LOCUS       XM_017318005            5403 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus protocadherin 1 (Pcdh1), transcript variant
            X6, mRNA.
ACCESSION   XM_017318005
VERSION     XM_017318005.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000084.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_017318005.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5403
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="18"
     gene            1..5403
                     /gene="Pcdh1"
                     /gene_synonym="2010005A06Rik"
                     /note="protocadherin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 mRNAs, 6 ESTs, 145 long
                     SRA reads, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 15 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:75599"
                     /db_xref="MGI:MGI:104692"
     CDS             1666..4848
                     /gene="Pcdh1"
                     /gene_synonym="2010005A06Rik"
                     /codon_start=1
                     /product="protocadherin-1 isoform X4"
                     /protein_id="XP_017173494.1"
                     /db_xref="GeneID:75599"
                     /db_xref="MGI:MGI:104692"
                     /translation="MLGCVRRALTDREVLLILEPARMGPLRPSPGPGGQRLLLPPLLL
                     ALLLLLAPSASHTTQVVYKVPEEQPPNTLIGSLAADYGLPDVGHLYKLEVGAPYLRVD
                     GKTGDIFTTETSIDREGLRECQNQIPGNPCILEFEVSITDLVQNGSPRLLEGQIEVQD
                     INDNTPNFASPVITLAIPENTNIGSLFPIPLATDRDAGPNGVASYELQAGPEAQELFG
                     LQVAEDQEEKQPQLIVMGNLDRERWDSYDLTIKVQDGGNPPRASSALLRVTVLDTNDN
                     APKFERPTYEAELSENSPIGHSVIQVKANDSDQGANAEIDYTFHQAPEVVRRLLRLDR
                     NTGLITVQGPVDREDLSTLRFSVLAKDRGATPKSARAQVVVTVKDMNDNAPTIEIRGI
                     GLVTHQDGMANISEDVAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQLRQASETGS
                     DSKKKYFLQTTTPLDYEKVKDYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDNAPVFTQ
                     SITEVAFPENNKPGEVVAEVTASDADSGSNAELVYSLEPEPAAQGLFTISPENGEIRV
                     KTSLDREQRDSYELKVVAADRGSPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVMEN
                     MPALSPVGMVTVIDGDKGENARVQLSVEQDNGDFVIQNGTGTILSSLSFDREQQSTYT
                     FQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSNTSHRLLTPQTRLGETVSQVT
                     AEDIDSGINAELTYSIAGGNPYGLFQIGSHSGAITLEKEIERRHHGLHRLVVKVSDRG
                     KPPRYGTALVHLYVNETLANRTLLETLLVHSLDTPLDIDIAGDPEYERSKQRGNILFG
                     VVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPKPSGKAAKGSKSKGK
                     KSKSPKPVKPVEDEDDTGLQKSLKFNLMSDAPGDSPRIHLPLNYPPGSPDLGRHYRSN
                     SPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDYSYRTNPPKYP
                     SKQVGQPFRLSTPQPPPHPYHGAIWTEVWE"
ORIGIN      
        1 tttgctcagc tcactcaggc gcttccagct cgtcgcggac acttggaaga gccacatcac
       61 agacacatac acacatacat tcacccgtac atatgtgagc acagacatac ctcccgcaca
      121 ccagcgccca ctggggcaca gtcaccagct cagaagctgc ttcggcgcct gcacgatcag
      181 cagcgggcac acacaagccg tggccataga tagctacaac acaatcgggt gtgatactga
      241 gcaatgccag acacacaaac acaacctcgt gccttcctgt acgaatgtaa ctgcctcggt
