LOCUS       NM_026513               1547 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus peptide deformylase (mitochondrial) (Pdf), mRNA;
            nuclear gene for mitochondrial product.
ACCESSION   NM_026513
VERSION     NM_026513.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB658019.1, AK008820.1, AV099506.2 and AI447856.1.
            
            On Aug 1, 2009 this sequence version replaced NM_026513.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BB658019.1, SRR1660811.468272.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-360               BB658019.1         1-360
            361-740             AK008820.1         1-380
            741-741             AV099506.2         699-699
            742-1297            AK008820.1         382-937
            1298-1547           AI447856.1         1-250               c
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 53.55 cM"
     gene            1..1547
                     /gene="Pdf"
                     /gene_synonym="2610019N19Rik"
                     /note="peptide deformylase (mitochondrial)"
                     /db_xref="GeneID:68023"
                     /db_xref="MGI:MGI:1915273"
     exon            1..554
                     /gene="Pdf"
                     /gene_synonym="2610019N19Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..712
                     /gene="Pdf"
                     /gene_synonym="2610019N19Rik"
                     /EC_number="3.5.1.88"
                     /note="peptide deformylase-like protein; polypeptide
                     deformylase"
                     /codon_start=1
                     /product="peptide deformylase, mitochondrial"
                     /protein_id="NP_080789.2"
                     /db_xref="CCDS:CCDS59743.1"
                     /db_xref="GeneID:68023"
                     /db_xref="MGI:MGI:1915273"
                     /translation="MLLLGRLPRPAWVPGSRAQRCSSLAALEGPARTRSYWRYLRRLV
                     CGAPQPPYAHVCQVGDPVLRVVAAPVEPEQLAGPELQRLVGRMVQVMRRRGCVGLSAP
                     QLGVPLQVLALEFPDKLLRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGC
                     ESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARIIQHEMDHLQGCLFIDKMDS
                     GTFTNLHWMEVND"
     exon            555..1537
                     /gene="Pdf"
                     /gene_synonym="2610019N19Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1518..1523
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pdf"
                     /gene_synonym="2610019N19Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1537
                     /gene="Pdf"
                     /gene_synonym="2610019N19Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggcgtctccc cgcgccatgt tgctgctggg caggctgccg cggccggcgt gggttccggg
       61 gagccgggcg cagaggtgca gctccttggc cgccttggag ggcccggcgc gcacgcgctc
      121 ctactggcgg tacctcaggc gccttgtatg tggcgcgccg cagccgccat acgcgcacgt
      181 gtgccaggtc ggggacccgg tgctgcgcgt cgtggcggcc ccggtggaac ccgagcagct
      241 agcggggccg gagctgcagc ggctggtggg gcggatggtg caggtaatgc gacggcgtgg
      301 ctgtgtgggc cttagtgcgc cgcagctcgg ggtgccgctg caagtgttgg cgctcgagtt
      361 cccggacaag ctcctccgag ccttctcacc gcgcctgcgc gaactgcgtc agatggaacc
      421 cttcccactt cgggtgctgg tgaaccccag tctgagagtg ttggacagcc gcttggtcac
      481 cttccccgag ggctgcgaga gtgtcgccgg ctttctggcg tgtgtgcctc gcttccaagc
      541 cgtgcagatc tcaggactgg acccaaaagg agagccagtg gtgtggtcgg caagtggttg
      601 gacagctcga atcatccagc atgagatgga tcacttgcag ggctgcttgt tcatcgacaa
      661 aatggacagt gggacattta ccaatctcca ctggatggag gtgaatgact aacactctcc
      721 ttgaattgag gatctggaaa tccagcatgc agactaagat ggtcacatct gtgcttcagc
      781 ttggaattgg ttccagtccg acagtagaca gtgtgtgctg gtctgagatg aagatgatag
      841 aaatgcttgc cctgaaatca gatctgacag aatacgatta cagcaggact acaaatgtac
      901 cattaaagga gtggctattt cctgacaatt tcccatggag aggagtgggc aggcaaacat
      961 cctctgtaca aatgagacac attctaaccc cacagcctac aattgattga taaggtaatc
     1021 cagatatcca aaagatttgt tttttgaaac agggtttctc tgtgtagcct tggctgtcgt
     1081 ggaactcact ctgtagacaa gctggcctca aacttaagag atatacctgc ctctgtactc
     1141 ctgagctttg ggactgaagg tgtatcacac tactgctgga cttgaaagtt gtcttaaaat
     1201 gcagtcttaa aagtctgagt gtggtggcac acctttaatt ccagcactct gttggcaatc
     1261 gtaggctaat gtttaaggcc atcaaaggaa catagtaaga ttctcttaaa agaaaaaaaa
     1321 agctcaagtc tggggtgata gctaggcagt taggttaaag agtgcttgct ttttttgcac
     1381 aacactagag ttcagttctg agcatttaca tcaatcaact cactacatct atacctccag
     1441 ctccagggaa ttaagtgccg cctcctggcc tctgcaggta ttgttttgtg tataaactta
     1501 cacagaaaca taattgaaat aaaatctaaa gaacaaaaaa aaaaaaa
//
