LOCUS       NM_053137               3034 bp    mRNA    linear   ROD 14-OCT-2021
DEFINITION  Mus musculus protocadherin beta 12 (Pcdhb12), mRNA.
ACCESSION   NM_053137
VERSION     NM_053137.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3034)
  AUTHORS   Mancia Leon WR, Spatazza J, Rakela B, Chatterjee A, Pande V,
            Maniatis T, Hasenstaub AR, Stryker MP and Alvarez-Buylla A.
  TITLE     Clustered gamma-protocadherins regulate cortical interneuron
            programmed cell death
  JOURNAL   Elife 9, e55374 (2020)
   PUBMED   32633719
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3034)
  AUTHORS   Elbert A, Vogt D, Watson A, Levy M, Jiang Y, Brule E, Rowland ME,
            Rubenstein J and Berube NG.
  TITLE     CTCF Governs the Identity and Migration of MGE-Derived Cortical
            Interneurons
  JOURNAL   J Neurosci 39 (1), 177-192 (2019)
   PUBMED   30377227
REFERENCE   3  (bases 1 to 3034)
  AUTHORS   Vanhalst K, Kools P, Vanden Eynde E and van Roy F.
  TITLE     The human and murine protocadherin-beta one-exon gene families show
            high evolutionary conservation, despite the difference in gene
            number
  JOURNAL   FEBS Lett 495 (1-2), 120-125 (2001)
   PUBMED   11322959
REFERENCE   4  (bases 1 to 3034)
  AUTHORS   Wu Q, Zhang T, Cheng JF, Kim Y, Grimwood J, Schmutz J, Dickson M,
            Noonan JP, Zhang MQ, Myers RM and Maniatis T.
  TITLE     Comparative DNA sequence analysis of mouse and human protocadherin
            gene clusters
  JOURNAL   Genome Res 11 (3), 389-404 (2001)
   PUBMED   11230163
REFERENCE   5  (bases 1 to 3034)
  AUTHORS   Wu Q and Maniatis T.
  TITLE     Large exons encoding multiple ectodomains are a characteristic
            feature of protocadherin genes
  JOURNAL   Proc Natl Acad Sci U S A 97 (7), 3124-3129 (2000)
   PUBMED   10716726
REFERENCE   6  (bases 1 to 3034)
  AUTHORS   Wu Q and Maniatis T.
  TITLE     A striking organization of a large family of human neural
            cadherin-like cell adhesion genes
  JOURNAL   Cell 97 (6), 779-790 (1999)
   PUBMED   10380929
REFERENCE   7  (bases 1 to 3034)
  AUTHORS   Sago H, Kitagawa M, Obata S, Mori N, Taketani S, Rochelle JM,
            Seldin MF, Davidson M, St John T and Suzuki ST.
  TITLE     Cloning, expression, and chromosomal localization of a novel
            cadherin-related protein, protocadherin-3
  JOURNAL   Genomics 29 (3), 631-640 (1995)
   PUBMED   8575755
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ132664.1, BB617431.1, AY013773.1 and AV286502.2.
            
            On Jun 6, 2007 this sequence version replaced NM_053137.1.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-17                CJ132664.1         2-18
            18-182              BB617431.1         3-167
            183-2552            AY013773.1         1-2370
            2553-3034           AV286502.2         218-699
FEATURES             Location/Qualifiers
     source          1..3034
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 19.49 cM"
     gene            1..3034
                     /gene="Pcdhb12"
                     /gene_synonym="Pcdh3; Pcdhb5F; PcdhbL"
                     /note="protocadherin beta 12"
                     /db_xref="GeneID:93883"
                     /db_xref="MGI:MGI:2136747"
     exon            1..3034
                     /gene="Pcdhb12"
                     /gene_synonym="Pcdh3; Pcdhb5F; PcdhbL"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaatttcgg aagctttgga ggtggaagta attgggtagg gtttgtgtga tcatttggga
       61 agaaggcgtc tccctaattg gatttactcc aatatttgca cggaccctca cgagtggttg