      301 tcgccagatg aacgctcaaa acctagctcc ctacacatac cgctgaagga acgcacccta
      361 acataaatgg ttgcccactc cttggccagg acatagatat acagcacagg tcttgcttgc
      421 ccctctctac tgcacccaca catatacaat ccagtgcctc ataacacgcc ttgatagcac
      481 acaccctagc agagaggaac ctacagcagc gcctcacaaa cagaatccac tgcttcaagc
      541 atcttaacac tggttgtcac acacacctta caccaacagt gtcacattac actccgcagc
      601 gcgcgcacac acacacatac acacgcgcac acacacacca cactccactc tccctggcca
      661 gattccctcg ggagaagcct ccaggttctc ctagagagca tccagagcct tgtcacctca
      721 atcgggactt tgttattgta attctcggca caaccggaga ccccgggccg gccagaccgg
      781 cttctcggcg acacctcccc ccacttccac tccgggccct gaccggctgg gtattccggg
      841 aacaagctgg acctgacagg ccgcgccatg ccgccaccct ggagctgtgt ggccctagat
      901 ccctttgcac aatactagag aaggtgtttg agaccttttt cggaccattt agctgcttcc
      961 tccgagccac ctgggtccct agcacaccta agtcccgcac acctgggtgc ccctctaccg
     1021 gggccgggtt gtaggccagt ctggtgtgcc cacaaagcct cggggctaga atggagacct
     1081 cagcatgcgc agaagaaaaa ctggtaggcg aactggactc tcgttccttc cttcggccac
     1141 tctctggtag ttgaggcttc tggcctcagt ttccccaaca gtgagggtaa ctattgctct
     1201 agcagggaaa acgagtgacg ctgaggccat cgaggactga gtgcagagca agtaccctgt
     1261 ctctgtcgcc ttgagaggat cggttttatg agaatgtccc cgcccggcca ggctcgcggc
     1321 tttgtgattc cggcgccggc ttcctccctg cccccctccc ggcgcccgct gcgctgctcc
     1381 cgccggcgcc ggcttctcgg ggacctaggc ggaggccgga gatgcgggag aggagggatt
     1441 ccccgcggcg gtcctgaagg cgagggacgc aagtggcctc ctggcctaag agagttctta
     1501 ctatactgcg cctcacctag tctcaccttg ggctccagga ggccaggcgt caccctggtg
     1561 ggggcgggga cagcgaccaa aaccttagga gcggtcgtcg cctcccacta cacacaaaca
     1621 cacaggcgca cacactaggc ctcctgtggg aggaggcgct cgggcatgct tgggtgtgtg
     1681 cggagagcgc tcactgaccg agaagttctc ctgattctgg agcctgccag gatggggcct
     1741 ctgaggccca gcccagggcc tggggggcag cggttgctgc tgcccccctt actgctggca
     1801 ctgctgctcc tattggctcc atctgccagc cataccaccc aggtagtata caaggtgcca
     1861 gaggaacagc cgcccaacac ccttattggg agccttgctg ccgactacgg tttaccagac
     1921 gtgggtcatc tgtataaact agaggtaggt gctccgtatc ttcgagtgga tggcaagact
     1981 ggagacattt tcaccacaga gacctccatt gatcgagagg ggctccgtga atgccagaac
     2041 cagatccctg ggaatccctg tatcctggag tttgaggtgt caatcacgga cctcgtgcag
     2101 aacggcagcc cccggctgct agagggccag atagaggtgc aagacatcaa tgacaacacg
     2161 ccgaactttg cctcgccagt cattaccctg gccatccctg agaacaccaa catcggctcg
     2221 ctcttcccca tcccactggc cacagaccgt gacgccggcc ccaatggcgt agcatcctat
     2281 gagctgcagg ctgggcctga ggcccaggag ctatttggac tacaggtagc cgaggaccag
     2341 gaggagaagc agccacagct cattgtcatg ggcaacctgg accgtgaacg ctgggactcc
     2401 tacgacctca ccatcaaggt acaggatgga ggcaatcctc cacgtgccag cagcgccctg
     2461 cttcgtgtca ctgtgcttga tacaaacgac aacgccccca aattcgagcg gcctacctac
     2521 gaagccgagc tgtctgagaa cagtcccatt ggccactcgg tcatccaggt gaaagctaac
     2581 gactcagacc aaggtgccaa tgcggagatt gactacacgt tccaccaggc acctgaggtt
     2641 gtcaggcgcc ttttgcgact agaccgaaac actggactta tcaccgtcca gggccccgtg
     2701 gaccgagagg atttaagcac tctgcgtttc tcagtgctcg ccaaggaccg aggcgccacc
     2761 cccaagagtg cccgtgccca ggtagttgtg actgtgaaag acatgaacga caatgccccg
     2821 accatcgaga tccgaggcat agggctggtg actcatcaag acggaatggc taacatatca
