LOCUS       XM_030249617            2765 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus non-homologous end joining factor (Paxx),
            transcript variant X8, mRNA.
ACCESSION   XM_030249617
VERSION     XM_030249617.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2765
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..2765
                     /gene="Paxx"
                     /gene_synonym="D930050G13Rik"
                     /note="non-homologous end joining factor; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 2 ESTs, 71 long SRA reads, and 96% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 46 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:227622"
                     /db_xref="MGI:MGI:2442831"
     CDS             1744..2385
                     /gene="Paxx"
                     /gene_synonym="D930050G13Rik"
                     /codon_start=1
                     /product="protein PAXX isoform X8"
                     /protein_id="XP_030105477.1"
                     /db_xref="GeneID:227622"
                     /db_xref="MGI:MGI:2442831"
                     /translation="MAPPLLSLPLCILPPGSGSPRLVCYCERDSGGDGDRDDFNLYVT
                     DAAELWSTCFSPDSLARLKARFGLSGAEDIHSRFRAACQQQAVTVSLQEDRALITLSG
                     DTPALAFDLSKVPSPEAAPRLQALTLSLAEHVCNLERRLAAAEETITSPKKNTQPAGT
                     QFLPDDKSSLWGSPEAFPNCQWSPDTPNLYIFAKLTLQIHKEGMKWTYNMSMA"
ORIGIN      
        1 gaggctgaga aacaaatcct tgcagacttt agcagcctag aacaagaagc agcgatatct
       61 ccaggtcctt aaggtctggg acaggcccct cgagtggaag aggatgccgt tcaccatctc
      121 ccagacctga ggcctggaca ggactctgct tcctggctct ggctctggct ctggctctgg
      181 ctctggctct ggctctggct ctgcctctgg ctctgcctct ggctctgcct ctgcctctgg
      241 ctctggctct ggggctctgg ctctgactct ggctctggct ctggctctgg ctctggctct
      301 ggctctggct ctggctctgg ctctggctct ggctctggct ctggcacagg caggcctcca
      361 tactttaata tcaaaggttt tcctgggttg ccttgtgctg tggtgagcaa tgcagtaggg
      421 atgggagaaa tgacagacat catttctgcc atattccagt ggctagaata gaagcaagac
      481 cttagatgca gcttctagga gggggtcaga caatggtgga gatgcaggca gacatcaagg
      541 ctgagccaga aactcctaaa accaggatgt acggtacaca gtgaaaagca gggaaagtaa
      601 gacatgggag agagggatgg agacttgagc agaggtgaaa tgttctacat ggatcctcaa
      661 gaggacactt tcaaaagaac tacaggtaag tacacccggc tggagacagg caaaaaccca
      721 tgcacgcaaa ggctctagtc cggagcctca gcagggttga gcaaaactag aggaaagtgg
      781 gaattgagta tgtttggctg atggcacttt tcaaatgtta gcacagttca ccaagttact
      841 aaccactctc accatggttc tcataggttc atgctagccc tcttccacag ccttgggaag
      901 acttctgttc ccatcaggcc tcctcctgag cacacccttt gctgggctcc attctctgca
      961 ggtggcatca gcccctacta tgcaggccct gtgtggattc tcatgagcat ttgctgcagt
     1021 gtgagtgctg tcctgtcgga ctagtcatct ctcccattag atctcaggtt ccagagacct
     1081 cctgttggtg aaggtgtcct cagggctgac aggtatcaca cagagggtgg tgactcagac
     1141 aatgggaggg tattgcccgg gagaaaactg catctccaaa cgtttccaca tgtactgtac
     1201 ttactcttgt attttggttt gttacaactc agctttagaa agagatgtgt ttatatctaa
     1261 agtgacagga agggacaagt gaccaacagt ttggaggccc tgcagtacaa gcccttgggg
     1321 gatagatagg aaagaagacc ggcattgaag agcggcagat atgttgctaa gaaggaccca
     1381 gaaaagcgga agagcacaag gagtgagacc atagtagatc tctgtttgga tgcaagggcc
     1441 aaagaacaga gcccagaata gcactgagta gctaatgcgc taagccccgc cctccgagtg
     1501 cttcccgccc cgccccacgt gctaaacccc gccctttagt cagcctctta cttaatgcct
     1561 ggtacccgga aacaatgtca accttgagta ccgcccatcg cctcgtcctt ccgtccctcc
     1621 agaaaccaga agttccgccg ccgagcgaac accttagatt gtgagtcacc gagtttgtac
     1681 ttctgcgcag gcgccctcag cccacatcta acttggctcc tgcggcgaga ccgccctgct
     1741 gtcatggctc ctccgttgtt gtcgctgccg ctttgtattc tgccgccggg ttcgggctcc
     1801 ccccgcctgg tgtgctactg cgagcgggat agtggtggag acggggaccg cgacgacttc
     1861 aacctctatg tgacggacgc cgccgagctc tggagcacct gcttctcgcc tgacagcctg
     1921 gcgaggctca aagcccgatt tggcctaagt ggggctgaag atatccattc ccggttcagg
     1981 gcagcctgcc aacagcaggc agtaactgta agcctgcaag aagacagagc attgataacc
     2041 ctttcagggg atacccctgc cctggccttt gacctctcca aggtgcccag cccggaggca
     2101 gcccccaggc tgcaggcttt gactctcagc ctggcagagc atgtatgcaa cctagagagg
     2161 cggctggcag ctgcagaaga gaccatcact agccccaaga agaacaccca gccagcaggc
     2221 actcagttct taccagatga caaatcatca ctgtggggca gccctgaagc ctttcccaac
     2281 tgccagtggt caccagacac accgaattta tatatttttg caaagctgac cttacaaatc
     2341 cacaaggaag ggatgaagtg gacatacaac atgagcatgg cttagcaaga aagaaacaag
     2401 tcagagtgac gccagctggc tcttccttgc ttcaggggag ctgtggacat gtcctgtgtc
     2461 agtctgtgcg tagtaggagc catcggtgcc ccactcccat gcttgcagct tcctggactc
     2521 agctacagtt tgcctcccaa aatccagggt caacactgca ccactgaact gtgtccccca
     2581 gggtaccatc acagagaatg gacaaaaaat gagcccacat atgcatgcca acagagtctg
     2641 atattatagg cttgttgttt tggaatctta accccctgga tctgtgattt ttgtcggggg
     2701 agatagtgtc cataaagagg caatcaaata aaaaatgaga ccacccagta ggctctaatt
     2761 caaaa
//
