LOCUS       NM_001122758            8676 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus protocadherin 7 (Pcdh7), transcript variant 1, mRNA.
ACCESSION   NM_001122758
VERSION     NM_001122758.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 8676)
  AUTHORS   Kim H, Takegahara N and Choi Y.
  TITLE     Protocadherin-7 Regulates Osteoclast Differentiation through
            Intracellular SET-Binding Domain-Mediated RhoA and Rac1 Activation
  JOURNAL   Int J Mol Sci 22 (23), 13117 (2021)
   PUBMED   34884920
  REMARK    GeneRIF: Protocadherin-7 Regulates Osteoclast Differentiation
            through Intracellular SET-Binding Domain-Mediated RhoA and Rac1
            Activation.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8676)
  AUTHORS   Bedogni F and Hevner RF.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 8676)
  AUTHORS   Kim H, Takegahara N, Walsh MC, Ueda J, Fujihara Y, Ikawa M and Choi
            Y.
  TITLE     Protocadherin-7 contributes to maintenance of bone homeostasis
            through regulation of osteoclast multinucleation
  JOURNAL   BMB Rep 53 (9), 472-477 (2020)
   PUBMED   32635982
  REMARK    GeneRIF: Protocadherin-7 contributes to maintenance of bone
            homeostasis through regulation of osteoclast multinucleation.
REFERENCE   4  (bases 1 to 8676)
  AUTHORS   Dasgupta K, Chung JU, Asam K and Jeong J.
  TITLE     Molecular patterning of the embryonic cranial mesenchyme revealed
            by genome-wide transcriptional profiling
  JOURNAL   Dev Biol 455 (2), 434-448 (2019)
   PUBMED   31351040
REFERENCE   5  (bases 1 to 8676)
  AUTHORS   Zhou X, Padanad MS, Evers BM, Smith B, Novaresi N, Suresh S,
            Richardson JA, Stein E, Zhu J, Hammer RE and O'Donnell KA.
  TITLE     Modulation of Mutant KrasG12D -Driven Lung Tumorigenesis In Vivo by
            Gain or Loss of PCDH7 Function
  JOURNAL   Mol Cancer Res 17 (2), 594-603 (2019)
   PUBMED   30409919
REFERENCE   6  (bases 1 to 8676)
  AUTHORS   Schubert SW, Lamoureux N, Kilian K, Klein-Hitpass L and
            Hashemolhosseini S.
  TITLE     Identification of integrin-alpha4, Rb1, and syncytin a as murine
            placental target genes of the transcription factor GCMa/Gcm1
  JOURNAL   J Biol Chem 283 (9), 5460-5465 (2008)
   PUBMED   18167345
REFERENCE   7  (bases 1 to 8676)
  AUTHORS   Vanhalst K, Kools P, Staes K, van Roy F and Redies C.
  TITLE     delta-Protocadherins: a gene family expressed differentially in the
            mouse brain
  JOURNAL   Cell Mol Life Sci 62 (11), 1247-1259 (2005)
   PUBMED   15905963
REFERENCE   8  (bases 1 to 8676)
  AUTHORS   Yoshida K, Hida M, Watanabe M, Yamaguchi R, Tateyama S and Sugano
            S.
  TITLE     cDNA cloning and chromosomal mapping of mouse BH-protocadherin
  JOURNAL   DNA Seq 10 (1), 43-47 (1999)
   PUBMED   10565544
REFERENCE   9  (bases 1 to 8676)
  AUTHORS   Yoshida K, Yoshitomo-Nakagawa K, Seki N, Sasaki M and Sugano S.
  TITLE     Cloning, expression analysis, and chromosomal localization of
            BH-protocadherin (PCDH7), a novel member of the cadherin
            superfamily
  JOURNAL   Genomics 49 (3), 458-461 (1998)
   PUBMED   9615233
REFERENCE   10 (bases 1 to 8676)
  AUTHORS   Messing A, Head MW, Galles K, Galbreath EJ, Goldman JE and Brenner
            M.
  TITLE     Fatal encephalopathy with astrocyte inclusions in GFAP transgenic
            mice
  JOURNAL   Am J Pathol 152 (2), 391-398 (1998)
   PUBMED   9466565
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK140356.1, AK165115.1, AK039737.1 and AC165316.4.