     2881 gaggacgtgg ctgaggagac cgccgtggcc ttggtgcagg tgtctgatcg agacgaggga
     2941 gagaacgcag ccgtcacctg tgtcgtagca ggcgatgtgc ccttccagct acgccaggcc
     3001 agcgagacag gcagcgacag caagaaaaag tatttcctgc agaccaccac ccctctcgac
     3061 tatgagaaag tcaaagacta taccatcgag atcgtggctg tggattccgg caaccctcca
     3121 ctctctagca ccaactccct caaggtgcag gtggtagacg tcaatgacaa cgcccccgtc
     3181 ttcacccaga gcatcactga agttgccttc ccagaaaaca acaagcctgg tgaagtggtg
     3241 gccgaggtca cggccagtga tgctgactct ggctctaacg cagagctagt atactcgctg
     3301 gaacctgagc cagctgccca agggctcttc actatctcac ccgagaatgg agagatccgg
     3361 gtgaagacat cactggatcg ggaacagaga gacagctatg agctgaaggt ggttgcggcc
     3421 gacaggggca gtcccagcct tcagggcaca gccacagtcc tcgtcaatgt gctcgactgt
     3481 aatgacaatg accccaaatt tatgctgagt ggctacaact tctcagtgat ggagaatatg
     3541 ccagcgctga gtccagtggg tatggtgact gtcattgacg gagacaaagg ggagaatgcc
     3601 cgggtgcagc tctcggtaga gcaggacaat ggtgactttg ttatccagaa tggcacaggc
     3661 accatcttat ccagtttgag cttcgatcgg gagcaacaga gtacctacac cttccaactg
     3721 aaggccgtag atggcggagt cccacctcgt tcggcttatg ttggtgtcac catcaatgtg
     3781 ctggatgaga atgacaatgc accctttatc accgccccct ccaacacatc tcaccgactg
     3841 ctgaccccgc agacacgtct tggtgagaca gtcagccagg tgacagcgga ggacattgac
     3901 tctggtatca atgctgagct gacctatagc atcgctggcg gcaaccctta tgggctcttc
     3961 cagattggat cacattcggg agccatcacg ctggaaaaag aaattgaacg gcgccaccac
     4021 gggttacacc gcctcgtggt gaaggtcagt gaccgtggca agccccctcg ctacggcaca
     4081 gccttagtcc acctttacgt caacgagacc ttagccaacc gcacgctgct agagaccctc
     4141 ctcgtccata gcctggacac gcccctggat attgacatcg ctggggatcc ggaatacgag
     4201 cgttccaagc agcgtggcaa cattctcttt ggggttgtag ccggtgtggt ggccgtcgcc
     4261 ttactcatag ccctggcagt actagtgcgc tactgccggc agcgggaggc caagagcggc
     4321 taccaggctg gtaagaagga gactaaggac ctgtatgccc ccaagcctag cggcaaagct
     4381 gctaagggaa gcaagagcaa agggaagaaa agcaagtcac cgaaacctgt gaagccagtg
     4441 gaggatgaag atgacaccgg gctgcagaag tccctcaagt tcaacctaat gagcgatgcc
     4501 cctggagaca gtccccgaat ccacctgccc ctcaactacc caccaggcag ccccgacttg
     4561 ggccgccatt accgctccaa ctccccactg ccttctatcc agctgcaacc ccagtcaccc
     4621 tcggcctcca agaagcacca ggtggtgcag gacctgccgc ctgcaaacac atttgtgggc
     4681 actggggaca ccacgtccac gggctccgag cagtactccg actacagcta tcgcaccaac
     4741 ccccccaaat accccagcaa gcaggtaggc cagccctttc ggcttagcac gccccagccc
     4801 ccaccccacc cctaccacgg ggccatctgg accgaggtgt gggaatgata gagcaggtgt
     4861 gtcttacccg ccatgatcga ctagatcatg agggagcctc ctgaggtaac tgtgggaggt
     4921 gggaacactg agctcagggt actgaggcct caactaagaa ccctgctgcc ttgcccaata
     4981 tggaggctta ggctgagtag aaactgatag ggaggcttcc tcatgtctcc cctccccatg
     5041 agggagaagc atgtgcctta tcagatctca ggatgctgaa ctagctactg ggtctttcag
     5101 gtggagctaa tggacaggta aataggtttg gagacagaag ggcacaggcg gatgtgggag
     5161 aagactactc caaacctggg tctctattgg agaccagcta tataggtgct tctttggaga
     5221 ggacacggaa gacctagaat ctgggtgggg actctactgg ggaggggggc acctccccac
     5281 ttgtgccttc tatatgtact gtgtattaac ttcttcctca tccccaggcc ctgggggctg
     5341 gccccacatc ccctacccca gccctattca tgtggcctta taataaagtt ctctattttt
     5401 gga
//
