaagcagcc tacatcagaa gcgaactgtt
     1861 ctgccatgtt tgggaaactg atgaccatag caaagaattt gcctgaccct ggaaaagcac
     1921 aagattttgt aaagaaattt aaccaggttc ttggtgatga tgagaaactg aggtctcagt
     1981 tggaattatt aatcagccca acctgttcat gcaagcaggc tgacgtttgt gtgagggaaa
     2041 tagctcggaa acttgcaaat cctaagcagc caaccaaccc ttttctagag atggtcaaat
     2101 ttcttttgga aagaattgct cctgtgcaca tcgattcaga agccataagt gcactggtaa
     2161 aactgatgaa taagtcaatc gaagggacgg ccgatgatga agaggagggt gtcagtccag
     2221 actcagccat ccgctcagga cttgagcttc ttaaggttct gtctttcaca catcctacct
     2281 cgttccactc tgcagagaca tatgagtcct tgttacagtg cctaagaatg gaggatgaca
     2341 aggtagcaga agctgcaata caaattttta gaaacacagg ccacaaaata gaaactgacc
     2401 ttccccagat acggtcaacc ttgatcccca ttttacatca gaaagccaag cggggcactc
     2461 cacaccaagc aaagcaggct gttcactgca tccatgccat cttctcaaac aaggaggtcc
     2521 agctggcaca gatttttgag ccactcagta ggagtctgaa tgctgatgta ccagagcaac
     2581 ttataactcc attagtttca ctgggccaca tttccatgtt agcaccagat cagtttgcct
     2641 ccccgatgaa atctgtagtg gcaaacttta ttgttaaaga ccttctaatg aacgacaggt
     2701 caacaggtga gaagaatgga aaattatggt ctccagatga ggaagtttct cctgaagttc
     2761 tagcaaaggt acaggcaatt aaacttctgg taaggtggct gttgggtatg aaaaacaacc
     2821 agtctaaatc tgccaactca actcttcggt tattatcagc catgctggtt agtgagggcg
     2881 acctgacaga gcaaaagagg atcagtaaat ctgatatgtc tcgcttgcga ttagctgctg
     2941 gtagtgccat aatgaagctt gctcaggaac cttgctacca tgaaattatt accccagaac
     3001 agtttcagct ctgtgcactg gttattaatg atgagtgcta ccaagtaagg cagatatttg
     3061 cccagaagct tcataaggca cttgtgaagt tgcttctccc actggagtat atggccatct
     3121 ttgctttgtg tgccaaagac cctgtgaaag aaaggagagc acacgctcgg cagtgtttgt
     3181 taaagaacat cagcatccgc agggagtaca tcaaacagaa ccccatggcc actgagaaat
     3241 tattgtcact gctgcctgaa tatgtggttc catacatgat tcacctccta gcccatgatc
     3301 ctgatttcac acggtcacaa gatgttgatc aacttcgtga tataaaagag tgcctgtggt
     3361 ttatgcttga agtcttaatg acaaagaatg aaaacaacag ccatgcattc atgaaaaaga
     3421 tggcagagaa tatcaagcta accagagacg cccagtctcc cgatgaatcc aagacaaatg
     3481 aaaaacttta tacggtttgt gacgtggctc tgtgtgttat aaatagtaaa agtgctttgt
     3541 gcaatgcaga ctcaccaaag gacccagtcc tcccaatgaa gttctttaca cagcctgaaa
     3601 aggacttctg taatgacaaa agctatattt cagaagagac aagagttctt ctgttaacag
     3661 gaaagccaaa gcctactgga gtattaggta cagtgaacaa gcctttatca gcaacgggaa
     3721 ggaagcctta tgttagaagc gccggcacag agactggaag caatattaac gccaattcag
     3781 agctgagtcc ttcagccgga agtcgttcaa gtagggaaca gagttcagag gcatcagaaa
     3841 ctggagttag tgaaaatgag gagaatcctg tgagaataat ttctgtcaca cctgtaaaga
     3901 atattgatac tgtaaagaat aaggaaatta attctgatca gtctacccaa ggcaacatca
     3961 gcagtgacag aggaaagaaa agaattgtaa cagcagctgg tgcagagaat atccaaaagc
     4021 cagacgagaa agtagatgag tcaggaccgc ctgccccttc caaaccccgg agaggacgtc
     4081 gccccaaatc tgaatctcag ggcaatgcaa ccaaaaacga tgatctaaat aaacctgtta
     4141 gcaagggaag gaaaagagct gcaggcagcc aggagagtct ggaggcaggg aatgccaaag
     4201 cgcccaagct acaagatgga gccaaaaagg cagttccagc agagagacaa attgatttac
     4261 aaaggtaaaa ggagaaaacg aaggccaaac agaagcagag tccaggttct gtaaaaactt
     4321 ggattccaat gtccccaaac agaaaacgaa gctcacttca aatacacact ttctgccttg
     4381 aaaactgaac gaagctagcc ttccttttta cacagcctaa gtcctctggt gaaatgtaca
     4441 gcagactcta gagaggctaa gagcatctct gttcttcccc tcccccagac ttttcctggg
     4501 aaaagtcaat aattaagcaa attgcttaac acttggttcc aggtcctgca tatctggaac
     4561 ttaaaggcat agtaaccatt ttttccatgc tgcagatttc attttagaga ggaacagggc
     4621 gtccattcac tgatgctgag aactggtcca tcctagagcc cagaaccccg tgccacacag
     4681 gcgagcaggt gtctactgaa ctgaggcttt acaagcgaga gagcagatga catatttctt
     4741 cgttttcctt ttggaaactt atgtattatt ctttctgcct gtctactttt ctgcaaaaaa
     4801 tgagatgtac agatttctgt tccctgctat gaaaagtaat gtggcaattt tataaatgtt
     4861 gctttctgat ttttatcaga atgagaaaat aattaaaatt attgatctgc aagtagtaaa
     4921 cacttcatat tatgatttct cccattttag tttaatataa tttgcaataa atgtacatat
     4981 tgtttcataa ggcatatcag tttagaatgg tttttactcc tgtgattatg atggaataat
     5041 tgggttttca gggagtaaag actgtccagg atttggtttt ataattgtca ccagattttt
     5101 attattaatg taaaaaaagg ttggttttgt ttttagggtt tgttttgttt ttttggaact
     5161 atcagtagat ggacactggc agctttgtga gggacagaga tatgctctcg acgtctggca
     5221 ccgtgctgtt gggaaatagg ccttttattt ttgtctgata attggggctc agtttttatt
     5281 tttattttac agacaactgt tacaatattg tattccttgg cattcattgt tcagcataga
     5341 tactgtgtac agtatttctg tgcacataat cctatttaat ttttgcataa aataaatgct
     5401 tttagatgtc tta
//