            
            On Jul 16, 2015 this sequence version replaced NM_001122758.1.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK039737.1, SRR1660815.128758.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3148              AK140356.1         2-3149
            3149-3618           AK165115.1         1108-1577
            3619-7338           AK039737.1         1-3720
            7339-8676           AC165316.4         165946-167283       c
FEATURES             Location/Qualifiers
     source          1..8676
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 31.65 cM"
     gene            1..8676
                     /gene="Pcdh7"
                     /note="protocadherin 7"
                     /db_xref="GeneID:54216"
                     /db_xref="MGI:MGI:1860487"
     exon            1..4198
                     /gene="Pcdh7"
                     /inference="alignment:Splign:2.1.0"
     exon            4199..4415
                     /gene="Pcdh7"
                     /inference="alignment:Splign:2.1.0"
     exon            4416..8676
                     /gene="Pcdh7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agatcccact gctccaacac gcgggccgaa tgcaggtgag ggaaggcacg gactctgcgg
       61 ctgagaatcc aaacttgggc accgcgcggt gcgcacggtt cggctctcgc ccccgcgggc
      121 gaatggttgc tgcggtttca ggcggcggct tcgtgactaa tgaccttgcg cagagttgtt
      181 aagaaaaaaa gagaaaccgg agctcttcgg ggtgagaagc gaccgactct gggcgtctct
      241 gaagatggct cgggctgctc tttggcgcgc cgggagcacc cggtcgcgga ccgagctgtg
      301 acgcgaggcg tcttttcgct gcaccttgcc cgaagcgacc tgccgtggaa tttttcattc
      361 aagatatgtt gagtggcttc ccggctgctt aagaggagtc agagttaaga ctggcttgtt
      421 gctcgcccca gagcctgaag caggaagcgg ttcaggtttg tctggacctc gggagcctaa
      481 acagagcctg ggtctagagt gagtagctgg aacgtgaatt ggacttaact cgagtagcag
      541 taaggactaa cgctgctgtc aggcggggaa ggctgcaggt ttgttctagt ccgctaccag
      601 gctccgccgc cctcttgcag aagcggttcc ggccccttcc cagggcttgg agactggatc
      661 tcagtatctt cccactgcgg ggatgacttt gtgggggcac cgagcccgtg gcgcgcagtg
      721 tcccgtgaac tgtgagtact gcgagtaaac ggtggccggc gagcgggcga ttagcaccca
      781 ttgcatgaat tatgaaacaa taactttcgg aagaagcagg aggagaaaaa aagaagcatc
      841 tctagctgcc cccctcccat cggccgactc tacgcgctac tctggccccc tccctcccct
      901 ccctctcgtt tcttcctttc ccggagagga ggaccgaggg gagggcaggc ggccagcccc
      961 ggaggagggg ggtgccgagg ggggttgtgg ttagaaggag cagtagcagc agcagcaaga
     1021 gaagatgctg aggatgcgga ccacgggatg ggcgcgcggc tggtgcttgg gctgttgtct
     1081 ccttctgccg ctctgcttca gcctggccgc cgccaagcag ctgctccggt accggctggc
     1141 cgaggagggc cccgccgacg tgcggatcgg caatgtggcc tcggacctgg gcatcgtgac
     1201 cggctccggc gaggtgactt tcagccttga gtctggttct gagtatctga agattgacaa
     1261 cctcaccggc gagctgagca ccagtgagcg gcgcatcgac cgagaaaagc tgccccaatg
     1321 tcagatgatc ttcgacgaga acgaatgttt cctggacttc gaggtgtcgg tgatagggcc
     1381 ctcacagagc tgggtggacc tgtttgaggg tcgggtcatc gtgctggaca tcaacgataa
     1441 cacgcccacc ttcccgtcgc cggtgctcac gctcacggtg gaggagaacc ggcctgtagg
