LOCUS       NM_053132               3506 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus protocadherin beta 7 (Pcdhb7), mRNA.
ACCESSION   NM_053132
VERSION     NM_053132.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3506)
  AUTHORS   Mancia Leon WR, Spatazza J, Rakela B, Chatterjee A, Pande V,
            Maniatis T, Hasenstaub AR, Stryker MP and Alvarez-Buylla A.
  TITLE     Clustered gamma-protocadherins regulate cortical interneuron
            programmed cell death
  JOURNAL   Elife 9, e55374 (2020)
   PUBMED   32633719
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3506)
  AUTHORS   Elbert A, Vogt D, Watson A, Levy M, Jiang Y, Brule E, Rowland ME,
            Rubenstein J and Berube NG.
  TITLE     CTCF Governs the Identity and Migration of MGE-Derived Cortical
            Interneurons
  JOURNAL   J Neurosci 39 (1), 177-192 (2019)
   PUBMED   30377227
REFERENCE   3  (bases 1 to 3506)
  AUTHORS   Junghans D, Heidenreich M, Hack I, Taylor V, Frotscher M and Kemler
            R.
  TITLE     Postsynaptic and differential localization to neuronal subtypes of
            protocadherin beta16 in the mammalian central nervous system
  JOURNAL   Eur J Neurosci 27 (3), 559-571 (2008)
   PUBMED   18279309
REFERENCE   4  (bases 1 to 3506)
  AUTHORS   Vanhalst K, Kools P, Vanden Eynde E and van Roy F.
  TITLE     The human and murine protocadherin-beta one-exon gene families show
            high evolutionary conservation, despite the difference in gene
            number
  JOURNAL   FEBS Lett 495 (1-2), 120-125 (2001)
   PUBMED   11322959
REFERENCE   5  (bases 1 to 3506)
  AUTHORS   Wu Q, Zhang T, Cheng JF, Kim Y, Grimwood J, Schmutz J, Dickson M,
            Noonan JP, Zhang MQ, Myers RM and Maniatis T.
  TITLE     Comparative DNA sequence analysis of mouse and human protocadherin
            gene clusters
  JOURNAL   Genome Res 11 (3), 389-404 (2001)
   PUBMED   11230163
REFERENCE   6  (bases 1 to 3506)
  AUTHORS   Wu Q and Maniatis T.
  TITLE     Large exons encoding multiple ectodomains are a characteristic
            feature of protocadherin genes
  JOURNAL   Proc Natl Acad Sci U S A 97 (7), 3124-3129 (2000)
   PUBMED   10716726
REFERENCE   7  (bases 1 to 3506)
  AUTHORS   Wu Q and Maniatis T.
  TITLE     A striking organization of a large family of human neural
            cadherin-like cell adhesion genes
  JOURNAL   Cell 97 (6), 779-790 (1999)
   PUBMED   10380929
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY245516.1, AK029340.1, BB080554.2 and AV363717.1.
            
            On Jun 6, 2007 this sequence version replaced NM_053132.2.
            
            ##Evidence-Data-START##
            Transcript is intronless :: AK034205.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-21                BY245516.1         2-22
            22-3102             AK029340.1         1-3081
            3103-3499           BB080554.2         279-675
            3500-3506           AV363717.1         233-239
FEATURES             Location/Qualifiers
     source          1..3506
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 19.47 cM"
     gene            1..3506
                     /gene="Pcdhb7"
                     /gene_synonym="Pcdhb4B; PcdhbG"
                     /note="protocadherin beta 7"
                     /db_xref="GeneID:93878"
                     /db_xref="MGI:MGI:2136741"
     exon            1..3506
                     /gene="Pcdhb7"
                     /gene_synonym="Pcdhb4B; PcdhbG"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3483..3488
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Pcdhb7"
                     /gene_synonym="Pcdhb4B; PcdhbG"
ORIGIN      
        1 ggaatcgctt gttgcaatac tgaacaaaag acgcaggcaa gagcttggca gacattacgg
       61 agctatgaaa gggtttggac aaagatatac tggattaata taagattaac aatgttaaga
      121 ttcctccaaa gaagaaatca gagttcagca tttcaaagct ttggaaattc taaaggattg
      181 gttgcaagca ctcaatggga cctcatggag aagctggaga aagctcaccc aaaaaggcaa
      241 gtaatcgctt ttatttttat gatggttttg gttcaggttt gcagtgagcc aacaactcaa
