LOCUS       NM_026549               1306 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus programmed cell death 2-like (Pdcd2l), transcript
            variant 1, mRNA.
ACCESSION   NM_026549 XM_133378
VERSION     NM_026549.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1306)
  AUTHORS   Houston,B.J., Oud,M.S., Aguirre,D.M., Merriner,D.J., O'Connor,A.E.,
            Okutman,O., Viville,S., Burke,R., Veltman,J.A. and O'Bryan,M.K.
  TITLE     Programmed Cell Death 2-Like (Pdcd2l) Is Required for Mouse
            Embryonic Development
  JOURNAL   G3 (Bethesda) 10 (12), 4449-4457 (2020)
   PUBMED   33055224
  REMARK    GeneRIF: Programmed Cell Death 2-Like (Pdcd2l) Is Required for
            Mouse Embryonic Development.
            Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ087550.1, AK151495.1 and BX537302.12.
            
            On Feb 9, 2018 this sequence version replaced NM_026549.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK077948.1, BC115797.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-20                CJ087550.1         4-23
            21-1167             AK151495.1         2-1148
            1168-1306           BX537302.12        47838-47976         c
FEATURES             Location/Qualifiers
     source          1..1306
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 19.45 cM"
     gene            1..1306
                     /gene="Pdcd2l"
                     /gene_synonym="6030457N17Rik"
                     /note="programmed cell death 2-like"
                     /db_xref="GeneID:68079"
                     /db_xref="MGI:MGI:1915329"
     exon            1..135
                     /gene="Pdcd2l"
                     /gene_synonym="6030457N17Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             28..1122
                     /gene="Pdcd2l"
                     /gene_synonym="6030457N17Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     programmed cell death protein 2-like"
                     /codon_start=1
                     /product="programmed cell death protein 2-like isoform 1"
                     /protein_id="NP_080825.1"
                     /db_xref="CCDS:CCDS21137.1"
                     /db_xref="GeneID:68079"
                     /db_xref="MGI:MGI:1915329"
                     /translation="MAAVRKPVLLGLRDTAVKGCPKGPSAWTSSKLGGVPDALPAVTT
                     PGPQCGRCAQPLTLVVQVYCPLDGSPFHRLLYVFACARPGCGNSQTRSWKVFRSQCLQ
                     VPEKETWNAQNQSDSLAAENWCEGSQDWGSDTEETPPPPASDLGSDSNDVRALDWTEK
                     LQALRLQDTALAVTCPSPSGEGLTVPTAVPQFQPYYICVAEEEDYGSVVDLDHAHSLL
                     QEYQRREGVDMEQLLSLGSSDGDEKYEKTTVSSGDPTFYRFMKRIAACQEQILRYSWS
                     GEPLFLSCPTFEVSEVPACSGCGGQRTFEFQLMPALVSMLSSANLGLAVEFGTILVYT
                     CKQSCWPPNQQMPMEEFCVLQEDPDEFLFK"
     exon            136..302
                     /gene="Pdcd2l"
                     /gene_synonym="6030457N17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            303..363
                     /gene="Pdcd2l"
                     /gene_synonym="6030457N17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            364..734
                     /gene="Pdcd2l"
                     /gene_synonym="6030457N17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            735..842
                     /gene="Pdcd2l"
                     /gene_synonym="6030457N17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            843..991
                     /gene="Pdcd2l"
                     /gene_synonym="6030457N17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            992..1306
                     /gene="Pdcd2l"
                     /gene_synonym="6030457N17Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1146..1151
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pdcd2l"
                     /gene_synonym="6030457N17Rik"
                     /note="hexamer: ATTAAA"
     regulatory      1169..1174
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pdcd2l"
                     /gene_synonym="6030457N17Rik"
                     /note="hexamer: AATATA"
     polyA_site      1170
                     /gene="Pdcd2l"
                     /gene_synonym="6030457N17Rik"
                     /note="major polyA site"
     polyA_site      1189
                     /gene="Pdcd2l"
                     /gene_synonym="6030457N17Rik"
     regulatory      1285..1290
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pdcd2l"
                     /gene_synonym="6030457N17Rik"
                     /note="hexamer: TATAAA"
     polyA_site      1305
                     /gene="Pdcd2l"
                     /gene_synonym="6030457N17Rik"
ORIGIN      
        1 gcgctgtcac gtgggagccc agtagttatg gcggccgtca ggaagcctgt actgctggga
       61 cttcgagaca cggcggtgaa gggctgcccc aaagggccct ccgcctggac ctctagcaag
      121 ctgggtggcg ttccggacgc cctgccggcc gttaccactc cggggccgca gtgtggccgc
      181 tgcgcacagc cgctcacgct cgtcgtgcag gtgtactgcc cgctggacgg ctccccgttc
      241 catcggcttc tgtacgtgtt cgcctgtgct cgtccaggct gcggcaacag ccagacgcgc
      301 agctggaagg tgttccgttc ccagtgcctg caagtgccag agaaagagac ttggaacgcg
      361 cagaatcaga gcgatagcct tgcagctgag aattggtgtg aaggctcaca agactgggga
      421 agtgacactg aggagacgcc tccaccaccc gcctcagatt tgggaagtga ctctaatgat
      481 gtcagagcac tagactggac tgagaagctc caagctcttc gccttcagga cactgccctg
      541 gctgttacct gcccttctcc ttcaggggaa gggctgacag tccccactgc agtgccacag
      601 ttccagccct attatatctg tgttgctgaa gaggaggatt atggcagcgt tgtggatctt
      661 gatcatgcgc acagccttct gcaggagtac cagcggagag aaggggtgga catggagcag
      721 ctgctttccc taggctctag tgacggggat gaaaagtacg agaagaccac agttagcagt
      781 ggggatccaa cgttttatag gttcatgaag agaattgctg cttgccagga gcagattttg
      841 aggtattcgt ggagtggaga gcctctcttt ctgtcctgcc ccacatttga agtctctgag
      901 gtcccagcct gcagtggctg tggaggccag aggacgtttg agtttcagct tatgccagca
      961 ctggtcagca tgctcagcag tgctaatcta ggtcttgccg tggaatttgg aacgattctc
     1021 gtttacacat gtaaacagag ttgctggcct ccaaatcagc agatgcccat ggaagaattc
     1081 tgtgttctac aagaagaccc agatgaattt ttatttaagt agaacacttt gtcttattta
     1141 tacaaattaa agcaaatttt catattcaaa tatatatgtg tttaccttat tttagcatct
     1201 cccttccctt gagtcggggg tctcactata tgtatcccta gctggacttg aacttgtggc
     1261 actcctcctg cctcagactt agcatataaa attaactatt gtttat
//