     1501 cacgctctac ctgctgccca cggccaccga tcgtgacttt ggtcgcaatg gcatcgaacg
     1561 ctacgagctg ctccaggagc ccgggggtgg cggcggcagc ggcgagggaa ggcgcttggg
     1621 gccggcggac agcgccccct acccaggggg cggcgggaac agcgcgagcg gcggcggctc
     1681 tggaggctcc aagcggcggc tggacgcgcc tgagggtggc ggcgggacga gtcctagtgg
     1741 ccgaagcagt gtgtttgagc ttcaggtggc agacactcca gacggcgaga aacaaccgca
     1801 gctgatcgtg aagggggcgc tggaccggga gcagagagat tcctatgagc tgaccctccg
     1861 agtgcgcgat gggggcgacc cacctcggtc ttcgcaggcc atcttgcggg tgctcatcac
     1921 cgacgtgaat gacaacagcc cccgcttcga gaagagcgtg tatgaggctg acctggctga
     1981 gaacagcgct ccgggcaccc ccatcctaca gttgcgcgcc accgatttgg atgtaggggt
     2041 caatggacag atcgagtatg tatttggggc tgccaccgag tcggtaagac ggctactgcg
     2101 cctggatgaa acgtcgggct ggctcagtgt cttacaccgg atcgaccgcg aggaagtgaa
     2161 ccagttgaga ttcacagtaa tggcccgtga ccgcgggcag ccccccaaga ctgataaggc
     2221 caccgtagtc ctcaacatca aagacgagaa cgacaacgtt ccctccatcg aaattcgcaa
     2281 gatagggcgc atcccactta aggacggggt ggccaacgta gccgaagatg tcctggtgga
     2341 cacccccatc gccctggttc aggtgtccga ccgtgaccaa ggcgagaacg gggtagtcac
     2401 ctgtaccgta gtgggagacg ttcctttcca gcttaagcca gccagcgaca cagaaggcga
     2461 tcaaaacaag aaaaagtact tcctgcacac atcagcccca ctagactatg agaccacccg
     2521 ggagttcaac gtggtcatag tagctgtgga ctctggcagt cccagcctct ccagcaacaa
     2581 ttccttggtg gtcaaggtgg gagacactaa tgacaaccct cctgtctttg gccagtctgt
     2641 ggttgaggtt tactttccag agaacaacat tcccggggag agggtagcca cagtgctggc
     2701 gacagatgct gacagcggga agaatgcaga gatcgcctat tcactggact cctcagtgat
     2761 ggggactttt gccatcgatc ccgattctgg agacatcctg gtcaatacag tactggaccg
     2821 ggagcagact gacaggtatg agtttaaagt taatgccaaa gacaaaggca tcccagtgct
     2881 gcaaggcagc accacggtga ttgtacaggt ggctgataaa aacgacaacg accctaagtt
     2941 tatgcaagat gtctttacct tttatgtgaa ggaaaactta caacccaaca gccctgtggg
     3001 gatggtcacc gtgatggatg ctgacaaggg acggaatgca gagatgagcc tgtacataga
     3061 ggagaacagt aacatttttt ctattgaaaa tgacacaggg accatttact ccacaatgtc
     3121 ttttgacagg gaacatcaga ctacgtacac tttcagagtg aaggctgtgg atgggggaga
     3181 tcctcccagg tcggccacag ccacagtctc tctctttgtg atggatgaaa atgacaacgc
     3241 tcccacagtt acccttccca gaaacatttc ctacacgttg ctgccacctt caagtaatgt
     3301 caggacagta gtagctacag tgttagcgac agacagtgat gatggcatca atgcggactt
     3361 gaactacagc attgtgggag ggaatccttt caagctgttt gagattgatt ccaccagtgg
     3421 tgtggtttcc ttagtgggga aactcaccca gaagcattat ggcttgcaca ggctggttgt
     3481 gcaagtgaat gacagtggcc agccttccca gtccactacg actttggtgc atgtatttgt
     3541 caatgaaagt gtttccaatg caactgtaat tgactctcag atagtccgaa gtttgcatac
     3601 cccactcacc caggatatag ctggtgaccc aagctatgaa attagcaaac agagacttag
     3661 tattgtcatt ggggtggttg ctggcattat gacagtgatt ctaatcattt taattgtcat
     3721 gatggcaaga tactgcaggt ccaaaaataa aaatggctac gaagctggca aaaaagacca
     3781 tgaggacttt tttacacccc agcagcatga caaatctaaa aagcctaaaa aggacaagaa
     3841 aaacaaaaaa tctaagcagc cactctacag cagtatcgtc actgtcgaag cttctaaacc