      121 caatccactt gaagcagcac cttctggact gaatctgcac aacggagaca gcgctagcaa
      181 aaatgccagg gcaaaggcaa gtcttttttc ttactatatt gttgctgttt tggaagtctg
      241 actctgaggc aattagatat tccatgccag aagaaaagga gagtggctat ttggtggcaa
      301 acgtggcaaa agatctgggg ctcagggttg aagaactggc cactagagga gctcaaatcc
      361 attacagagg aaacaaagag ctcttgcaga tggatgcaga gactgggaat ttgttcttaa
      421 aggaaaaact agaccgggag gcactgtgtg gggcgacaga accctgtgtg ctgcacttcc
      481 agatcatact ggaaaaccct gtgcagttct tccaaactga actgcagctc actgatataa
      541 acgaccactc tccggagttc tctgacacgg aaatgcttct aacaattcct gagaacgccc
      601 agccagggac tgtgtttcct ctgaaggcag ctcatgactc tgacataggg agcaatgccg
      661 ttcagaacta cacagtcaat cccaacatcc atttccatgt ggttactctc agtcgctcag
      721 atggcaggaa atacccagag ctggtgctgg acagagccct ggacagggag gagcagcctg
      781 agctcacttt aaccctcact gctcttgatg gcggatcccc acccaggtca ggaaccaccg
      841 aagttcacat tgaagtcgtg gacatcaatg ataacgcccc ccagtttata cagtcactct
      901 atgaggtgca agttcctgag aacagtcccc tcaatgcctt agttgtcatg gtctctgcca
      961 cggacttaga tgctgggata tatggcaatg tcgcctattc tctgtttcaa ggggatggat
     1021 tatctcaacc atttgtaata gacaaaatca caggagaaat ccgtctgacc aaagagctag
     1081 atttcgaggt aagtcaccat tataccatag aaattgcagc caccgatgga gggggccttt
     1141 caggaaaatg cactgtggtt atacaggtgt tggatgtgaa tgacaacgcc ccagagttgg
     1201 cgatcaggaa gctcacagtc cctgtcccag aaaattccgc cgagactgta gttgctgttt
     1261 ttagtgtttc tgattctgat tcgggggaca acggaaggat agtgtgttct attcagaaca
     1321 atatcccatt tctcctgaaa cccacatttg agaattacta caccttagtg accgaggggc
     1381 cacttgatag agagagcaga gctgagtaca acatcaccat cactgtctgg gatttgggca
     1441 cacccaggct cacaacccag cacaccataa cagtgcaggt ggccgacatc aacgacaacg
     1501 cccctgcctt cacccaaaca tcctataccc tgtttgtgca agagaacaac agtcccgccc
     1561 tgcatatagg caccatcagt gccacagact cagattcagg ctccaacgcc cacatcacct
     1621 actcgctgct gccgccccac gattcacagc tggccctcgc ctcgctagtc tccatcaatt
     1681 cagacaatgg gcagctgttt gcgctcaggg cgatggacta tgagatgctt caggccttcg
     1741 aactgcacgt ggacgccaca gatggaggct cacctgcgct cagcagccag gccctcgtgc
     1801 gtgtggtagt gctagatgac aatgacaatt cacctttcgt gctctacccg atgcagaatg
     1861 cctcagcacc ctgtacggag ctattgccca gggcagcaga gcctggatac ctgatcacca
     1921 aagtggtggc tgtggatcgc gactctggcc agaatgcctg gctgtcattc caactgctca
     1981 aggctacaga gccagggctg ttcagtgtgt gggcgcacaa tggggaggtg cgcaccacca
     2041 ggctgctgag tgagcgcgat gctccaaagc acaagctgct gctgctggtc aaggacaatg
     2101 gcgatcctcc gcgctctgcc agcgtcacgc tgcacgtgct agtggtggat ggcttctcgc
     2161 agccttacct gcctctgcca gaggtggcgc gggattccac gcaggacgat tatgacgtgc
     2221 tcacgctgta cctagtcgtt gccttggcat ctgtatcttc tctcttcctc ttgtctgtgc
     2281 tgttgtttgt gggggtgaga ctgtgcagga gggccagggc agcctccctg ggtgattact
     2341 ctgtacctga gggacacttt cctagccacc tggtggatgt cagtagagca gggaccctgt
     2401 cccagagcta tcaatatgag gtgtgtctta atggaggtac tggaacaaac gagttcaatt
     2461 ttcttaaacc attgtttcct attcttccga cccaggctgc tgctgaagaa agagaaaatg
     2521 ctgttgtgcg caatagcgtt gaattctatt agaacatttg ttttgaagtg gtgacctcat
     2581 ttttccttaa ctctctctct ttctgatgta caattgtata gtgccatgag tcaactcttg
     2641 agatatatgt gtaatttatt ctttgttttg gatcagacta ttcagatgtg atcccactct
     2701 agaaaatttg gttctactgc tttgtgttag tttatatttc tattccatac cagtgcatgc
     2761 tggatttttt aaacaattat aattttgctt ttgtggggga cttatatttg ctgtaactgg
     2821 aactgctgtc attgttacag atgacttgtt tcgtttttgt tatttcagac agggtcttac
     2881 actatagccc tggctgacct gaaatgacta tgtacaaata gactttaaat ttgtggcagt
     2941 ccatctgctt ctgctgccct atgtccagat tatgagcatg aacaagtaga ctcagctgtg
     3001 gtgagatgcc tcaataaaaa tcaaatacta gttg
//