      301 tactctatct tagaggaaac agaaagtggc tcctttgtag cccacctggc caaggatctg
      361 ggtctgggag ctagggagct ggctgccagg tctgcacggg tggtgtctga tgattacaag
      421 cagagattgc tgctggatcc tgagactgga gatttgcttc tgagggagaa agtagaccgg
      481 gaggaggtgt gtagcactgt ggatccctgt gtgctgcatt tccaggtgac tcttgaaaag
      541 ccagtgcaat attttcaagg agaattattg atccaggaca taaatgatca tgctccagaa
      601 tttccagaag gggaaatgct attgaatata ccagaaaaca gccagccggg cactctgtta
      661 ccactgaatt tagcccagga cttggatgtg ggcagcaatg ggcttcaaca atacacagtc
      721 agccccaact ctcattttca tgtcctcact cgaaataata gcgagggcaa gaaataccca
      781 gagttggtgc aggacagagc cctggacaga gaggagcagg cagagctgag cttaaccctc
      841 atagctctgg atggagggtc tccaccgagg tcaggaacag ctctggttcg aatcctgatc
      901 atggacatca atgacaatgc tcctgagttt gtgaacagcc cctatgaggt gcaggtccta
      961 gagagcagtc tcccagactc cccagtcctg actgtcttcg cacaggatgc agatgctggc
     1021 aactttggga gagtttccta tggcttcttt caagcatcag atgaaatcca gagaacgttc
     1081 tcaataaaca aagtcacagg agaaatacaa ctgaaaaagg aattggattt tgaaaaaatt
     1141 aaattttacc atgtgaaaat tgaggccacg gatgggggag ggctttctgg gaaaggcttg
     1201 gtaatagtag aggtgttgga tgtgaacgac aatgccccag agctgaccat atcttcactg
     1261 accagctcag tcccagaaaa tgctcctgag acgatcataa gcatcttcag agttggagac
     1321 agggattccg gagagaatgc aaaggtggtt tgttctattc cagagaatct gccattcatt
     1381 ctaaaatcta ccttcaagaa tttctacact ctggtgacag agagccctct ggacagagag
     1441 agcagagctg aatacaacat taccatcatg gtctccgacc tgggcacacc caggctcaca
     1501 acatggcaca ccataacagt gcaggtgtcc gatgtcaacg acaatgcccc cgccttcacc
     1561 cgaacctcct acaccatgtt tgtccgcgaa aacaacagtc ctgccctgca cataggcacc
     1621 atcagtgcca cagattcaga ctcaggctcc aatgcccaca tcacctactc gctgctgctg
     1681 ccccatgatc cggagctgcc actctcctcg ttaatctcca ttaatgctga caacgggcag
     1741 ctgttcgcgc tcagggcgct ggactacgag gtcctgcagg ccttcgagtt ccacgtgggt
     1801 gccacagacc gcggctcatc tgcgctcagc agccaggctc tggtgcgcgt ggtggtgctg
     1861 gatgacaatg acaatgcgcc cttcgtgctc tacccgatgc agaacgcctc tgcaccctgc
     1921 acagagctgc tgcccagggc ggcagagcct ggatacctgg tcaccaaggt ggtggcagtg
     1981 gaccgcgact ctggtcaaaa tgcctggctg tcattccagc tgctcaaagc cacggagccc
     2041 gggctgttca gcgtgtgggc tcacaatggc gaggtgcgca ccagcaggct gctgagcgag
     2101 cgagatgcgc ccaagcacag gctgctgatg ctggtcaagg ataatggcga gcctccgcgg
     2161 tctgccagtg tcactcttca tgtgctgctg gtggatggct tttcccaacc ctacctctct
     2221 ctgcctgagg tggcgcccga ccccacacag gaagttgagg atgcgctcac tgtgtacctg
     2281 gttattgcct tggcatctgt atcttctctc ttcctcttgt ctgtggtgct tttcgtgggg
     2341 ataaagttgt gcaggagagc cagggaaccc tctctgggtg gctgctctgt gcctgaggaa
     2401 ctctttcctg gccacatggt ggatgtcagt ggcacaggga ccttgtccca caactatcaa
     2461 tatgaagtgt gtctgaccag ggactctggg attggtgagt tcaaattcct caaacccatg
     2521 atccccaacc tgttggttca agacgctggg agagaactta atgaaaatct tcattgcagg
     2581 gatagctttg tattcagtta agtcagagat tctcaacctg aggtttacaa cctcttgggg
     2641 gtcgaaggac tctctcgcca cgctcaccta agaccctcag aaaactcaga ttcttatgat
     2701 acacacaaaa cagtagcaaa ttttcactta tgaagtagca gcgaaagtaa tttcatggta
     2761 gggagttacc acaacactat gagctgtctt aaagcagtca gcatgaggga ggtcgagaac
     2821 cagtgagcta agtgatgtga tttcctaagt gttgtacaat tcttttcttt taagaaatga
     2881 tcttgtttct atgaagttct ccagtactct attctactta ttaatagtgc tcacagtttc
     2941 ttttttattg gtatgaaagt tctagccttt agttgtacta agcatagttc atgttttttc
     3001 ctccacctat gaatgatttt ggtgattagt actctgataa gcctaaataa actgtcttta
     3061 aatgaaattc ttagtggtct tataagacat ttcactcatc tgaaaaaaaa aacaaaaaca
     3121 aaaacaaaaa aaaaacttgc atttttgttt gtatttgtaa catccgccat ttggacgcag
     3181 ttgcctcttt ttaaaggtag agtgtttaaa attacttacg ttgcctgaat ctttctgcat
     3241 gaatagaaag cagcactatg tcatgttcac taccagttta agcgccctgg ttgtccaagt
     3301 cataaacttt aaggtgtaca tgaatgcaca caaaggttgt ggcccttttt gtttgtgagc
     3361 atcatgcatg gtagtggttc tgtttattgg ttgtgcatgt tctggatgta ctatggttag
     3421 ttttggattt ttatttgaca aaaattaaag agaatatgtg tagtttgtca tcctgtatat
     3481 ttaataaagc tcttaaatcg ctgctt
//