     3901 aaatggacag aggtatgata gtgtcaatga gaagctgtca gacagcccaa gcatgggccg
     3961 ataccgatct gttaatggtg ggcctggcag tcccgacctg gcaaggcatt acaaatccag
     4021 ttccccattg cctactgtcc agcttcaccc ccagtcacca actgcaggga aaaaacatca
     4081 agctgtacaa gatctaccac cagccaacac atttgtggga gcaggagaca acatttcaat
     4141 tggatcagat cactgctccg agtacagctg tcaaacaagt aacaagtaca gcaaacagcc
     4201 atttcgtaga gtgacgtttt ctgttgtgag tcagcctcag gacccacatc aggggtcact
     4261 gcagagttgc tatgacagcg ggctggagga gtcagaaaca ccaagcagta agagttcatc
     4321 agggccaaga ctgggtgccc ttccactccc agaggacaac tatgagagga ccacgccgga
     4381 tggcagtgtt ggtgaggcag agcatatgga aaatgattca aggcctcttc cggatgtagc
     4441 gctgaccggc aagtgcaccc gtgaatgtga tgaatatggt cattcagact cctgctggat
     4501 gccagtgcgc acttccccag agaggaagaa gagccagccc aaactctcca ctttcatgcc
     4561 tgttgatgaa cgaggaagcc aggaaaagct ggccaatggc gaggctgcca tcatgggtga
     4621 ccgcaacaga aacctcctga acaaaaaatt gacctcatcc tatgagacct tcagtgcagc
     4681 tagtttcagc aaaaatgagg aagccaaccc tgaggatatt cctttaacaa aaacagggga
     4741 atataagcca tctcctgtca acactctcac tagaagagaa gtttatctgt aggttgtcaa
     4801 ggagcaacag caaagttctt ttcgtatatg aggagagtta ggggcaaaaa cattactaag
     4861 taaaaccatt taatcacaaa gagggggcta ccaaagagac aaagctttgc ctgccacttc
     4921 cgcctccaaa tcaggccttt agtgttactg tttgcctgat gacagtgtac aaagtagaat
     4981 ccattcttgt cacttgcatg tctacaccct tcactgatcc ccaacaccca ccctcttttc
     5041 cctacccctc ctcaaaccca aataacaaca aaacaacaac aacaaaagat ggttgcaagt
     5101 tcttttcatg gtaacaagtc tgattagcag aacataatac actctcatta cccctaatct
     5161 gaagcatgat tttggtcact ttgatttgct tgagtgtcat ctggcttgtt aataaaagaa
     5221 ggatgggtta aaaatatact acagactctc aatgctttat tattgttaaa gtcagcccat
     5281 tgaaattgat tttaaaaaat cactttaatg gtacagtcct tatgtagggg accctttgag
     5341 aaagtaattt agggtgacag cagtttaata ctataacaaa caaagagagt acatattaaa
     5401 actcagttga agaatgcagt tccaagctgc catatgttgt tattttcagg tcaaaggcat
     5461 cgatttctgt tccatacatt tacagaatat actcacccaa tcttgacaaa aaaattacat
     5521 gaattataat ttgtaaaagt atattttgga atagaatcac tcatgaatga acttgaactc
     5581 ttatgtcatt atgaggccaa agatcacatg gcagatcagg gaaataatta aattgatttg
     5641 gtcttgacat agaaatccac taaacaacag aaggaacctg tgcacacaca gaaacactca
     5701 gatgctagtt ggttttatat tttaactctt ctttcagaaa aagtcttctt tttaaaatga
     5761 actttaatta aatgctcaga aaatgaaaga actaactaga catgtgttgt cttataataa
     5821 gccactgatc aaagcccagg tctactctca tgtgttacag tcagggaaga ttctccattt
     5881 taacgtcata ttgatgcata gtgagataca agaagacaca ctgggatatg atttcatgag
     5941 ttctcctatt gtcatttctg gatcccagat gttcttggag atcttattat catttctaat
     6001 tataattgta tttttcacct ggccagaaca caagtgcatt gatttcaaat tctgtgcaat
     6061 acagaagcat tttgagactc aaacacttaa acaacataac actttaattg acatgtcata
     6121 ctgtaatttg actattattc aatgtgcgtc ttaaacaatc tctgaacatg aaagaatgag
     6181 ttccggacaa tattttattt aacacagtat atgcatctca aagttggaaa atgtatagtt
     6241 tttttcaaga gatacagaat atgcagattt ttgaatgctt tgctctatgc aagatgattt
     6301 aagaaaactg aaatttgagc tgggacattc agacgaatgt gacaatccat gatcaatata
     6361 ggggatgaca ggtaaagaga gcaaacgttc tcatcaccga atgctagtta cttggttaaa
     6421 ccatagcctt gatggctttc tacaaaactg tagagacact gtagctttgg gcagtttcat
     6481 gctttgcaga tttttcttag attataaggt gaagaaacct agactatagg ttgataattc
     6541 actgtaggtc atcaacgtac ttatctttga ggaacttttc tctggtgggt cttttgggat
     6601 catttcctta tgttctctct taaagtggaa ttttcatttt gatgttagtt tatgtataat
     6661 aggtagaaag gaaaaaatgt aattgatata aaaacattgg actaaaatac caataattga
     6721 acatgttcat gtttggttat tatttacact atggaaagat gaaaattcta gaactttgtt
     6781 aggaaactgc attcaagcag ttctgccttg tataatctgt aagtacctat taagacgaaa
     6841 tacttctaaa gatacttatg aaaatgtata catatttttc ttgcacgtta caaaggaaat
     6901 aattgcataa cactgatgtt caacactttt tatatgcata ttttctttct ttcatgggac
     6961 acttgaagcc actagatagc tcatttcact cttaaaatcc tttggttgtc tataaagcta
     7021 atacaggtca cactggacct tcagatttat tcaatccaca ttccacgatg acgtttgcac
     7081 cacatgccag gcagtcatgt cattgtcctt taacgtgtga acctctcttt agagctaaaa
     7141 atggatgtga aaagaataaa attcagtgta ctgtaagtat tcgaagtaat tctagtagaa
     7201 ttagttatca taacatgttt attatataat gagctggcat gacacagaaa tatattttgt
     7261 gtttgtatga cttttatttt gactaggtta aatctggtgc cactccatat atagagtgct
     7321 tttgaaaaaa aaataaaaac aaaaaaaata aataaatgag tgaatgcaag ataagcaact
     7381 gtgcctttta tacctcttgt tatggtaaac aagcaagcaa acaacaaata aacaaacaaa
     7441 tgaatggttg ttgggtttgg ataatgaggg gaaatgggct attcccagct tttttgatcc
     7501 tgtatattta tccatgttta ttttctgaga ataaataata tattaaaact ttgccttctg
     7561 tcaaactcag ataatggacc agtcttaaat attgttcttt cataaaataa gattcaggca
     7621 ttaatatggg gctgcttaaa tatcactgga cagtgaaatc attggttata gaatcacaca
     7681 gggaaatact atcgggtgaa atcagtccat tttttcaagt taggatattg atttaaaagt
     7741 tttgattgtt gttttctctc tttcaaatag tttttcattt ttggttgtac agtatataaa
     7801 ctctcttcgt tttctgtaca cagactctca agtggacttc tgcatgatag tacattagga
     7861 cacatttaca aattgagtaa ctatacaaac atatgtgtat ttaaatgtct gtctaaaatt
     7921 gactgctctg tgtgaatctc gagagagcat tgttgtctga tttttgtttt tttttccttt
     7981 ttttttttaa actggcctgt tgcctgagtt cctgaaaatg aaggaggcat tatttttatg
     8041 agagaaagaa ctaaggtggt acagaggatg tttgcctgaa aggctaccct gggagatcgg
     8101 gttagaggaa aatacaaaac gaaatacaca agccagaaag aaactgccag gaatcaaaca
     8161 gccatcttaa aacagttgtg caaaatctta agacctatga catctcaaac tatagattag
     8221 atcagtagta gataaatagc ggcctctttg aaataggaaa tgaaaggaac caagttcatc
     8281 agggctatga taaagctagt taattttgac ccaggcgtgg tgtatgtgac atctggatgg
     8341 ggcatcattc gttcagctac ctagggttta ctttcagaca acttttccta cactttaaag
     8401 cacttgcatt ccgtgtggta cgatctgttt gtaatgttaa tcattgacta ttgttctgct
     8461 acttggatgt tgatagtgaa gcagagaaca attaatcatc attgattatg tcactatgca
     8521 cgcgactttg ctaaacatga cgaaatgtat taaacactcg tccaactatt tatgaaatac
     8581 tttacataat ttaatttgct tttgtacagt tttctgtaaa taaattgctt gtcatttttg
     8641 tctttacaaa ttaaaatata acatgatcaa atggtt
//
